Wall clock time and date at job start Tue Mar 31 2020 22:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34483 * 126.83148 * 2 1 4 4 N 1.36446 * 108.85557 * 180.26257 * 3 2 1 5 5 H 0.96996 * 124.85700 * 179.68555 * 4 3 2 6 6 C 1.34657 * 110.29789 * 359.70561 * 4 3 2 7 7 C 1.36773 * 108.39580 * 0.02562 * 6 4 3 8 8 C 1.47264 * 126.93864 * 179.97438 * 7 6 4 9 9 O 1.21633 * 119.99665 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00360 * 0.02849 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27622 * 10 8 7 12 12 H 1.09004 * 109.47372 * 34.71852 * 11 10 8 13 13 C 1.52997 * 109.47036 * 274.72131 * 11 10 8 14 14 C 1.52999 * 109.46963 * 154.72290 * 11 10 8 15 15 N 1.46500 * 109.47226 * 304.99288 * 14 11 10 16 16 C 1.46496 * 120.00407 * 270.00553 * 15 14 11 17 17 C 1.34775 * 119.99693 * 90.00269 * 15 14 11 18 18 O 1.21283 * 120.00190 * 0.02562 * 17 15 14 19 19 C 1.50694 * 120.00167 * 180.02562 * 17 15 14 20 20 S 1.81005 * 109.47524 * 179.97438 * 19 17 15 21 21 C 1.76201 * 100.00377 * 179.97438 * 20 19 17 22 22 H 1.08005 * 119.99501 * 0.02562 * 21 20 19 23 23 C 1.38789 * 119.99842 * 180.02562 * 21 20 19 24 24 N 1.31630 * 120.00526 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99889 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47035 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47242 * 120.00092 * 25 23 21 28 28 H 1.48495 * 109.47608 * 240.00117 * 25 23 21 29 29 H 1.08997 * 109.47670 * 270.20620 * 1 2 3 30 30 H 1.08998 * 109.47111 * 30.21482 * 1 2 3 31 31 H 1.09006 * 109.47056 * 150.20609 * 1 2 3 32 32 H 1.08001 * 125.57828 * 359.96521 * 3 2 1 33 33 H 1.07997 * 125.80405 * 180.02562 * 6 4 3 34 34 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 35 35 H 1.08997 * 109.47293 * 60.00168 * 13 11 10 36 36 H 1.09003 * 109.47189 * 180.02562 * 13 11 10 37 37 H 1.09009 * 109.47238 * 300.00198 * 13 11 10 38 38 H 1.08995 * 109.47415 * 64.99597 * 14 11 10 39 39 H 1.09008 * 109.47087 * 184.99936 * 14 11 10 40 40 H 1.08999 * 109.47536 * 90.00038 * 16 15 14 41 41 H 1.09001 * 109.46840 * 210.00202 * 16 15 14 42 42 H 1.09002 * 109.46797 * 329.99503 * 16 15 14 43 43 H 1.09000 * 109.47584 * 299.99944 * 19 17 15 44 44 H 1.09004 * 109.47426 * 60.00121 * 19 17 15 45 45 H 0.97000 * 120.00247 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6110 0.6553 -0.0059 5 1 4.3839 1.2413 -0.0115 6 6 3.6656 -0.6901 -0.0033 7 6 2.3863 -1.1740 0.0039 8 6 1.9750 -2.5880 0.0083 9 8 0.7937 -2.8777 0.0142 10 7 2.9074 -3.5612 0.0059 11 6 2.4981 -4.9678 0.0042 12 1 1.5849 -5.0798 -0.5803 13 6 2.2430 -5.4264 1.4414 14 6 3.6074 -5.8210 -0.6141 15 7 3.9343 -5.3063 -1.9462 16 6 3.2244 -5.8146 -3.1225 17 6 4.8883 -4.3651 -2.0894 18 8 5.4764 -3.9445 -1.1156 19 6 5.2242 -3.8351 -3.4595 20 16 6.5333 -2.5927 -3.3217 21 6 6.7218 -2.1571 -5.0186 22 1 6.1099 -2.6345 -5.7698 23 6 7.6564 -1.2006 -5.3898 24 7 8.4024 -0.6192 -4.4744 25 14 7.8567 -0.7393 -7.1889 26 1 6.9073 -1.5312 -8.0116 27 1 7.5740 0.7081 -7.3632 28 1 9.2475 -1.0276 -7.6220 29 1 -0.3634 0.0037 1.0276 30 1 -0.3633 0.8880 -0.5172 31 1 -0.3633 -0.8919 -0.5107 32 1 1.9868 2.1059 -0.0005 33 1 4.5664 -1.2859 -0.0064 34 1 3.8495 -3.3301 0.0009 35 1 1.4528 -4.8186 1.8819 36 1 1.9389 -6.4732 1.4402 37 1 3.1562 -5.3144 2.0260 38 1 4.4936 -5.7793 0.0191 39 1 3.2682 -6.8537 -0.6969 40 1 2.3391 -5.2051 -3.3041 41 1 3.8813 -5.7691 -3.9911 42 1 2.9246 -6.8478 -2.9475 43 1 5.5656 -4.6543 -4.0924 44 1 4.3373 -3.3804 -3.9008 45 1 9.0553 0.0496 -4.7338 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280981130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:38 Heat of formation + Delta-G solvation = -56.600409 kcal Electronic energy + Delta-G solvation = -27822.188824 eV Core-core repulsion = 23965.577531 eV Total energy + Delta-G solvation = -3856.611293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.09888 -41.15271 -39.88439 -37.25911 -35.70666 -34.58515 -33.31543 -32.73805 -31.02370 -30.09330 -28.24482 -27.68444 -27.40246 -26.42729 -24.45679 -22.22686 -20.86662 -20.75002 -20.15600 -19.50638 -19.19511 -18.07767 -17.39913 -17.35475 -16.95572 -16.87820 -16.21635 -15.99498 -15.76253 -15.07204 -14.91153 -14.69571 -14.56757 -14.48122 -14.38379 -14.12797 -13.78405 -13.56225 -13.53735 -13.48531 -13.29752 -13.26569 -13.15007 -12.95774 -12.89353 -12.66498 -12.58401 -12.32988 -12.09124 -11.70472 -11.16069 -10.91481 -10.81231 -10.27491 -10.12020 -9.68216 -9.50924 -9.17105 -8.62600 -8.35905 -6.10683 0.79064 1.26151 1.38601 1.44667 1.51353 1.53582 1.57092 2.10198 2.26294 2.33891 2.53786 2.60754 2.98685 3.26835 3.71661 3.80009 3.99745 4.10938 4.15812 4.19705 4.25497 4.29010 4.38498 4.45830 4.49662 4.53278 4.65519 4.70164 4.74772 4.82860 4.89737 4.92320 4.94838 5.04683 5.16998 5.26517 5.35588 5.42034 5.49044 5.70140 5.86051 5.98657 6.19063 6.24848 6.62442 6.69897 7.07024 7.12346 7.39596 8.72853 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009645 B = 0.004096 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.280387 B = 6833.701617 C = 8804.580835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.147 4.147 3 C -0.012 4.012 4 N -0.536 5.536 5 H 0.432 0.568 6 C 0.060 3.940 7 C -0.268 4.268 8 C 0.586 3.414 9 O -0.584 6.584 10 N -0.721 5.721 11 C 0.124 3.876 12 H 0.078 0.922 13 C -0.152 4.152 14 C 0.108 3.892 15 N -0.609 5.609 16 C 0.071 3.929 17 C 0.539 3.461 18 O -0.554 6.554 19 C -0.131 4.131 20 S -0.124 6.124 21 C -0.549 4.549 22 H 0.075 0.925 23 C 0.021 3.979 24 N -0.906 5.906 25 Si 0.989 3.011 26 H -0.261 1.261 27 H -0.274 1.274 28 H -0.273 1.273 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.205 0.795 33 H 0.169 0.831 34 H 0.406 0.594 35 H 0.042 0.958 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.135 0.865 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.659 -6.100 8.159 16.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.153 4.153 3 C -0.140 4.140 4 N -0.131 5.131 5 H 0.272 0.728 6 C -0.079 4.079 7 C -0.279 4.279 8 C 0.376 3.624 9 O -0.467 6.467 10 N -0.375 5.375 11 C 0.018 3.982 12 H 0.096 0.904 13 C -0.211 4.211 14 C -0.014 4.014 15 N -0.342 5.342 16 C -0.071 4.071 17 C 0.327 3.673 18 O -0.432 6.432 19 C -0.282 4.282 20 S 0.103 5.897 21 C -0.697 4.697 22 H 0.093 0.907 23 C -0.184 4.184 24 N -0.543 5.543 25 Si 0.811 3.189 26 H -0.185 1.185 27 H -0.200 1.200 28 H -0.198 1.198 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.222 0.778 33 H 0.186 0.814 34 H 0.245 0.755 35 H 0.061 0.939 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.152 0.848 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.127 0.873 43 H 0.122 0.878 44 H 0.110 0.890 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.388 -5.511 9.616 16.622 hybrid contribution 0.535 0.319 -2.148 2.236 sum -11.853 -5.192 7.468 14.941 Atomic orbital electron populations 1.20077 0.88885 1.02156 1.01760 1.20824 0.96305 0.90690 1.07497 1.22093 0.81910 1.00198 1.09806 1.41591 1.09185 1.06234 1.56052 0.72829 1.22053 0.98272 0.84992 1.02538 1.20550 0.93744 0.93040 1.20556 1.17659 0.85101 0.84974 0.74696 1.90644 1.18268 1.84453 1.53318 1.46278 1.10341 1.06126 1.74758 1.21526 0.98446 0.80186 0.97993 0.90414 1.22050 1.01792 1.02678 0.94554 1.22047 0.98037 0.98714 0.82626 1.47816 1.37276 1.39856 1.09221 1.22072 0.96771 1.01253 0.86983 1.19963 0.78777 0.78697 0.89870 1.90560 1.52563 1.59108 1.40990 1.23405 1.03560 1.03084 0.98133 1.85212 1.44894 1.47626 1.11937 1.23225 1.25606 1.27693 0.93155 0.90661 1.25947 0.94200 0.94897 1.03384 1.70144 1.22430 1.26329 1.35386 0.85045 0.78451 0.78220 0.77147 1.18515 1.19963 1.19835 0.91768 0.90218 0.93131 0.77828 0.81405 0.75546 0.93857 0.88591 0.92039 0.89933 0.84762 0.92816 0.90648 0.87298 0.87810 0.88951 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.88 9.97 71.24 0.71 -1.17 16 2 C -0.15 -4.36 6.35 -18.52 -0.12 -4.48 16 3 C -0.01 -0.28 11.82 83.12 0.98 0.70 16 4 N -0.54 -13.24 5.90 -194.56 -1.15 -14.39 16 5 H 0.43 8.20 8.96 -92.71 -0.83 7.37 16 6 C 0.06 1.85 11.40 83.92 0.96 2.81 16 7 C -0.27 -9.05 6.29 -19.04 -0.12 -9.17 16 8 C 0.59 20.62 7.78 86.62 0.67 21.30 16 9 O -0.58 -22.82 14.98 -4.14 -0.06 -22.88 16 10 N -0.72 -21.97 4.47 -445.95 -1.99 -23.96 16 11 C 0.12 2.93 2.88 44.99 0.13 3.06 16 12 H 0.08 2.00 7.57 -2.39 -0.02 1.98 16 13 C -0.15 -2.99 9.49 71.98 0.68 -2.31 16 14 C 0.11 2.16 5.19 86.38 0.45 2.60 16 15 N -0.61 -15.03 2.77 -846.77 -2.35 -17.38 16 16 C 0.07 1.29 10.29 127.77 1.31 2.60 16 17 C 0.54 18.49 6.99 87.66 0.61 19.11 16 18 O -0.55 -21.82 13.18 -3.04 -0.04 -21.86 16 19 C -0.13 -5.06 4.71 71.23 0.34 -4.72 16 20 S -0.12 -6.44 20.57 -56.49 -1.16 -7.61 16 21 C -0.55 -30.45 9.50 67.95 0.65 -29.81 16 22 H 0.08 3.98 7.80 -2.91 -0.02 3.95 16 23 C 0.02 1.16 5.49 84.85 0.47 1.62 16 24 N -0.91 -53.20 13.22 21.65 0.29 -52.91 16 25 Si 0.99 42.65 29.55 68.60 2.03 44.68 16 26 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 27 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.58 6.86 -2.38 -0.02 1.56 16 32 H 0.20 3.08 8.06 -2.91 -0.02 3.05 16 33 H 0.17 5.33 7.45 -2.91 -0.02 5.31 16 34 H 0.41 13.18 4.77 -92.71 -0.44 12.74 16 35 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.08 1.84 7.42 -2.39 -0.02 1.83 16 39 H 0.13 1.53 7.89 -2.38 -0.02 1.51 16 40 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.39 6.44 -2.39 -0.02 1.38 16 42 H 0.11 1.17 7.89 -2.39 -0.02 1.15 16 43 H 0.10 3.68 7.40 -2.39 -0.02 3.67 16 44 H 0.09 3.49 8.11 -2.39 -0.02 3.47 16 45 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -78.13 387.91 3.03 -75.10 By element: Atomic # 1 Polarization: 39.31 SS G_CDS: -0.25 Total: 39.06 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 7.72 Total: 2.14 kcal Atomic # 7 Polarization: -103.44 SS G_CDS: -5.20 Total: -108.64 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -0.10 Total: -44.73 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: -6.44 SS G_CDS: -1.16 Total: -7.61 kcal Total: -78.13 3.03 -75.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280981130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.501 kcal (2) G-P(sol) polarization free energy of solvation -78.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds