Wall clock time and date at job start Tue Mar 31 2020 22:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34483 * 126.83148 * 2 1 4 4 N 1.36446 * 108.85557 * 180.26257 * 3 2 1 5 5 H 0.96996 * 124.85700 * 179.68555 * 4 3 2 6 6 C 1.34657 * 110.29789 * 359.70561 * 4 3 2 7 7 C 1.36773 * 108.39580 * 0.02562 * 6 4 3 8 8 C 1.47264 * 126.93864 * 179.97438 * 7 6 4 9 9 O 1.21633 * 119.99665 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00360 * 0.02849 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27622 * 10 8 7 12 12 H 1.09004 * 109.47372 * 34.71852 * 11 10 8 13 13 C 1.52997 * 109.47036 * 274.72131 * 11 10 8 14 14 C 1.52999 * 109.46963 * 154.72290 * 11 10 8 15 15 N 1.46500 * 109.47226 * 304.99288 * 14 11 10 16 16 C 1.46496 * 120.00407 * 270.00553 * 15 14 11 17 17 C 1.34775 * 119.99693 * 90.00269 * 15 14 11 18 18 O 1.21283 * 120.00190 * 0.02562 * 17 15 14 19 19 C 1.50694 * 120.00167 * 180.02562 * 17 15 14 20 20 S 1.81005 * 109.47524 * 179.97438 * 19 17 15 21 21 C 1.76201 * 100.00377 * 179.97438 * 20 19 17 22 22 H 1.08005 * 119.99501 * 0.02562 * 21 20 19 23 23 C 1.38789 * 119.99842 * 180.02562 * 21 20 19 24 24 N 1.31630 * 120.00526 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99889 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47035 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47242 * 120.00092 * 25 23 21 28 28 H 1.48495 * 109.47608 * 240.00117 * 25 23 21 29 29 H 1.08997 * 109.47670 * 270.20620 * 1 2 3 30 30 H 1.08998 * 109.47111 * 30.21482 * 1 2 3 31 31 H 1.09006 * 109.47056 * 150.20609 * 1 2 3 32 32 H 1.08001 * 125.57828 * 359.96521 * 3 2 1 33 33 H 1.07997 * 125.80405 * 180.02562 * 6 4 3 34 34 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 35 35 H 1.08997 * 109.47293 * 60.00168 * 13 11 10 36 36 H 1.09003 * 109.47189 * 180.02562 * 13 11 10 37 37 H 1.09009 * 109.47238 * 300.00198 * 13 11 10 38 38 H 1.08995 * 109.47415 * 64.99597 * 14 11 10 39 39 H 1.09008 * 109.47087 * 184.99936 * 14 11 10 40 40 H 1.08999 * 109.47536 * 90.00038 * 16 15 14 41 41 H 1.09001 * 109.46840 * 210.00202 * 16 15 14 42 42 H 1.09002 * 109.46797 * 329.99503 * 16 15 14 43 43 H 1.09000 * 109.47584 * 299.99944 * 19 17 15 44 44 H 1.09004 * 109.47426 * 60.00121 * 19 17 15 45 45 H 0.97000 * 120.00247 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6110 0.6553 -0.0059 5 1 4.3839 1.2413 -0.0115 6 6 3.6656 -0.6901 -0.0033 7 6 2.3863 -1.1740 0.0039 8 6 1.9750 -2.5880 0.0083 9 8 0.7937 -2.8777 0.0142 10 7 2.9074 -3.5612 0.0059 11 6 2.4981 -4.9678 0.0042 12 1 1.5849 -5.0798 -0.5803 13 6 2.2430 -5.4264 1.4414 14 6 3.6074 -5.8210 -0.6141 15 7 3.9343 -5.3063 -1.9462 16 6 3.2244 -5.8146 -3.1225 17 6 4.8883 -4.3651 -2.0894 18 8 5.4764 -3.9445 -1.1156 19 6 5.2242 -3.8351 -3.4595 20 16 6.5333 -2.5927 -3.3217 21 6 6.7218 -2.1571 -5.0186 22 1 6.1099 -2.6345 -5.7698 23 6 7.6564 -1.2006 -5.3898 24 7 8.4024 -0.6192 -4.4744 25 14 7.8567 -0.7393 -7.1889 26 1 6.9073 -1.5312 -8.0116 27 1 7.5740 0.7081 -7.3632 28 1 9.2475 -1.0276 -7.6220 29 1 -0.3634 0.0037 1.0276 30 1 -0.3633 0.8880 -0.5172 31 1 -0.3633 -0.8919 -0.5107 32 1 1.9868 2.1059 -0.0005 33 1 4.5664 -1.2859 -0.0064 34 1 3.8495 -3.3301 0.0009 35 1 1.4528 -4.8186 1.8819 36 1 1.9389 -6.4732 1.4402 37 1 3.1562 -5.3144 2.0260 38 1 4.4936 -5.7793 0.0191 39 1 3.2682 -6.8537 -0.6969 40 1 2.3391 -5.2051 -3.3041 41 1 3.8813 -5.7691 -3.9911 42 1 2.9246 -6.8478 -2.9475 43 1 5.5656 -4.6543 -4.0924 44 1 4.3373 -3.3804 -3.9008 45 1 9.0553 0.0496 -4.7338 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280981130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:38 Heat of formation + Delta-G solvation = -33.590670 kcal Electronic energy + Delta-G solvation = -27821.191046 eV Core-core repulsion = 23965.577531 eV Total energy + Delta-G solvation = -3855.613515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.99282 -39.94236 -38.60990 -36.06273 -34.54106 -32.49717 -32.23752 -31.60181 -29.64173 -28.97164 -27.27836 -26.35757 -25.71648 -25.23674 -23.29483 -21.13746 -19.72568 -19.47836 -18.95618 -18.12230 -17.70760 -16.76703 -16.23725 -16.15533 -15.71564 -14.95117 -14.86539 -14.73993 -14.12770 -13.90911 -13.79769 -13.52068 -13.32548 -13.17210 -13.10169 -12.85041 -12.72291 -12.53838 -12.52587 -12.31756 -12.21717 -12.16901 -11.86463 -11.70314 -11.25736 -11.12923 -11.10718 -11.07394 -10.80792 -9.86156 -9.58161 -9.47667 -9.13843 -8.91732 -8.56641 -8.38409 -8.32473 -8.09203 -6.57346 -6.29524 -3.99323 2.01309 2.57362 2.83818 2.92445 3.16372 3.21704 3.26230 3.37835 3.51109 3.63284 3.85872 4.13985 4.74441 4.79131 5.05182 5.06802 5.07129 5.14861 5.22312 5.27393 5.29487 5.34594 5.43633 5.51184 5.54947 5.60181 5.68998 5.71604 5.75063 5.84979 5.95773 5.99724 6.03235 6.08676 6.15882 6.22670 6.44083 6.51329 6.81490 6.96412 7.09482 7.43142 7.53791 7.61415 7.92675 8.28744 8.42399 8.65784 9.17193 10.77904 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009645 B = 0.004096 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.280387 B = 6833.701617 C = 8804.580835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.114 4.114 3 C -0.031 4.031 4 N -0.545 5.545 5 H 0.420 0.580 6 C 0.070 3.930 7 C -0.240 4.240 8 C 0.593 3.407 9 O -0.557 6.557 10 N -0.723 5.723 11 C 0.128 3.872 12 H 0.086 0.914 13 C -0.160 4.160 14 C 0.106 3.894 15 N -0.619 5.619 16 C 0.079 3.921 17 C 0.542 3.458 18 O -0.526 6.526 19 C -0.152 4.152 20 S -0.060 6.060 21 C -0.533 4.533 22 H 0.072 0.928 23 C 0.075 3.925 24 N -0.869 5.869 25 Si 0.917 3.083 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.279 1.279 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.166 0.834 33 H 0.176 0.824 34 H 0.409 0.591 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.834 -5.385 9.029 15.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.120 4.120 3 C -0.158 4.158 4 N -0.138 5.138 5 H 0.256 0.744 6 C -0.068 4.068 7 C -0.250 4.250 8 C 0.383 3.617 9 O -0.437 6.437 10 N -0.379 5.379 11 C 0.022 3.978 12 H 0.104 0.896 13 C -0.219 4.219 14 C -0.018 4.018 15 N -0.354 5.354 16 C -0.064 4.064 17 C 0.331 3.669 18 O -0.402 6.402 19 C -0.302 4.302 20 S 0.167 5.833 21 C -0.681 4.681 22 H 0.091 0.909 23 C -0.134 4.134 24 N -0.504 5.504 25 Si 0.743 3.257 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.205 1.205 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.183 0.817 33 H 0.193 0.807 34 H 0.249 0.751 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.556 -4.757 10.484 16.312 hybrid contribution 0.340 0.162 -2.468 2.496 sum -11.215 -4.594 8.017 14.531 Atomic orbital electron populations 1.20134 0.89668 1.02298 1.01468 1.20466 0.95332 0.90452 1.05794 1.21523 0.82643 0.99031 1.12621 1.41525 1.08318 1.06881 1.57124 0.74367 1.22161 0.98897 0.83891 1.01846 1.20283 0.92684 0.92643 1.19386 1.17420 0.85189 0.84218 0.74877 1.90678 1.17366 1.83970 1.51701 1.46177 1.10940 1.05128 1.75655 1.21312 0.98403 0.81372 0.96712 0.89595 1.22122 1.02399 1.01241 0.96164 1.21833 0.98770 0.96978 0.84168 1.47816 1.38785 1.41515 1.07289 1.21812 0.97290 0.99169 0.88154 1.20301 0.77630 0.77736 0.91263 1.90566 1.51089 1.57871 1.40718 1.23569 1.05992 1.04663 0.96020 1.85169 1.41649 1.44665 1.11820 1.22900 1.25353 1.27355 0.92512 0.90935 1.24957 0.94705 0.95123 0.98631 1.70012 1.21714 1.25661 1.33045 0.86144 0.78201 0.78396 0.82959 1.19572 1.20579 1.20525 0.92253 0.92662 0.90556 0.81701 0.80683 0.75103 0.91726 0.91790 0.92268 0.89195 0.89248 0.92608 0.90597 0.91174 0.89236 0.89257 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 9.97 36.01 0.36 -0.68 16 2 C -0.11 -1.69 6.35 -102.54 -0.65 -2.35 16 3 C -0.03 -0.38 11.82 -16.83 -0.20 -0.58 16 4 N -0.55 -6.84 5.90 -12.85 -0.08 -6.92 16 5 H 0.42 4.12 8.96 -40.82 -0.37 3.76 16 6 C 0.07 1.04 11.40 -16.84 -0.19 0.85 16 7 C -0.24 -3.91 6.29 -103.35 -0.65 -4.56 16 8 C 0.59 10.07 7.78 -12.59 -0.10 9.98 16 9 O -0.56 -10.49 14.98 5.25 0.08 -10.41 16 10 N -0.72 -10.79 4.47 -54.93 -0.25 -11.04 16 11 C 0.13 1.58 2.88 -67.93 -0.20 1.38 16 12 H 0.09 1.14 7.57 -51.93 -0.39 0.75 16 13 C -0.16 -1.68 9.49 37.16 0.35 -1.32 16 14 C 0.11 1.18 5.19 -4.04 -0.02 1.16 16 15 N -0.62 -8.18 2.77 -181.58 -0.50 -8.68 16 16 C 0.08 0.82 10.29 59.84 0.62 1.43 16 17 C 0.54 9.37 6.99 -10.99 -0.08 9.29 16 18 O -0.53 -10.19 13.18 5.55 0.07 -10.12 16 19 C -0.15 -2.95 4.71 36.00 0.17 -2.78 16 20 S -0.06 -1.51 20.57 -107.50 -2.21 -3.73 16 21 C -0.53 -14.66 9.50 30.94 0.29 -14.37 16 22 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 23 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 24 N -0.87 -25.14 13.22 55.49 0.73 -24.40 16 25 Si 0.92 20.92 29.55 -169.99 -5.02 15.90 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.16 6.86 -51.93 -0.36 0.80 16 32 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.18 2.59 7.45 -52.49 -0.39 2.20 16 34 H 0.41 6.43 4.77 -40.82 -0.19 6.23 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.09 1.08 7.42 -51.93 -0.39 0.69 16 39 H 0.09 0.71 7.89 -51.92 -0.41 0.30 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.79 6.44 -51.93 -0.33 0.46 16 42 H 0.07 0.53 7.89 -51.93 -0.41 0.12 16 43 H 0.09 1.62 7.40 -51.92 -0.38 1.24 16 44 H 0.09 1.69 8.11 -51.91 -0.42 1.27 16 45 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 387.91 15.07 5.85 5.85 Total: -1.00 -34.71 387.91 -8.27 -42.97 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -6.55 Total: 11.15 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -0.39 Total: -0.58 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.09 Total: -51.04 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: 0.15 Total: -20.53 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.71 -8.27 -42.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280981130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.384 kcal (2) G-P(sol) polarization free energy of solvation -34.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds