Wall clock time and date at job start Tue Mar 31 2020 22:46:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 N 1.34472 * 126.16688 * 2 1
4 4 C 1.30260 * 108.70166 * 180.26990 * 3 2 1
5 5 O 1.33969 * 108.75860 * 359.75548 * 4 3 2
6 6 C 1.34328 * 126.16329 * 179.85055 * 2 1 3
7 7 C 1.50703 * 126.44544 * 0.02562 * 6 2 1
8 8 N 1.46899 * 109.47107 * 89.71067 * 7 6 2
9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6
10 10 C 1.53775 * 113.61407 * 252.49998 * 9 8 7
11 11 C 1.53787 * 87.08043 * 220.01958 * 10 9 8
12 12 N 1.46499 * 113.61559 * 139.98077 * 11 10 9
13 13 C 1.46498 * 119.99933 * 322.50702 * 12 11 10
14 14 C 1.34776 * 119.99560 * 142.50199 * 12 11 10
15 15 O 1.21273 * 120.00685 * 0.02562 * 14 12 11
16 16 C 1.50704 * 119.99494 * 179.97438 * 14 12 11
17 17 S 1.81001 * 109.46821 * 180.02562 * 16 14 12
18 18 C 1.76209 * 99.99848 * 180.02562 * 17 16 14
19 19 H 1.07994 * 119.99517 * 0.02562 * 18 17 16
20 20 C 1.38798 * 120.00011 * 179.97438 * 18 17 16
21 21 N 1.31634 * 120.00030 * 0.02562 * 20 18 17
22 22 Si 1.86795 * 120.00157 * 180.02562 * 20 18 17
23 23 H 1.48504 * 109.47013 * 60.00119 * 22 20 18
24 24 H 1.48500 * 109.47298 * 180.02562 * 22 20 18
25 25 H 1.48502 * 109.47008 * 300.00261 * 22 20 18
26 26 C 1.53777 * 113.61048 * 155.00024 * 9 8 7
27 27 H 1.09001 * 109.47088 * 270.14614 * 1 2 3
28 28 H 1.09003 * 109.47057 * 30.14895 * 1 2 3
29 29 H 1.08998 * 109.47185 * 150.14720 * 1 2 3
30 30 H 1.07999 * 125.62027 * 179.73111 * 4 3 2
31 31 H 1.09002 * 109.47152 * 329.71154 * 7 6 2
32 32 H 1.09001 * 109.46980 * 209.71254 * 7 6 2
33 33 H 1.00902 * 111.00582 * 303.95889 * 8 7 6
34 34 H 1.08998 * 112.84721 * 23.80766 * 9 8 7
35 35 H 1.08997 * 113.61411 * 334.56479 * 10 9 8
36 36 H 1.08999 * 113.61566 * 105.47338 * 10 9 8
37 37 H 1.08999 * 113.61402 * 270.88970 * 11 10 9
38 38 H 1.08991 * 109.47360 * 90.00009 * 13 12 11
39 39 H 1.09003 * 109.46758 * 209.99935 * 13 12 11
40 40 H 1.09006 * 109.47051 * 329.99345 * 13 12 11
41 41 H 1.09001 * 109.47249 * 300.00281 * 16 14 12
42 42 H 1.08999 * 109.47167 * 60.00395 * 16 14 12
43 43 H 0.96997 * 120.00186 * 179.97438 * 21 20 18
44 44 H 1.09000 * 113.61321 * 254.53013 * 26 9 8
45 45 H 1.09005 * 113.61687 * 25.43676 * 26 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.3006 1.0856 0.0000
4 6 3.5431 0.6947 -0.0058
5 8 3.5734 -0.6447 -0.0042
6 6 2.2997 -1.0845 0.0028
7 6 1.8492 -2.5226 0.0060
8 7 1.6967 -2.9910 -1.3779
9 6 1.2582 -4.3926 -1.4140
10 6 2.3582 -5.3710 -1.8582
11 6 1.2709 -6.1069 -2.6590
12 7 1.7220 -6.5692 -3.9739
13 6 2.6364 -5.7435 -4.7665
14 6 1.2958 -7.7541 -4.4542
15 8 0.5386 -8.4375 -3.7982
16 6 1.7595 -8.2294 -5.8071
17 16 1.0183 -9.8411 -6.1668
18 6 1.7111 -10.1481 -7.7577
19 1 2.3774 -9.4255 -8.2050
20 6 1.4013 -11.3192 -8.4353
21 7 0.5895 -12.2002 -7.8897
22 14 2.1362 -11.6450 -10.1214
23 1 3.6175 -11.6710 -10.0191
24 1 1.6515 -12.9541 -10.6281
25 1 1.7234 -10.5688 -11.0576
26 6 0.5103 -4.7710 -2.7032
27 1 -0.3633 0.0026 1.0277
28 1 -0.3633 0.8887 -0.5162
29 1 -0.3633 -0.8913 -0.5115
30 1 4.4066 1.3433 -0.0114
31 1 0.8936 -2.6029 0.5242
32 1 2.5922 -3.1349 0.5171
33 1 1.0611 -2.3996 -1.8919
34 1 0.7418 -4.6981 -0.5040
35 1 3.1247 -4.9119 -2.4825
36 1 2.7736 -5.9612 -1.0414
37 1 0.7586 -6.8822 -2.0893
38 1 3.6660 -6.0058 -4.5235
39 1 2.4575 -5.9192 -5.8273
40 1 2.4659 -4.6913 -4.5387
41 1 1.4546 -7.5116 -6.5685
42 1 2.8457 -8.3204 -5.8076
43 1 0.3727 -13.0184 -8.3634
44 1 -0.5662 -4.8768 -2.5685
45 1 0.7717 -4.1479 -3.5586
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001279190743.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:46:56
Heat of formation + Delta-G solvation = 15.979116 kcal
Electronic energy + Delta-G solvation = -25920.236746 eV
Core-core repulsion = 22066.772738 eV
Total energy + Delta-G solvation = -3853.464008 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-43.74491 -40.32879 -38.40949 -35.91524 -35.43015 -33.99715 -32.42434 -31.65388
-29.29257 -28.37909 -26.97008 -26.06495 -25.57050 -25.40706 -23.18593 -22.60439
-21.20658 -19.95894 -19.03558 -17.70001 -17.56190 -17.21632 -16.89506 -16.34293
-15.91066 -15.71844 -15.39648 -14.92625 -14.80168 -14.69874 -14.15737 -13.95032
-13.75415 -13.56735 -13.31260 -13.05668 -12.83089 -12.72217 -12.60747 -12.43935
-12.27125 -12.19460 -11.85366 -11.47852 -11.42721 -11.10032 -11.03832 -11.03403
-10.87633 -10.80054 -10.72530 -9.80801 -9.34613 -9.22712 -9.05493 -8.94209
-8.46907 -8.22601 -6.49705 -6.21089 -3.91767 0.99096 2.21556 2.33742
2.93346 3.03425 3.23653 3.25847 3.29255 3.57780 3.70894 3.82228
4.13761 4.20903 4.30962 4.36443 4.42825 4.57259 4.66670 4.71776
4.88265 4.96022 5.08477 5.10632 5.13530 5.14777 5.23299 5.28490
5.43294 5.51161 5.53216 5.55600 5.60294 5.64185 5.72395 5.74583
5.83479 5.89774 5.91463 6.01809 6.14483 6.53790 6.68989 6.77947
7.28756 7.56122 7.59883 8.35420 8.56289 9.24007 10.86264
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.031066 B = 0.001688 C = 0.001649
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 901.091184 B =16586.432855 C =16974.783235
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 C -0.011 4.011
3 N -0.488 5.488
4 C 0.173 3.827
5 O -0.194 6.194
6 C -0.038 4.038
7 C 0.142 3.858
8 N -0.672 5.672
9 C 0.061 3.939
10 C -0.135 4.135
11 C 0.127 3.873
12 N -0.612 5.612
13 C 0.079 3.921
14 C 0.534 3.466
15 O -0.518 6.518
16 C -0.150 4.150
17 S -0.062 6.062
18 C -0.535 4.535
19 H 0.072 0.928
20 C 0.074 3.926
21 N -0.868 5.868
22 Si 0.918 3.082
23 H -0.274 1.274
24 H -0.283 1.283
25 H -0.274 1.274
26 C -0.155 4.155
27 H 0.075 0.925
28 H 0.078 0.922
29 H 0.071 0.929
30 H 0.250 0.750
31 H 0.068 0.932
32 H 0.094 0.906
33 H 0.346 0.654
34 H 0.081 0.919
35 H 0.096 0.904
36 H 0.070 0.930
37 H 0.120 0.880
38 H 0.055 0.945
39 H 0.075 0.925
40 H 0.070 0.930
41 H 0.089 0.911
42 H 0.089 0.911
43 H 0.269 0.731
44 H 0.074 0.926
45 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.066 25.523 16.709 30.776
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.131 4.131
3 N -0.217 5.217
4 C -0.054 4.054
5 O -0.080 6.080
6 C -0.092 4.092
7 C 0.013 3.987
8 N -0.304 5.304
9 C -0.049 4.049
10 C -0.174 4.174
11 C 0.022 3.978
12 N -0.346 5.346
13 C -0.064 4.064
14 C 0.322 3.678
15 O -0.392 6.392
16 C -0.301 4.301
17 S 0.164 5.836
18 C -0.684 4.684
19 H 0.090 0.910
20 C -0.136 4.136
21 N -0.503 5.503
22 Si 0.745 3.255
23 H -0.199 1.199
24 H -0.208 1.208
25 H -0.199 1.199
26 C -0.194 4.194
27 H 0.094 0.906
28 H 0.097 0.903
29 H 0.090 0.910
30 H 0.265 0.735
31 H 0.086 0.914
32 H 0.112 0.888
33 H 0.165 0.835
34 H 0.099 0.901
35 H 0.114 0.886
36 H 0.089 0.911
37 H 0.138 0.862
38 H 0.073 0.927
39 H 0.093 0.907
40 H 0.089 0.911
41 H 0.107 0.893
42 H 0.107 0.893
43 H 0.079 0.921
44 H 0.093 0.907
45 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 3.363 24.749 17.581 30.544
hybrid contribution 0.953 0.318 -1.630 1.915
sum 4.316 25.067 15.951 30.023
Atomic orbital electron populations
1.20133 0.86540 1.03391 1.02969 1.21560 0.97965 0.87698 1.05895
1.70362 1.01472 1.31729 1.18160 1.28042 0.97535 0.79414 1.00386
1.84460 1.30033 1.24440 1.69051 1.23030 0.80935 0.97368 1.07873
1.20322 1.00477 0.86401 0.91491 1.60580 1.54722 1.03091 1.12008
1.22861 0.96893 0.87325 0.97808 1.23539 0.97475 0.96433 0.99969
1.22280 0.95942 0.94928 0.84677 1.47765 1.48459 1.20157 1.18264
1.21735 0.93125 0.95335 0.96210 1.20371 0.79909 0.79826 0.87684
1.90679 1.34551 1.54475 1.59501 1.23565 1.04762 1.06010 0.95728
1.85382 1.62066 1.13211 1.22902 1.22821 1.33805 1.08205 1.03539
0.90996 1.24988 0.94972 0.94993 0.98603 1.70009 1.33016 1.09215
1.38047 0.86229 0.79332 0.77671 0.82299 1.19938 1.20810 1.19947
1.23727 1.00088 0.98089 0.97473 0.90636 0.90318 0.90997 0.73464
0.91439 0.88791 0.83460 0.90088 0.88559 0.91091 0.86239 0.92690
0.90675 0.91113 0.89261 0.89255 0.92142 0.90731 0.88904
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.41 10.05 36.01 0.36 -0.05 16
2 C -0.01 -0.09 7.11 -82.81 -0.59 -0.68 16
3 N -0.49 -4.55 11.29 -11.18 -0.13 -4.68 16
4 C 0.17 1.20 13.23 52.10 0.69 1.89 16
5 O -0.19 -1.67 10.78 5.36 0.06 -1.61 16
6 C -0.04 -0.31 6.90 -35.69 -0.25 -0.55 16
7 C 0.14 0.88 5.68 -4.98 -0.03 0.85 16
8 N -0.67 -4.55 6.55 -107.13 -0.70 -5.25 16
9 C 0.06 0.44 4.14 -66.90 -0.28 0.16 16
10 C -0.13 -1.20 7.31 -25.92 -0.19 -1.39 16
11 C 0.13 1.45 4.20 -67.11 -0.28 1.17 16
12 N -0.61 -8.47 3.08 -173.00 -0.53 -9.01 16
13 C 0.08 0.84 8.84 59.85 0.53 1.37 16
14 C 0.53 10.11 7.69 -10.98 -0.08 10.03 16
15 O -0.52 -11.73 15.35 5.56 0.09 -11.65 16
16 C -0.15 -3.06 4.71 36.01 0.17 -2.89 16
17 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16
18 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16
19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16
20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16
21 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16
22 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16
23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16
24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16
26 C -0.15 -1.34 7.19 -25.92 -0.19 -1.53 16
27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16
28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16
29 H 0.07 0.30 7.80 -51.93 -0.40 -0.11 16
30 H 0.25 0.50 8.06 -52.49 -0.42 0.08 16
31 H 0.07 0.31 7.80 -51.93 -0.40 -0.10 16
32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16
33 H 0.35 2.17 8.54 -39.29 -0.34 1.84 16
34 H 0.08 0.51 7.87 -51.93 -0.41 0.10 16
35 H 0.10 0.89 6.72 -51.93 -0.35 0.54 16
36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
37 H 0.12 1.59 7.24 -51.93 -0.38 1.21 16
38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16
39 H 0.07 0.81 6.44 -51.93 -0.33 0.47 16
40 H 0.07 0.60 6.34 -51.93 -0.33 0.28 16
41 H 0.09 1.68 7.40 -51.91 -0.38 1.30 16
42 H 0.09 1.70 8.11 -51.92 -0.42 1.28 16
43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16
44 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16
45 H 0.09 0.80 6.92 -51.93 -0.36 0.44 16
LS Contribution 387.95 15.07 5.85 5.85
Total: -1.00 -36.46 387.95 -8.42 -44.88
By element:
Atomic # 1 Polarization: 5.64 SS G_CDS: -6.61 Total: -0.97 kcal
Atomic # 6 Polarization: -4.65 SS G_CDS: 0.07 Total: -4.58 kcal
Atomic # 7 Polarization: -43.73 SS G_CDS: -0.63 Total: -44.36 kcal
Atomic # 8 Polarization: -13.40 SS G_CDS: 0.14 Total: -13.26 kcal
Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal
Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -36.46 -8.42 -44.88 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001279190743.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.857 kcal
(2) G-P(sol) polarization free energy of solvation -36.460 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.397 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.877 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.979 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds