Wall clock time and date at job start Tue Mar 31 2020 22:49:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.35452 * 128.00463 * 2 1
4 4 O 1.34041 * 106.44706 * 179.97438 * 3 2 1
5 5 N 1.20921 * 111.56502 * 359.70527 * 4 3 2
6 6 C 1.30174 * 111.60352 * 0.49005 * 5 4 3
7 7 C 1.50702 * 126.80008 * 179.79786 * 6 5 4
8 8 N 1.46904 * 109.47014 * 269.68114 * 7 6 5
9 9 C 1.46899 * 111.00241 * 180.02562 * 8 7 6
10 10 H 1.08997 * 110.88409 * 37.42496 * 9 8 7
11 11 C 1.55156 * 111.00839 * 161.35341 * 9 8 7
12 12 C 1.54327 * 103.02221 * 153.38068 * 11 9 8
13 13 H 1.09005 * 109.99076 * 218.66730 * 12 11 9
14 14 C 1.52994 * 109.78079 * 97.49705 * 12 11 9
15 15 N 1.47022 * 107.26447 * 338.13784 * 12 11 9
16 16 C 1.34780 * 125.64445 * 178.85381 * 15 12 11
17 17 O 1.21280 * 120.00423 * 359.71250 * 16 15 12
18 18 C 1.50701 * 119.99795 * 179.71926 * 16 15 12
19 19 S 1.81002 * 109.47156 * 179.97438 * 18 16 15
20 20 C 1.76193 * 100.00049 * 180.02562 * 19 18 16
21 21 H 1.08005 * 120.00026 * 359.97438 * 20 19 18
22 22 C 1.38806 * 120.00056 * 180.02562 * 20 19 18
23 23 N 1.31631 * 120.00121 * 179.97438 * 22 20 19
24 24 Si 1.86799 * 119.99856 * 0.02562 * 22 20 19
25 25 H 1.48489 * 109.47437 * 89.99924 * 24 22 20
26 26 H 1.48500 * 109.46931 * 210.00082 * 24 22 20
27 27 H 1.48503 * 109.46655 * 329.99597 * 24 22 20
28 28 C 1.47417 * 108.70718 * 358.58681 * 15 12 11
29 29 H 1.09009 * 109.46854 * 270.03745 * 1 2 3
30 30 H 1.08990 * 109.47464 * 30.04045 * 1 2 3
31 31 H 1.09001 * 109.46942 * 150.04510 * 1 2 3
32 32 H 1.08000 * 126.77995 * 359.97438 * 3 2 1
33 33 H 1.08998 * 109.47127 * 149.68711 * 7 6 5
34 34 H 1.08999 * 109.47697 * 29.68035 * 7 6 5
35 35 H 1.00903 * 111.00245 * 303.95855 * 8 7 6
36 36 H 1.09000 * 110.71517 * 271.94460 * 11 9 8
37 37 H 1.09003 * 110.71734 * 35.02772 * 11 9 8
38 38 H 1.08995 * 109.47193 * 300.80255 * 14 12 11
39 39 H 1.09004 * 109.46931 * 60.80688 * 14 12 11
40 40 H 1.09006 * 109.47131 * 180.80442 * 14 12 11
41 41 H 1.09002 * 109.47060 * 299.99722 * 18 16 15
42 42 H 1.09001 * 109.47380 * 59.99809 * 18 16 15
43 43 H 0.96999 * 120.00138 * 179.97438 * 23 22 20
44 44 H 1.09003 * 110.36926 * 143.19213 * 28 15 12
45 45 H 1.08999 * 110.36739 * 265.51711 * 28 15 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3410 1.0673 0.0000
4 8 3.5876 0.5748 0.0006
5 7 3.5878 -0.6344 0.0067
6 6 2.3776 -1.1139 0.0006
7 6 1.9828 -2.5683 0.0010
8 7 1.8550 -3.0413 -1.3840
9 6 1.4697 -4.4583 -1.4229
10 1 0.7645 -4.6913 -0.6251
11 6 0.8872 -4.8384 -2.8099
12 6 1.1904 -6.3481 -2.9124
13 1 1.4828 -6.6011 -3.9316
14 6 -0.0461 -7.1532 -2.5077
15 7 2.2979 -6.6345 -1.9888
16 6 2.8441 -7.8470 -1.7694
17 8 2.4180 -8.8192 -2.3560
18 6 3.9841 -7.9946 -0.7949
19 16 4.4933 -9.7300 -0.7204
20 6 5.7985 -9.6156 0.4575
21 1 6.0539 -8.6592 0.8895
22 6 6.4993 -10.7545 0.8297
23 7 7.4748 -10.6690 1.7093
24 14 6.0591 -12.4083 0.0810
25 1 6.8577 -12.6216 -1.1526
26 1 6.3566 -13.4880 1.0562
27 1 4.6129 -12.4300 -0.2555
28 6 2.7163 -5.3749 -1.3474
29 1 -0.3633 0.0007 1.0278
30 1 -0.3634 0.8895 -0.5144
31 1 -0.3633 -0.8904 -0.5131
32 1 2.0576 2.1094 -0.0004
33 1 1.0285 -2.6856 0.5144
34 1 2.7463 -3.1520 0.5152
35 1 1.1995 -2.4743 -1.9007
36 1 -0.1868 -4.6554 -2.8403
37 1 1.3931 -4.2895 -3.6042
38 1 -0.3270 -6.8985 -1.4858
39 1 -0.8701 -6.9164 -3.1809
40 1 0.1780 -8.2183 -2.5682
41 1 4.8244 -7.3829 -1.1234
42 1 3.6616 -7.6682 0.1938
43 1 7.9643 -11.4649 1.9697
44 1 2.9943 -5.5523 -0.3084
45 1 3.5483 -4.9295 -1.8928
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001278344750.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:49:54
Heat of formation + Delta-G solvation = 3.922610 kcal
Electronic energy + Delta-G solvation = -26553.719866 eV
Core-core repulsion = 22699.733049 eV
Total energy + Delta-G solvation = -3853.986817 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-45.88467 -41.35571 -39.09615 -37.13681 -35.11708 -34.70756 -33.46391 -33.13087
-30.81329 -30.31313 -28.93392 -27.89426 -26.94274 -26.81764 -23.50545 -22.53046
-22.14282 -21.71703 -20.47344 -19.63000 -18.56671 -18.42778 -18.09489 -17.37571
-17.15270 -16.71689 -16.55677 -16.10440 -15.86539 -15.32398 -15.09153 -14.93216
-14.86614 -14.42655 -14.30737 -14.17145 -14.01998 -13.85383 -13.74174 -13.38050
-13.31427 -13.16947 -13.09452 -13.01280 -12.91614 -12.63432 -12.12718 -12.10077
-11.89190 -11.87811 -11.68562 -11.20158 -10.99002 -10.94631 -10.59289 -10.22043
-9.80398 -9.56530 -9.04683 -8.54552 -6.26449 0.64616 0.92138 1.21486
1.29392 1.42403 1.48083 1.50859 1.98942 2.22561 2.48901 2.62828
2.83315 2.99104 3.23622 3.40782 3.49326 3.63634 3.78949 3.99590
4.04905 4.11065 4.17766 4.19832 4.32300 4.36246 4.37241 4.38395
4.57347 4.65784 4.70778 4.80911 4.82016 4.85043 4.89152 4.94279
4.97913 5.02642 5.07467 5.28185 5.38874 5.46671 5.67455 5.83622
6.07693 6.28630 6.36088 6.89862 7.03810 7.40644 8.58169
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.013461 B = 0.002436 C = 0.002113
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2079.540912 B =11491.231799 C =13248.444646
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C -0.205 4.205
3 C -0.058 4.058
4 O 0.086 5.914
5 N -0.391 5.391
6 C 0.006 3.994
7 C 0.138 3.862
8 N -0.674 5.674
9 C 0.089 3.911
10 H 0.078 0.922
11 C -0.109 4.109
12 C 0.130 3.870
13 H 0.068 0.932
14 C -0.158 4.158
15 N -0.610 5.610
16 C 0.550 3.450
17 O -0.555 6.555
18 C -0.105 4.105
19 S -0.168 6.168
20 C -0.531 4.531
21 H 0.059 0.941
22 C 0.045 3.955
23 N -0.917 5.917
24 Si 0.916 3.084
25 H -0.262 1.262
26 H -0.256 1.256
27 H -0.236 1.236
28 C 0.101 3.899
29 H 0.079 0.921
30 H 0.091 0.909
31 H 0.075 0.925
32 H 0.256 0.744
33 H 0.079 0.921
34 H 0.073 0.927
35 H 0.361 0.639
36 H 0.116 0.884
37 H 0.093 0.907
38 H 0.060 0.940
39 H 0.092 0.908
40 H 0.036 0.964
41 H 0.102 0.898
42 H 0.106 0.894
43 H 0.278 0.722
44 H 0.071 0.929
45 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.799 27.697 -6.353 35.814
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.210 4.210
3 C -0.139 4.139
4 O 0.021 5.979
5 N -0.096 5.096
6 C -0.153 4.153
7 C 0.009 3.991
8 N -0.308 5.308
9 C -0.022 4.022
10 H 0.096 0.904
11 C -0.147 4.147
12 C 0.027 3.973
13 H 0.086 0.914
14 C -0.216 4.216
15 N -0.345 5.345
16 C 0.337 3.663
17 O -0.433 6.433
18 C -0.256 4.256
19 S 0.059 5.941
20 C -0.678 4.678
21 H 0.077 0.923
22 C -0.160 4.160
23 N -0.555 5.555
24 Si 0.738 3.262
25 H -0.186 1.186
26 H -0.180 1.180
27 H -0.160 1.160
28 C -0.023 4.023
29 H 0.097 0.903
30 H 0.110 0.890
31 H 0.094 0.906
32 H 0.272 0.728
33 H 0.097 0.903
34 H 0.092 0.908
35 H 0.182 0.818
36 H 0.134 0.866
37 H 0.112 0.888
38 H 0.079 0.921
39 H 0.111 0.889
40 H 0.055 0.945
41 H 0.120 0.880
42 H 0.124 0.876
43 H 0.087 0.913
44 H 0.090 0.910
45 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -20.362 25.444 -7.149 33.363
hybrid contribution -0.205 0.459 1.176 1.279
sum -20.567 25.903 -5.973 33.610
Atomic orbital electron populations
1.20192 0.85137 1.04390 1.03451 1.21724 1.00008 0.90788 1.08434
1.26625 0.81899 1.02907 1.02472 1.84811 1.30849 1.15112 1.67172
1.73921 1.24035 0.92102 1.19547 1.23639 0.88746 0.98903 1.03989
1.20199 1.01426 0.86807 0.90693 1.60109 1.55762 1.02222 1.12756
1.22493 0.93961 0.87112 0.98614 0.90389 1.22825 1.03628 0.91744
0.96527 1.21734 0.86274 0.96414 0.92870 0.91411 1.22114 0.97190
0.99894 1.02395 1.48422 1.35620 1.06402 1.44076 1.19533 0.82679
0.82048 0.82016 1.90668 1.63229 1.38527 1.50859 1.23224 0.99684
1.00436 1.02217 1.84605 1.43700 1.08672 1.57136 1.22437 1.19437
0.98228 1.27741 0.92323 1.25596 0.93555 1.02532 0.94336 1.70019
1.21680 1.31700 1.32058 0.85842 0.81623 0.79348 0.79401 1.18619
1.18034 1.16013 1.22492 0.98738 0.82938 0.98107 0.90273 0.89028
0.90609 0.72825 0.90277 0.90849 0.81802 0.86568 0.88821 0.92085
0.88885 0.94472 0.87964 0.87556 0.91265 0.91037 0.90718
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.26 10.37 71.24 0.74 0.48 16
2 C -0.21 -2.15 6.32 -19.74 -0.12 -2.28 16
3 C -0.06 -0.54 12.26 67.18 0.82 0.28 16
4 O 0.09 1.57 11.20 71.63 0.80 2.37 16
5 N -0.39 -8.94 12.07 -49.57 -0.60 -9.53 16
6 C 0.01 0.11 6.84 43.58 0.30 0.40 16
7 C 0.14 2.00 6.06 85.56 0.52 2.52 16
8 N -0.67 -8.77 6.36 -488.39 -3.11 -11.88 16
9 C 0.09 1.22 3.32 46.31 0.15 1.37 16
10 H 0.08 0.95 7.92 -2.39 -0.02 0.93 16
11 C -0.11 -1.27 5.95 31.78 0.19 -1.08 16
12 C 0.13 2.70 3.51 45.34 0.16 2.86 16
13 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16
14 C -0.16 -3.23 9.05 71.98 0.65 -2.58 16
15 N -0.61 -16.78 3.08 -788.05 -2.43 -19.21 16
16 C 0.55 20.77 7.65 87.66 0.67 21.44 16
17 O -0.55 -24.80 14.75 -3.03 -0.04 -24.85 16
18 C -0.10 -4.34 5.16 71.24 0.37 -3.98 16
19 S -0.17 -8.85 18.55 -56.49 -1.05 -9.90 16
20 C -0.53 -32.04 10.04 67.96 0.68 -31.36 16
21 H 0.06 3.76 8.03 -2.91 -0.02 3.73 16
22 C 0.05 2.73 5.50 84.86 0.47 3.19 16
23 N -0.92 -57.13 13.97 21.65 0.30 -56.83 16
24 Si 0.92 46.01 27.74 68.60 1.90 47.91 16
25 H -0.26 -12.81 7.11 99.48 0.71 -12.10 16
26 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16
27 H -0.24 -11.83 6.74 99.48 0.67 -11.16 16
28 C 0.10 2.21 6.34 86.86 0.55 2.76 16
29 H 0.08 0.22 8.14 -2.38 -0.02 0.20 16
30 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16
31 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16
32 H 0.26 -0.22 8.06 -2.91 -0.02 -0.24 16
33 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16
34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16
35 H 0.36 3.17 8.52 -89.69 -0.76 2.41 16
36 H 0.12 0.68 7.83 -2.39 -0.02 0.66 16
37 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16
38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16
39 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16
40 H 0.04 1.07 6.74 -2.38 -0.02 1.05 16
41 H 0.10 4.09 8.14 -2.39 -0.02 4.07 16
42 H 0.11 4.13 7.85 -2.40 -0.02 4.12 16
43 H 0.28 15.95 8.31 -92.71 -0.77 15.17 16
44 H 0.07 1.64 7.48 -2.39 -0.02 1.62 16
45 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16
Total: -1.00 -81.83 387.29 2.13 -79.70
By element:
Atomic # 1 Polarization: 7.97 SS G_CDS: 0.20 Total: 8.17 kcal
Atomic # 6 Polarization: -12.11 SS G_CDS: 6.15 Total: -5.96 kcal
Atomic # 7 Polarization: -91.62 SS G_CDS: -5.83 Total: -97.45 kcal
Atomic # 8 Polarization: -23.23 SS G_CDS: 0.76 Total: -22.48 kcal
Atomic # 14 Polarization: 46.01 SS G_CDS: 1.90 Total: 47.91 kcal
Atomic # 16 Polarization: -8.85 SS G_CDS: -1.05 Total: -9.90 kcal
Total: -81.83 2.13 -79.70 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001278344750.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.627 kcal
(2) G-P(sol) polarization free energy of solvation -81.830 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.796 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.704 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.923 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds