Wall clock time and date at job start Tue Mar 31 2020 23:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29433 * 124.80204 * 2 1 4 4 C 1.30943 * 117.35860 * 179.69299 * 3 2 1 5 5 C 1.50699 * 122.90222 * 180.30501 * 4 3 2 6 6 C 1.35659 * 114.19438 * 0.48012 * 4 3 2 7 7 C 1.46682 * 126.12951 * 179.82606 * 6 4 3 8 8 O 1.21685 * 120.00221 * 48.87552 * 7 6 4 9 9 N 1.34778 * 120.00110 * 228.87068 * 7 6 4 10 10 C 1.46932 * 120.62758 * 355.49300 * 9 7 6 11 11 C 1.53188 * 108.77475 * 126.66612 * 10 9 7 12 12 C 1.53042 * 109.31365 * 54.63261 * 11 10 9 13 13 C 1.53033 * 109.54110 * 298.63751 * 12 11 10 14 14 C 1.52999 * 109.52572 * 181.33026 * 13 12 11 15 15 O 1.42900 * 109.47079 * 180.14450 * 14 13 12 16 16 N 1.46507 * 109.49834 * 301.41058 * 13 12 11 17 17 C 1.36939 * 120.00122 * 179.83498 * 16 13 12 18 18 H 1.07997 * 119.99926 * 0.02562 * 17 16 13 19 19 C 1.38810 * 120.00110 * 180.02562 * 17 16 13 20 20 N 1.31622 * 119.99547 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00147 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.46975 * 90.00035 * 21 19 17 23 23 H 1.48502 * 109.46848 * 209.99809 * 21 19 17 24 24 H 1.48503 * 109.46861 * 329.99910 * 21 19 17 25 25 C 1.46922 * 120.63673 * 175.77399 * 9 7 6 26 26 S 1.70946 * 124.80516 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47701 * 270.04167 * 1 2 3 28 28 H 1.08998 * 109.47232 * 30.04891 * 1 2 3 29 29 H 1.09001 * 109.46957 * 150.04383 * 1 2 3 30 30 H 1.09004 * 109.47213 * 270.19527 * 5 4 3 31 31 H 1.09001 * 109.47059 * 30.18620 * 5 4 3 32 32 H 1.08998 * 109.47527 * 150.19013 * 5 4 3 33 33 H 1.08995 * 109.58651 * 246.45100 * 10 9 7 34 34 H 1.08997 * 109.58815 * 6.88202 * 10 9 7 35 35 H 1.09002 * 109.50259 * 294.68446 * 11 10 9 36 36 H 1.08998 * 109.52771 * 174.60023 * 11 10 9 37 37 H 1.09003 * 109.45900 * 178.61419 * 12 11 10 38 38 H 1.08999 * 109.45928 * 58.66067 * 12 11 10 39 39 H 1.09000 * 109.47323 * 300.14302 * 14 13 12 40 40 H 1.08997 * 109.47172 * 60.14643 * 14 13 12 41 41 H 0.96700 * 114.00103 * 180.02562 * 15 14 13 42 42 H 0.96999 * 119.99817 * 359.83629 * 16 13 12 43 43 H 0.97004 * 119.99597 * 180.02562 * 20 19 17 44 44 H 1.09005 * 109.58234 * 353.12328 * 25 9 7 45 45 H 1.08998 * 109.58884 * 113.54075 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8932 0.0062 5 6 4.5197 2.0418 0.0137 6 6 3.9351 -0.4058 0.0016 7 6 5.3188 -0.8925 0.0030 8 8 6.1207 -0.4440 0.8008 9 7 5.7021 -1.8365 -0.8793 10 6 4.7240 -2.4585 -1.7822 11 6 5.2306 -2.3296 -3.2222 12 6 6.6390 -2.9205 -3.3180 13 6 7.5847 -2.1408 -2.4017 14 6 8.9994 -2.7107 -2.5228 15 8 9.8808 -1.9840 -1.6642 16 7 7.5911 -0.7290 -2.7930 17 6 8.3671 0.1678 -2.1082 18 1 8.9747 -0.1658 -1.2800 19 6 8.3728 1.5055 -2.4786 20 7 7.6327 1.9119 -3.4883 21 14 9.4319 2.7287 -1.5450 22 1 10.7736 2.8049 -2.1767 23 1 8.7908 4.0677 -1.5816 24 1 9.5731 2.2858 -0.1346 25 6 7.1048 -2.2676 -0.9524 26 16 2.4827 -1.4036 0.0006 27 1 -0.3634 0.0007 1.0276 28 1 -0.3633 0.8895 -0.5146 29 1 -0.3633 -0.8904 -0.5132 30 1 4.7575 2.3232 -1.0121 31 1 4.0752 2.8926 0.5301 32 1 5.4319 1.7403 0.5286 33 1 4.6103 -3.5122 -1.5278 34 1 3.7638 -1.9515 -1.6860 35 1 5.2575 -1.2774 -3.5056 36 1 4.5629 -2.8701 -3.8931 37 1 6.9922 -2.8523 -4.3470 38 1 6.6158 -3.9661 -3.0109 39 1 8.9940 -3.7614 -2.2327 40 1 9.3405 -2.6203 -3.5541 41 1 10.7972 -2.2916 -1.6900 42 1 7.0457 -0.4295 -3.5370 43 1 7.6369 2.8467 -3.7474 44 1 7.7155 -1.6347 -0.3085 45 1 7.1852 -3.3057 -0.6303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281185896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:50 Heat of formation + Delta-G solvation = -15.506337 kcal Electronic energy + Delta-G solvation = -29402.891443 eV Core-core repulsion = 25548.062123 eV Total energy + Delta-G solvation = -3854.829320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.25327 -39.39185 -37.62441 -35.75644 -33.84507 -32.89444 -32.24544 -31.08318 -29.19969 -28.79658 -28.06572 -25.41874 -25.02729 -23.48936 -22.79839 -21.76527 -21.09272 -18.77138 -18.17039 -17.79925 -17.26446 -16.55445 -16.20106 -15.81458 -15.13822 -15.02395 -14.43328 -14.26996 -14.19137 -13.87169 -13.51976 -13.38797 -13.24306 -13.14825 -13.07226 -12.71372 -12.47139 -12.36751 -12.06804 -11.91104 -11.82253 -11.60676 -11.22280 -11.18476 -10.84586 -10.70932 -10.63125 -10.49314 -10.16697 -9.79218 -9.72189 -9.55571 -9.42494 -9.09039 -8.98813 -8.79848 -8.49915 -8.08631 -6.80958 -5.56269 -2.82321 0.50466 1.22898 1.62733 2.74907 3.20792 3.58015 3.63799 3.66708 3.69786 4.06398 4.74278 4.79036 4.89934 4.92364 5.08277 5.19850 5.22499 5.27111 5.38532 5.42344 5.46638 5.60993 5.66232 5.70201 5.76979 5.85804 5.88262 6.01641 6.06112 6.07996 6.13064 6.17396 6.25491 6.26490 6.36220 6.59626 6.73444 6.77659 6.86752 7.06066 7.75318 7.88155 8.16586 8.36657 8.61115 8.63357 9.75008 10.22415 10.58364 11.67015 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011916 B = 0.005307 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.172810 B = 5275.154281 C = 6620.284970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.043 3.957 3 N -0.472 5.472 4 C 0.142 3.858 5 C -0.091 4.091 6 C -0.276 4.276 7 C 0.604 3.396 8 O -0.515 6.515 9 N -0.583 5.583 10 C 0.100 3.900 11 C -0.130 4.130 12 C -0.115 4.115 13 C 0.188 3.812 14 C 0.077 3.923 15 O -0.540 6.540 16 N -0.702 5.702 17 C -0.200 4.200 18 H 0.092 0.908 19 C -0.021 4.021 20 N -0.945 5.945 21 Si 0.898 3.102 22 H -0.296 1.296 23 H -0.296 1.296 24 H -0.281 1.281 25 C 0.113 3.887 26 S 0.147 5.853 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.024 0.976 40 H 0.040 0.960 41 H 0.354 0.646 42 H 0.382 0.618 43 H 0.249 0.751 44 H 0.106 0.894 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.092 -12.820 2.871 17.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.233 4.233 3 N -0.187 5.187 4 C 0.007 3.993 5 C -0.150 4.150 6 C -0.399 4.399 7 C 0.389 3.611 8 O -0.391 6.391 9 N -0.315 5.315 10 C -0.024 4.024 11 C -0.168 4.168 12 C -0.153 4.153 13 C 0.094 3.906 14 C -0.004 4.004 15 O -0.343 6.343 16 N -0.343 5.343 17 C -0.331 4.331 18 H 0.109 0.891 19 C -0.214 4.214 20 N -0.595 5.595 21 Si 0.731 3.269 22 H -0.224 1.224 23 H -0.223 1.223 24 H -0.207 1.207 25 C -0.011 4.011 26 S 0.403 5.597 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.059 0.941 41 H 0.199 0.801 42 H 0.216 0.784 43 H 0.059 0.941 44 H 0.124 0.876 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.621 -12.721 3.562 18.270 hybrid contribution 1.445 1.204 -0.166 1.889 sum -11.175 -11.517 3.397 16.403 Atomic orbital electron populations 1.20455 0.85063 1.04291 1.03853 1.27325 1.01864 0.91592 1.02543 1.66053 1.04567 1.31289 1.16831 1.20562 0.89633 0.93709 0.95441 1.20603 0.96515 0.93395 1.04522 1.25475 0.98157 0.96957 1.19291 1.16545 0.84478 0.78935 0.81176 1.90809 1.52432 1.56824 1.39041 1.47613 1.09590 1.38765 1.35550 1.21943 0.92421 0.97540 0.90501 1.21836 0.96327 1.03287 0.95335 1.21624 0.94958 0.98500 1.00236 1.19950 0.90816 0.87639 0.92157 1.22738 0.92231 0.92247 0.93223 1.86877 1.20799 1.60475 1.66133 1.42424 1.53043 1.00636 1.38168 1.19527 1.16026 0.87655 1.09912 0.89088 1.24633 1.00788 0.97076 0.98928 1.69662 1.44585 1.15095 1.30192 0.86278 0.79825 0.81079 0.79745 1.22375 1.22306 1.20681 1.22183 0.80422 0.98137 1.00403 1.83697 0.96461 1.11863 1.67696 0.89548 0.89130 0.90048 0.89267 0.90887 0.88725 0.91677 0.90327 0.90019 0.91326 0.91372 0.91931 0.95822 0.94145 0.80119 0.78351 0.94146 0.87586 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.46 36.00 0.38 -0.25 16 2 C 0.04 0.56 7.38 -13.29 -0.10 0.46 16 3 N -0.47 -7.86 10.50 -7.71 -0.08 -7.94 16 4 C 0.14 2.64 6.79 -83.89 -0.57 2.07 16 5 C -0.09 -1.78 10.08 36.01 0.36 -1.42 16 6 C -0.28 -4.98 5.37 -37.10 -0.20 -5.18 16 7 C 0.60 12.47 7.20 -12.85 -0.09 12.38 16 8 O -0.51 -12.47 15.03 5.20 0.08 -12.40 16 9 N -0.58 -10.71 2.89 -174.31 -0.50 -11.21 16 10 C 0.10 1.44 5.97 -3.71 -0.02 1.42 16 11 C -0.13 -1.87 5.91 -26.61 -0.16 -2.03 16 12 C -0.12 -1.69 4.76 -26.69 -0.13 -1.82 16 13 C 0.19 3.50 0.68 -131.70 -0.09 3.41 16 14 C 0.08 1.31 6.08 37.16 0.23 1.53 16 15 O -0.54 -10.18 10.11 -35.23 -0.36 -10.53 16 16 N -0.70 -16.74 4.75 -47.12 -0.22 -16.96 16 17 C -0.20 -5.51 8.21 -15.06 -0.12 -5.63 16 18 H 0.09 2.59 5.28 -52.49 -0.28 2.32 16 19 C -0.02 -0.60 5.50 -17.43 -0.10 -0.70 16 20 N -0.94 -28.62 13.06 55.49 0.72 -27.90 16 21 Si 0.90 23.89 29.55 -169.99 -5.02 18.86 16 22 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 23 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 24 H -0.28 -7.53 7.11 56.52 0.40 -7.13 16 25 C 0.11 2.14 4.84 -3.71 -0.02 2.13 16 26 S 0.15 1.89 20.33 -107.50 -2.19 -0.30 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.09 2.05 6.47 -51.93 -0.34 1.71 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.10 4.22 -35.48 -0.15 0.95 16 35 H 0.08 1.48 6.75 -51.93 -0.35 1.13 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.35 4.89 9.12 45.56 0.42 5.31 16 42 H 0.38 9.80 6.43 -40.82 -0.26 9.54 16 43 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.11 2.47 5.72 -51.93 -0.30 2.17 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -35.22 366.76 -8.14 -43.36 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -5.47 Total: 13.12 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -0.63 Total: 6.37 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: -0.08 Total: -64.01 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.28 Total: -22.93 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -5.02 Total: 18.86 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.19 Total: -0.30 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.22 -8.14 -43.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281185896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.852 kcal (2) G-P(sol) polarization free energy of solvation -35.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds