Wall clock time and date at job start Tue Mar 31 2020 22:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29506 * 121.53313 * 2 1 4 4 S 1.69482 * 107.84597 * 179.97438 * 3 2 1 5 5 C 1.72016 * 96.02465 * 359.80278 * 4 3 2 6 6 C 1.50695 * 127.31809 * 180.24504 * 5 4 3 7 7 C 1.37893 * 105.36398 * 0.32739 * 5 4 3 8 8 C 1.47348 * 123.08747 * 179.88806 * 7 5 4 9 9 O 1.21613 * 119.99883 * 269.71440 * 8 7 5 10 10 N 1.34778 * 120.00111 * 89.70649 * 8 7 5 11 11 C 1.46497 * 119.99857 * 175.13106 * 10 8 7 12 12 C 1.52997 * 109.49691 * 302.44926 * 11 10 8 13 13 O 1.42899 * 109.47458 * 301.94884 * 12 11 10 14 14 C 1.53038 * 109.49868 * 62.51515 * 11 10 8 15 15 C 1.53042 * 109.53827 * 58.58399 * 14 11 10 16 16 C 1.53194 * 109.31290 * 61.36443 * 15 14 11 17 17 N 1.46923 * 108.77449 * 305.36537 * 16 15 14 18 18 C 1.36939 * 120.62951 * 233.58338 * 17 16 15 19 19 H 1.08003 * 119.99836 * 152.40545 * 18 17 16 20 20 C 1.38809 * 120.00140 * 332.39787 * 18 17 16 21 21 N 1.31618 * 119.99904 * 160.28064 * 20 18 17 22 22 Si 1.86797 * 119.99992 * 340.28714 * 20 18 17 23 23 H 1.48503 * 109.47403 * 95.06808 * 22 20 18 24 24 H 1.48504 * 109.47016 * 215.06716 * 22 20 18 25 25 H 1.48499 * 109.47167 * 335.06413 * 22 20 18 26 26 C 1.46931 * 118.73992 * 53.60912 * 17 16 15 27 27 H 1.09007 * 109.46367 * 270.02114 * 1 2 3 28 28 H 1.09000 * 109.47314 * 30.01565 * 1 2 3 29 29 H 1.08995 * 109.47364 * 150.02483 * 1 2 3 30 30 H 1.09003 * 109.47190 * 270.10824 * 6 5 4 31 31 H 1.09001 * 109.47613 * 30.10366 * 6 5 4 32 32 H 1.08998 * 109.47492 * 150.10607 * 6 5 4 33 33 H 0.97000 * 119.99688 * 354.85889 * 10 8 7 34 34 H 1.09004 * 109.47367 * 61.95534 * 12 11 10 35 35 H 1.09006 * 109.47103 * 181.95414 * 12 11 10 36 36 H 0.96693 * 113.99935 * 180.02562 * 13 12 11 37 37 H 1.08997 * 109.46071 * 178.60650 * 14 11 10 38 38 H 1.09002 * 109.45928 * 298.56872 * 14 11 10 39 39 H 1.09001 * 109.49632 * 181.31643 * 15 14 11 40 40 H 1.09000 * 109.49748 * 301.38110 * 15 14 11 41 41 H 1.09002 * 109.58661 * 65.15305 * 16 15 14 42 42 H 1.08999 * 109.58403 * 185.58060 * 16 15 14 43 43 H 0.96997 * 120.00155 * 180.02562 * 21 20 18 44 44 H 1.08992 * 109.58647 * 186.60243 * 26 17 16 45 45 H 1.08999 * 109.58597 * 66.17306 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1038 0.0000 4 16 3.8310 0.7028 0.0007 5 6 3.6017 -1.0020 0.0069 6 6 4.6676 -2.0672 0.0154 7 6 2.2352 -1.1868 0.0006 8 6 1.6035 -2.5180 0.0006 9 8 1.3433 -3.0676 -1.0525 10 7 1.3142 -3.1266 1.1679 11 6 0.5906 -4.4004 1.1701 12 6 -0.7478 -4.2286 0.4489 13 8 -1.5086 -3.2053 1.0938 14 6 1.4251 -5.4633 0.4519 15 6 2.7776 -5.6118 1.1526 16 6 2.5522 -6.0688 2.5973 17 7 1.6330 -5.1286 3.2528 18 6 1.9743 -4.5295 4.4359 19 1 1.5640 -3.5633 4.6901 20 6 2.8475 -5.1641 5.3087 21 7 3.4781 -4.4679 6.2306 22 14 3.1276 -7.0060 5.1746 23 1 4.3322 -7.2645 4.3455 24 1 3.3286 -7.5762 6.5310 25 1 1.9447 -7.6418 4.5408 26 6 0.3404 -4.8437 2.6150 27 1 -0.3632 0.0004 1.0278 28 1 -0.3634 0.8898 -0.5141 29 1 -0.3634 -0.8901 -0.5134 30 1 4.9299 -2.3269 -1.0102 31 1 5.5511 -1.6931 0.5326 32 1 4.2929 -2.9521 0.5298 33 1 1.5886 -2.7232 2.0062 34 1 -0.5679 -3.9483 -0.5890 35 1 -1.3009 -5.1674 0.4811 36 1 -2.3714 -3.0424 0.6889 37 1 0.8973 -6.4166 0.4755 38 1 1.5839 -5.1618 -0.5835 39 1 3.3805 -6.3521 0.6267 40 1 3.2956 -4.6528 1.1506 41 1 2.1166 -7.0680 2.6007 42 1 3.5034 -6.0807 3.1294 43 1 4.0885 -4.9112 6.8402 44 1 -0.1677 -4.0474 3.1587 45 1 -0.2755 -5.7430 2.6198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279528602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:25 Heat of formation + Delta-G solvation = -45.389549 kcal Electronic energy + Delta-G solvation = -29535.812827 eV Core-core repulsion = 25679.687674 eV Total energy + Delta-G solvation = -3856.125153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.80132 -40.17948 -38.61971 -37.39791 -35.48702 -34.41916 -33.98314 -32.68878 -31.73471 -30.55713 -29.04014 -27.40390 -26.75390 -24.51611 -23.75754 -22.85921 -22.34995 -20.55130 -20.02125 -19.24334 -18.72133 -18.14031 -17.85557 -17.19964 -16.96940 -16.23815 -15.88748 -15.63455 -15.53957 -15.25981 -15.10604 -14.98265 -14.60129 -14.43447 -14.33733 -14.21892 -13.86580 -13.71846 -13.57909 -13.32286 -13.28873 -13.20051 -13.12158 -12.91995 -12.48065 -12.28616 -12.10877 -11.95553 -11.78687 -11.61426 -11.41373 -11.32536 -11.05951 -10.73980 -10.50439 -10.38164 -9.90762 -9.68016 -8.90677 -8.12343 -5.45181 -0.51542 0.29095 0.68176 1.07867 1.32548 1.44832 1.52286 1.56795 2.32425 2.44606 3.09343 3.28145 3.32438 3.37704 3.71584 3.86554 3.97696 4.03791 4.13513 4.23015 4.25736 4.31188 4.42571 4.50973 4.52108 4.61155 4.62512 4.63977 4.69951 4.80124 4.80469 4.85199 4.95942 5.00568 5.04013 5.09109 5.13116 5.27437 5.42463 5.53022 5.64908 5.89452 6.15850 6.59532 6.92449 7.00592 7.20698 7.64385 8.04233 9.06843 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012068 B = 0.004780 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.632295 B = 5855.836488 C = 6795.403425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.150 3.850 3 N -0.496 5.496 4 S 0.302 5.698 5 C -0.132 4.132 6 C -0.088 4.088 7 C -0.239 4.239 8 C 0.605 3.395 9 O -0.559 6.559 10 N -0.678 5.678 11 C 0.165 3.835 12 C 0.074 3.926 13 O -0.577 6.577 14 C -0.117 4.117 15 C -0.122 4.122 16 C 0.120 3.880 17 N -0.612 5.612 18 C -0.239 4.239 19 H 0.055 0.945 20 C -0.031 4.031 21 N -0.956 5.956 22 Si 0.943 3.057 23 H -0.280 1.280 24 H -0.318 1.318 25 H -0.257 1.257 26 C 0.153 3.847 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.402 0.598 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.393 0.607 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.036 0.964 42 H 0.048 0.952 43 H 0.259 0.741 44 H 0.063 0.937 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.227 3.431 -16.462 17.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.027 4.027 3 N -0.317 5.317 4 S 0.458 5.542 5 C -0.263 4.263 6 C -0.147 4.147 7 C -0.259 4.259 8 C 0.388 3.612 9 O -0.439 6.439 10 N -0.326 5.326 11 C 0.078 3.922 12 C -0.005 4.005 13 O -0.384 6.384 14 C -0.155 4.155 15 C -0.161 4.161 16 C -0.005 4.005 17 N -0.336 5.336 18 C -0.368 4.368 19 H 0.073 0.927 20 C -0.226 4.226 21 N -0.602 5.602 22 Si 0.773 3.227 23 H -0.207 1.207 24 H -0.248 1.248 25 H -0.181 1.181 26 C 0.028 3.972 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.090 0.910 33 H 0.236 0.764 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.242 0.758 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.962 5.138 -16.674 17.698 hybrid contribution -0.704 -2.160 0.739 2.389 sum -3.666 2.978 -15.935 16.621 Atomic orbital electron populations 1.20635 0.84719 1.04393 1.04501 1.21526 1.00008 0.86588 0.94577 1.76275 1.01340 1.26519 1.27600 1.83726 1.09412 0.94501 1.66526 1.26415 0.97435 1.03540 0.98868 1.20550 0.94952 0.94397 1.04774 1.20345 0.93164 0.96076 1.16329 1.17204 0.76995 0.83276 0.83689 1.90681 1.55199 1.66019 1.32025 1.45865 1.56053 1.22605 1.08097 1.20991 0.90582 0.83438 0.97211 1.22448 0.90592 0.91603 0.95847 1.86479 1.34522 1.58065 1.59325 1.21759 0.95755 0.98194 0.99839 1.21855 0.97446 1.01362 0.95427 1.21422 0.93277 0.92438 0.93335 1.44407 1.15112 1.51776 1.22339 1.18775 1.24242 0.99278 0.94530 0.92687 1.25822 0.99158 1.01187 0.96385 1.69949 1.30348 1.36600 1.23288 0.85982 0.78594 0.83301 0.74847 1.20692 1.24797 1.18137 1.21182 0.86635 0.99079 0.90323 0.88934 0.88863 0.90119 0.87669 0.88043 0.91016 0.76387 0.92180 0.91255 0.75828 0.89965 0.90266 0.90304 0.92960 0.94640 0.93402 0.93188 0.91855 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.86 9.96 71.24 0.71 -1.15 16 2 C 0.15 4.23 6.75 43.14 0.29 4.52 16 3 N -0.50 -14.19 11.97 -51.10 -0.61 -14.80 16 4 S 0.30 7.37 23.69 -56.49 -1.34 6.03 16 5 C -0.13 -3.47 6.67 25.60 0.17 -3.30 16 6 C -0.09 -1.96 10.19 71.23 0.73 -1.23 16 7 C -0.24 -7.00 5.61 -20.72 -0.12 -7.12 16 8 C 0.60 18.53 5.18 86.64 0.45 18.98 16 9 O -0.56 -18.66 13.37 -4.07 -0.05 -18.72 16 10 N -0.68 -21.25 4.01 -425.88 -1.71 -22.95 16 11 C 0.17 4.89 0.45 3.68 0.00 4.89 16 12 C 0.07 1.80 5.66 71.98 0.41 2.21 16 13 O -0.58 -13.30 13.01 -148.98 -1.94 -15.24 16 14 C -0.12 -3.32 4.51 30.62 0.14 -3.18 16 15 C -0.12 -3.86 5.93 30.67 0.18 -3.67 16 16 C 0.12 4.68 4.18 86.36 0.36 5.04 16 17 N -0.61 -26.09 2.64 -699.10 -1.84 -27.94 16 18 C -0.24 -12.57 10.04 84.03 0.84 -11.72 16 19 H 0.06 3.19 8.06 -2.91 -0.02 3.17 16 20 C -0.03 -1.71 5.25 84.86 0.45 -1.26 16 21 N -0.96 -57.97 13.97 21.65 0.30 -57.67 16 22 Si 0.94 44.79 24.34 68.60 1.67 46.46 16 23 H -0.28 -12.68 6.72 99.48 0.67 -12.01 16 24 H -0.32 -15.74 7.11 99.48 0.71 -15.04 16 25 H -0.26 -11.53 6.41 99.48 0.64 -10.89 16 26 C 0.15 5.40 5.03 86.36 0.43 5.84 16 27 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.08 1.87 7.39 -2.39 -0.02 1.85 16 30 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.07 1.86 6.59 -2.39 -0.02 1.85 16 33 H 0.40 14.26 8.41 -92.71 -0.78 13.48 16 34 H 0.06 1.55 6.22 -2.39 -0.01 1.54 16 35 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.39 5.28 9.12 -74.06 -0.68 4.60 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.08 2.30 6.23 -2.39 -0.01 2.29 16 39 H 0.08 2.13 8.14 -2.39 -0.02 2.12 16 40 H 0.05 1.77 6.27 -2.39 -0.01 1.75 16 41 H 0.04 1.34 6.95 -2.39 -0.02 1.32 16 42 H 0.05 2.10 4.52 -2.39 -0.01 2.09 16 43 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 44 H 0.06 2.41 7.70 -2.39 -0.02 2.39 16 45 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -67.42 363.57 -0.99 -68.41 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: -0.52 Total: 27.57 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 5.04 Total: 8.84 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -3.86 Total: -123.36 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -1.99 Total: -33.96 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.67 Total: 46.46 kcal Atomic # 16 Polarization: 7.37 SS G_CDS: -1.34 Total: 6.03 kcal Total: -67.42 -0.99 -68.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279528602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.023 kcal (2) G-P(sol) polarization free energy of solvation -67.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds