Wall clock time and date at job start Tue Mar 31 2020 22:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29506 * 121.53313 * 2 1 4 4 S 1.69482 * 107.84597 * 179.97438 * 3 2 1 5 5 C 1.72016 * 96.02465 * 359.80278 * 4 3 2 6 6 C 1.50695 * 127.31809 * 180.24504 * 5 4 3 7 7 C 1.37893 * 105.36398 * 0.32739 * 5 4 3 8 8 C 1.47348 * 123.08747 * 179.88806 * 7 5 4 9 9 O 1.21613 * 119.99883 * 269.71440 * 8 7 5 10 10 N 1.34778 * 120.00111 * 89.70649 * 8 7 5 11 11 C 1.46497 * 119.99857 * 175.13106 * 10 8 7 12 12 C 1.52997 * 109.49691 * 302.44926 * 11 10 8 13 13 O 1.42899 * 109.47458 * 301.94884 * 12 11 10 14 14 C 1.53038 * 109.49868 * 62.51515 * 11 10 8 15 15 C 1.53042 * 109.53827 * 58.58399 * 14 11 10 16 16 C 1.53194 * 109.31290 * 61.36443 * 15 14 11 17 17 N 1.46923 * 108.77449 * 305.36537 * 16 15 14 18 18 C 1.36939 * 120.62951 * 233.58338 * 17 16 15 19 19 H 1.08003 * 119.99836 * 152.40545 * 18 17 16 20 20 C 1.38809 * 120.00140 * 332.39787 * 18 17 16 21 21 N 1.31618 * 119.99904 * 160.28064 * 20 18 17 22 22 Si 1.86797 * 119.99992 * 340.28714 * 20 18 17 23 23 H 1.48503 * 109.47403 * 95.06808 * 22 20 18 24 24 H 1.48504 * 109.47016 * 215.06716 * 22 20 18 25 25 H 1.48499 * 109.47167 * 335.06413 * 22 20 18 26 26 C 1.46931 * 118.73992 * 53.60912 * 17 16 15 27 27 H 1.09007 * 109.46367 * 270.02114 * 1 2 3 28 28 H 1.09000 * 109.47314 * 30.01565 * 1 2 3 29 29 H 1.08995 * 109.47364 * 150.02483 * 1 2 3 30 30 H 1.09003 * 109.47190 * 270.10824 * 6 5 4 31 31 H 1.09001 * 109.47613 * 30.10366 * 6 5 4 32 32 H 1.08998 * 109.47492 * 150.10607 * 6 5 4 33 33 H 0.97000 * 119.99688 * 354.85889 * 10 8 7 34 34 H 1.09004 * 109.47367 * 61.95534 * 12 11 10 35 35 H 1.09006 * 109.47103 * 181.95414 * 12 11 10 36 36 H 0.96693 * 113.99935 * 180.02562 * 13 12 11 37 37 H 1.08997 * 109.46071 * 178.60650 * 14 11 10 38 38 H 1.09002 * 109.45928 * 298.56872 * 14 11 10 39 39 H 1.09001 * 109.49632 * 181.31643 * 15 14 11 40 40 H 1.09000 * 109.49748 * 301.38110 * 15 14 11 41 41 H 1.09002 * 109.58661 * 65.15305 * 16 15 14 42 42 H 1.08999 * 109.58403 * 185.58060 * 16 15 14 43 43 H 0.96997 * 120.00155 * 180.02562 * 21 20 18 44 44 H 1.08992 * 109.58647 * 186.60243 * 26 17 16 45 45 H 1.08999 * 109.58597 * 66.17306 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1038 0.0000 4 16 3.8310 0.7028 0.0007 5 6 3.6017 -1.0020 0.0069 6 6 4.6676 -2.0672 0.0154 7 6 2.2352 -1.1868 0.0006 8 6 1.6035 -2.5180 0.0006 9 8 1.3433 -3.0676 -1.0525 10 7 1.3142 -3.1266 1.1679 11 6 0.5906 -4.4004 1.1701 12 6 -0.7478 -4.2286 0.4489 13 8 -1.5086 -3.2053 1.0938 14 6 1.4251 -5.4633 0.4519 15 6 2.7776 -5.6118 1.1526 16 6 2.5522 -6.0688 2.5973 17 7 1.6330 -5.1286 3.2528 18 6 1.9743 -4.5295 4.4359 19 1 1.5640 -3.5633 4.6901 20 6 2.8475 -5.1641 5.3087 21 7 3.4781 -4.4679 6.2306 22 14 3.1276 -7.0060 5.1746 23 1 4.3322 -7.2645 4.3455 24 1 3.3286 -7.5762 6.5310 25 1 1.9447 -7.6418 4.5408 26 6 0.3404 -4.8437 2.6150 27 1 -0.3632 0.0004 1.0278 28 1 -0.3634 0.8898 -0.5141 29 1 -0.3634 -0.8901 -0.5134 30 1 4.9299 -2.3269 -1.0102 31 1 5.5511 -1.6931 0.5326 32 1 4.2929 -2.9521 0.5298 33 1 1.5886 -2.7232 2.0062 34 1 -0.5679 -3.9483 -0.5890 35 1 -1.3009 -5.1674 0.4811 36 1 -2.3714 -3.0424 0.6889 37 1 0.8973 -6.4166 0.4755 38 1 1.5839 -5.1618 -0.5835 39 1 3.3805 -6.3521 0.6267 40 1 3.2956 -4.6528 1.1506 41 1 2.1166 -7.0680 2.6007 42 1 3.5034 -6.0807 3.1294 43 1 4.0885 -4.9112 6.8402 44 1 -0.1677 -4.0474 3.1587 45 1 -0.2755 -5.7430 2.6198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279528602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:26 Heat of formation + Delta-G solvation = -21.956375 kcal Electronic energy + Delta-G solvation = -29534.796689 eV Core-core repulsion = 25679.687674 eV Total energy + Delta-G solvation = -3855.109014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.57201 -38.98500 -37.27930 -36.25101 -33.99698 -33.33781 -32.39679 -30.93339 -30.43873 -29.51225 -28.00046 -25.84113 -25.25044 -23.36132 -22.14783 -21.60437 -21.01272 -19.27369 -18.79606 -18.17318 -17.12661 -16.82053 -16.66320 -15.68904 -15.37915 -15.05674 -14.73346 -14.46006 -14.04134 -13.89258 -13.78241 -13.50330 -13.42104 -13.35492 -13.17212 -12.82044 -12.58918 -12.34088 -12.29259 -12.22665 -12.17065 -11.84577 -11.57963 -11.45933 -11.16895 -10.85700 -10.74032 -10.63728 -10.29213 -10.04041 -9.93417 -9.76726 -9.52253 -9.44155 -9.27817 -8.67913 -8.64395 -8.63149 -7.06105 -6.01437 -3.39440 0.56394 1.34584 1.74108 2.18356 2.78552 3.27146 3.44413 3.46021 3.55389 4.33599 4.34832 4.46727 4.83596 4.88271 4.91452 5.17257 5.22841 5.25083 5.29618 5.37830 5.40118 5.45377 5.52400 5.54863 5.56781 5.67760 5.72430 5.78397 5.90170 5.99415 6.04246 6.11548 6.17054 6.25883 6.35849 6.51893 6.57832 6.59287 6.66879 6.81140 6.93991 7.74497 7.87529 7.90438 8.24525 8.46997 8.85300 9.64272 10.00633 11.13948 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012068 B = 0.004780 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.632295 B = 5855.836488 C = 6795.403425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.157 3.843 3 N -0.471 5.471 4 S 0.267 5.733 5 C -0.128 4.128 6 C -0.088 4.088 7 C -0.213 4.213 8 C 0.595 3.405 9 O -0.544 6.544 10 N -0.677 5.677 11 C 0.165 3.835 12 C 0.065 3.935 13 O -0.563 6.563 14 C -0.123 4.123 15 C -0.129 4.129 16 C 0.124 3.876 17 N -0.604 5.604 18 C -0.263 4.263 19 H 0.086 0.914 20 C 0.027 3.973 21 N -0.906 5.906 22 Si 0.884 3.116 23 H -0.290 1.290 24 H -0.304 1.304 25 H -0.270 1.270 26 C 0.151 3.849 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.411 0.589 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.371 0.629 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.026 0.974 42 H 0.071 0.929 43 H 0.263 0.737 44 H 0.078 0.922 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.686 4.402 -14.361 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.021 4.021 3 N -0.292 5.292 4 S 0.423 5.577 5 C -0.259 4.259 6 C -0.147 4.147 7 C -0.233 4.233 8 C 0.377 3.623 9 O -0.422 6.422 10 N -0.327 5.327 11 C 0.077 3.923 12 C -0.014 4.014 13 O -0.367 6.367 14 C -0.161 4.161 15 C -0.168 4.168 16 C -0.002 4.002 17 N -0.327 5.327 18 C -0.391 4.391 19 H 0.104 0.896 20 C -0.172 4.172 21 N -0.549 5.549 22 Si 0.714 3.286 23 H -0.218 1.218 24 H -0.233 1.233 25 H -0.195 1.195 26 C 0.024 3.976 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.248 0.752 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.217 0.783 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.372 6.122 -14.510 15.926 hybrid contribution -0.852 -2.578 0.118 2.717 sum -3.224 3.544 -14.392 15.169 Atomic orbital electron populations 1.20616 0.86033 1.03843 1.04232 1.21264 0.98956 0.86894 0.94975 1.76357 1.00133 1.26016 1.26692 1.83900 1.10658 0.95646 1.67481 1.26055 0.97332 1.02398 1.00092 1.20459 0.94974 0.95569 1.03668 1.20264 0.92469 0.96216 1.14390 1.17238 0.77564 0.83226 0.84236 1.90699 1.54415 1.65450 1.31679 1.45848 1.55942 1.22440 1.08467 1.20979 0.88962 0.83450 0.98869 1.22610 0.91563 0.90416 0.96806 1.86523 1.33056 1.58211 1.58893 1.21792 0.96565 0.97486 1.00285 1.21950 0.96147 1.01299 0.97452 1.21382 0.94725 0.92342 0.91730 1.44367 1.13292 1.51732 1.23312 1.18875 1.26173 1.00576 0.93469 0.89610 1.25261 0.98370 0.97566 0.96049 1.69818 1.28451 1.35142 1.21460 0.86944 0.77967 0.88034 0.75608 1.21803 1.23277 1.19453 1.21120 0.88267 0.98992 0.89211 0.89168 0.90266 0.89903 0.89440 0.89806 0.89330 0.75219 0.91726 0.93341 0.78294 0.91776 0.90393 0.92666 0.91929 0.95569 0.91080 0.92741 0.90390 0.94482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 9.96 36.01 0.36 -0.66 16 2 C 0.16 2.26 6.75 -83.20 -0.56 1.70 16 3 N -0.47 -6.93 11.97 32.50 0.39 -6.55 16 4 S 0.27 3.41 23.69 -107.50 -2.55 0.87 16 5 C -0.13 -1.75 6.67 -34.44 -0.23 -1.98 16 6 C -0.09 -1.04 10.19 36.00 0.37 -0.67 16 7 C -0.21 -3.20 5.61 -105.95 -0.59 -3.79 16 8 C 0.59 9.40 5.18 -12.55 -0.06 9.34 16 9 O -0.54 -9.48 13.37 5.27 0.07 -9.41 16 10 N -0.68 -10.87 4.01 -48.59 -0.19 -11.06 16 11 C 0.17 2.60 0.45 -131.70 -0.06 2.54 16 12 C 0.07 0.88 5.66 37.16 0.21 1.09 16 13 O -0.56 -7.07 13.01 -35.23 -0.46 -7.53 16 14 C -0.12 -1.92 4.51 -26.69 -0.12 -2.04 16 15 C -0.13 -2.20 5.93 -26.61 -0.16 -2.35 16 16 C 0.12 2.53 4.18 -3.71 -0.02 2.51 16 17 N -0.60 -13.11 2.64 -172.32 -0.45 -13.57 16 18 C -0.26 -6.82 10.04 -15.06 -0.15 -6.97 16 19 H 0.09 2.39 8.06 -52.48 -0.42 1.96 16 20 C 0.03 0.74 5.25 -17.43 -0.09 0.65 16 21 N -0.91 -26.67 13.97 55.49 0.78 -25.89 16 22 Si 0.88 21.59 24.34 -169.99 -4.14 17.45 16 23 H -0.29 -6.89 6.72 56.52 0.38 -6.51 16 24 H -0.30 -7.68 7.11 56.52 0.40 -7.27 16 25 H -0.27 -6.45 6.41 56.52 0.36 -6.08 16 26 C 0.15 2.77 5.03 -3.71 -0.02 2.75 16 27 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.08 1.00 7.39 -51.93 -0.38 0.62 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.18 6.59 -51.93 -0.34 0.84 16 33 H 0.41 7.24 8.41 -40.82 -0.34 6.90 16 34 H 0.06 0.92 6.22 -51.93 -0.32 0.60 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.37 2.96 9.12 45.56 0.42 3.37 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.25 6.23 -51.93 -0.32 0.92 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 1.10 6.27 -51.93 -0.33 0.77 16 41 H 0.03 0.54 6.95 -51.93 -0.36 0.18 16 42 H 0.07 1.61 4.52 -51.93 -0.23 1.37 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.08 1.50 7.70 -51.93 -0.40 1.10 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 363.57 15.07 5.48 5.48 Total: -1.00 -31.20 363.57 -7.83 -39.03 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -5.62 Total: 9.07 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -1.13 Total: 2.11 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.52 Total: -57.07 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.39 Total: -16.94 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.14 Total: 17.45 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -2.55 Total: 0.87 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.20 -7.83 -39.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279528602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.076 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds