Wall clock time and date at job start Tue Mar 31 2020 23:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29433 * 124.80204 * 2 1 4 4 C 1.30943 * 117.35860 * 179.69299 * 3 2 1 5 5 C 1.50699 * 122.90222 * 180.30501 * 4 3 2 6 6 C 1.35659 * 114.19438 * 0.48012 * 4 3 2 7 7 C 1.46682 * 126.12951 * 179.82606 * 6 4 3 8 8 O 1.21685 * 120.00221 * 48.87552 * 7 6 4 9 9 N 1.34778 * 120.00110 * 228.87068 * 7 6 4 10 10 C 1.46932 * 120.62758 * 355.49300 * 9 7 6 11 11 C 1.53188 * 108.77475 * 126.66612 * 10 9 7 12 12 C 1.53042 * 109.31365 * 54.63261 * 11 10 9 13 13 C 1.53033 * 109.54110 * 298.63751 * 12 11 10 14 14 C 1.52999 * 109.52572 * 181.33026 * 13 12 11 15 15 O 1.42900 * 109.47079 * 180.14450 * 14 13 12 16 16 N 1.46507 * 109.49834 * 301.41058 * 13 12 11 17 17 C 1.36939 * 120.00122 * 179.83498 * 16 13 12 18 18 H 1.07997 * 119.99926 * 0.02562 * 17 16 13 19 19 C 1.38810 * 120.00110 * 180.02562 * 17 16 13 20 20 N 1.31622 * 119.99547 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00147 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.46975 * 90.00035 * 21 19 17 23 23 H 1.48502 * 109.46848 * 209.99809 * 21 19 17 24 24 H 1.48503 * 109.46861 * 329.99910 * 21 19 17 25 25 C 1.46922 * 120.63673 * 175.77399 * 9 7 6 26 26 S 1.70946 * 124.80516 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47701 * 270.04167 * 1 2 3 28 28 H 1.08998 * 109.47232 * 30.04891 * 1 2 3 29 29 H 1.09001 * 109.46957 * 150.04383 * 1 2 3 30 30 H 1.09004 * 109.47213 * 270.19527 * 5 4 3 31 31 H 1.09001 * 109.47059 * 30.18620 * 5 4 3 32 32 H 1.08998 * 109.47527 * 150.19013 * 5 4 3 33 33 H 1.08995 * 109.58651 * 246.45100 * 10 9 7 34 34 H 1.08997 * 109.58815 * 6.88202 * 10 9 7 35 35 H 1.09002 * 109.50259 * 294.68446 * 11 10 9 36 36 H 1.08998 * 109.52771 * 174.60023 * 11 10 9 37 37 H 1.09003 * 109.45900 * 178.61419 * 12 11 10 38 38 H 1.08999 * 109.45928 * 58.66067 * 12 11 10 39 39 H 1.09000 * 109.47323 * 300.14302 * 14 13 12 40 40 H 1.08997 * 109.47172 * 60.14643 * 14 13 12 41 41 H 0.96700 * 114.00103 * 180.02562 * 15 14 13 42 42 H 0.96999 * 119.99817 * 359.83629 * 16 13 12 43 43 H 0.97004 * 119.99597 * 180.02562 * 20 19 17 44 44 H 1.09005 * 109.58234 * 353.12328 * 25 9 7 45 45 H 1.08998 * 109.58884 * 113.54075 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8932 0.0062 5 6 4.5197 2.0418 0.0137 6 6 3.9351 -0.4058 0.0016 7 6 5.3188 -0.8925 0.0030 8 8 6.1207 -0.4440 0.8008 9 7 5.7021 -1.8365 -0.8793 10 6 4.7240 -2.4585 -1.7822 11 6 5.2306 -2.3296 -3.2222 12 6 6.6390 -2.9205 -3.3180 13 6 7.5847 -2.1408 -2.4017 14 6 8.9994 -2.7107 -2.5228 15 8 9.8808 -1.9840 -1.6642 16 7 7.5911 -0.7290 -2.7930 17 6 8.3671 0.1678 -2.1082 18 1 8.9747 -0.1658 -1.2800 19 6 8.3728 1.5055 -2.4786 20 7 7.6327 1.9119 -3.4883 21 14 9.4319 2.7287 -1.5450 22 1 10.7736 2.8049 -2.1767 23 1 8.7908 4.0677 -1.5816 24 1 9.5731 2.2858 -0.1346 25 6 7.1048 -2.2676 -0.9524 26 16 2.4827 -1.4036 0.0006 27 1 -0.3634 0.0007 1.0276 28 1 -0.3633 0.8895 -0.5146 29 1 -0.3633 -0.8904 -0.5132 30 1 4.7575 2.3232 -1.0121 31 1 4.0752 2.8926 0.5301 32 1 5.4319 1.7403 0.5286 33 1 4.6103 -3.5122 -1.5278 34 1 3.7638 -1.9515 -1.6860 35 1 5.2575 -1.2774 -3.5056 36 1 4.5629 -2.8701 -3.8931 37 1 6.9922 -2.8523 -4.3470 38 1 6.6158 -3.9661 -3.0109 39 1 8.9940 -3.7614 -2.2327 40 1 9.3405 -2.6203 -3.5541 41 1 10.7972 -2.2916 -1.6900 42 1 7.0457 -0.4295 -3.5370 43 1 7.6369 2.8467 -3.7474 44 1 7.7155 -1.6347 -0.3085 45 1 7.1852 -3.3057 -0.6303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281185896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:49 Heat of formation + Delta-G solvation = -43.856545 kcal Electronic energy + Delta-G solvation = -29404.120801 eV Core-core repulsion = 25548.062123 eV Total energy + Delta-G solvation = -3856.058677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.62586 -40.71399 -39.14408 -37.17846 -35.58932 -34.17330 -33.83132 -32.58967 -30.63626 -30.23001 -29.55837 -26.74432 -26.42006 -25.53944 -23.90244 -23.06502 -22.43105 -20.22531 -19.58951 -19.07909 -19.07414 -17.90688 -17.78474 -17.27877 -16.61217 -16.38154 -15.97993 -15.75038 -15.66759 -15.36888 -15.00829 -14.83506 -14.56409 -14.44951 -14.27522 -14.05642 -13.79398 -13.61055 -13.47808 -13.26988 -13.15944 -12.99167 -12.91344 -12.72885 -12.58658 -12.49355 -12.09982 -12.03537 -11.85522 -11.41098 -11.33477 -11.17172 -10.84668 -10.72714 -10.55437 -10.29400 -9.71741 -9.55167 -8.80712 -7.80543 -5.01355 -0.69465 0.07258 0.46625 1.39076 1.42020 1.43846 1.50730 1.74983 2.26467 2.63482 2.99506 3.38887 3.55745 3.68160 3.87794 3.89700 3.90037 4.03155 4.07518 4.18744 4.29415 4.49260 4.51811 4.53653 4.55969 4.58429 4.62010 4.69677 4.74197 4.81095 4.83037 4.90108 4.98769 5.03371 5.07635 5.16938 5.22788 5.42536 5.48342 5.63824 5.92356 6.38573 6.44726 6.60910 7.13298 7.17796 7.53149 8.22198 8.44829 9.43572 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011916 B = 0.005307 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.172810 B = 5275.154281 C = 6620.284970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.049 3.951 3 N -0.503 5.503 4 C 0.126 3.874 5 C -0.083 4.083 6 C -0.319 4.319 7 C 0.592 3.408 8 O -0.572 6.572 9 N -0.584 5.584 10 C 0.094 3.906 11 C -0.126 4.126 12 C -0.108 4.108 13 C 0.174 3.826 14 C 0.077 3.923 15 O -0.574 6.574 16 N -0.710 5.710 17 C -0.168 4.168 18 H 0.080 0.920 19 C -0.083 4.083 20 N -0.974 5.974 21 Si 0.940 3.060 22 H -0.290 1.290 23 H -0.303 1.303 24 H -0.290 1.290 25 C 0.116 3.884 26 S 0.242 5.758 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.114 0.886 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.035 0.965 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.037 0.963 41 H 0.376 0.624 42 H 0.370 0.630 43 H 0.239 0.761 44 H 0.055 0.945 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.832 -16.986 2.493 22.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.226 4.226 3 N -0.219 5.219 4 C -0.011 4.011 5 C -0.142 4.142 6 C -0.443 4.443 7 C 0.379 3.621 8 O -0.452 6.452 9 N -0.314 5.314 10 C -0.029 4.029 11 C -0.164 4.164 12 C -0.146 4.146 13 C 0.083 3.917 14 C -0.003 4.003 15 O -0.380 6.380 16 N -0.349 5.349 17 C -0.300 4.300 18 H 0.098 0.902 19 C -0.273 4.273 20 N -0.629 5.629 21 Si 0.774 3.226 22 H -0.218 1.218 23 H -0.230 1.230 24 H -0.216 1.216 25 C -0.008 4.008 26 S 0.499 5.501 27 H 0.127 0.873 28 H 0.112 0.888 29 H 0.133 0.867 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.128 0.872 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.130 0.870 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.087 0.913 40 H 0.055 0.945 41 H 0.223 0.777 42 H 0.203 0.797 43 H 0.048 0.952 44 H 0.073 0.927 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.356 -16.987 3.171 23.117 hybrid contribution 2.200 2.295 0.009 3.179 sum -13.156 -14.692 3.180 19.976 Atomic orbital electron populations 1.20785 0.81197 1.06120 1.05792 1.28308 1.03973 0.91219 0.99075 1.66077 1.03579 1.33080 1.19169 1.20387 0.90576 0.93504 0.96610 1.20351 0.96234 0.95156 1.02472 1.25390 0.99387 0.98386 1.21125 1.17026 0.85320 0.78819 0.80965 1.90760 1.54304 1.58733 1.41438 1.47794 1.10096 1.38175 1.35326 1.22310 0.91396 0.99540 0.89608 1.21820 0.97372 1.01124 0.96099 1.21643 0.93632 0.99977 0.99359 1.20452 0.93221 0.85269 0.92796 1.22702 0.90553 0.94153 0.92892 1.86793 1.22684 1.61914 1.66654 1.42538 1.52108 1.02830 1.37382 1.19603 1.14179 0.88091 1.08175 0.90209 1.25109 1.03043 0.98631 1.00541 1.69764 1.46749 1.14429 1.31939 0.85581 0.79070 0.79586 0.78412 1.21800 1.23026 1.21638 1.22053 0.80344 0.98931 0.99460 1.83146 0.91924 1.09142 1.65863 0.87290 0.88757 0.86733 0.92014 0.89134 0.91837 0.87245 0.90100 0.94579 0.87040 0.91114 0.87532 0.91276 0.94493 0.77664 0.79665 0.95172 0.92666 0.89719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.46 71.23 0.75 -0.21 16 2 C 0.05 1.16 7.38 88.46 0.65 1.81 16 3 N -0.50 -16.52 10.50 -178.29 -1.87 -18.40 16 4 C 0.13 4.87 6.79 42.09 0.29 5.15 16 5 C -0.08 -3.55 10.08 71.24 0.72 -2.83 16 6 C -0.32 -11.67 5.37 23.88 0.13 -11.54 16 7 C 0.59 25.29 7.20 86.45 0.62 25.91 16 8 O -0.57 -29.71 15.03 -4.30 -0.06 -29.78 16 9 N -0.58 -20.99 2.89 -823.62 -2.38 -23.37 16 10 C 0.09 2.38 5.97 86.36 0.52 2.90 16 11 C -0.13 -3.25 5.91 30.67 0.18 -3.07 16 12 C -0.11 -2.78 4.76 30.62 0.15 -2.63 16 13 C 0.17 6.23 0.68 3.68 0.00 6.23 16 14 C 0.08 2.45 6.08 71.98 0.44 2.89 16 15 O -0.57 -21.39 10.11 -148.98 -1.51 -22.90 16 16 N -0.71 -34.60 4.75 -303.00 -1.44 -36.04 16 17 C -0.17 -9.62 8.21 84.03 0.69 -8.93 16 18 H 0.08 4.76 5.28 -2.91 -0.02 4.75 16 19 C -0.08 -5.10 5.50 84.86 0.47 -4.63 16 20 N -0.97 -62.11 13.06 21.65 0.28 -61.83 16 21 Si 0.94 51.82 29.55 68.60 2.03 53.85 16 22 H -0.29 -15.49 7.11 99.48 0.71 -14.78 16 23 H -0.30 -16.85 7.11 99.48 0.71 -16.14 16 24 H -0.29 -16.16 7.11 99.48 0.71 -15.45 16 25 C 0.12 4.32 4.84 86.36 0.42 4.74 16 26 S 0.24 5.47 20.33 -56.49 -1.15 4.32 16 27 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 2.89 8.14 -2.38 -0.02 2.87 16 31 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 32 H 0.06 3.07 6.47 -2.39 -0.02 3.05 16 33 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 2.01 4.22 -12.85 -0.05 1.96 16 35 H 0.04 1.28 6.75 -2.39 -0.02 1.26 16 36 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.38 10.05 9.12 -74.06 -0.68 9.37 16 42 H 0.37 19.65 6.43 -92.71 -0.60 19.06 16 43 H 0.24 15.17 8.31 -92.71 -0.77 14.40 16 44 H 0.05 2.65 5.72 -2.38 -0.01 2.64 16 45 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -86.19 366.76 -0.36 -86.54 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: -0.27 Total: 31.81 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 6.01 Total: 15.78 kcal Atomic # 7 Polarization: -134.22 SS G_CDS: -5.41 Total: -139.63 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: -1.57 Total: -52.68 kcal Atomic # 14 Polarization: 51.82 SS G_CDS: 2.03 Total: 53.85 kcal Atomic # 16 Polarization: 5.47 SS G_CDS: -1.15 Total: 4.32 kcal Total: -86.19 -0.36 -86.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281185896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.687 kcal (2) G-P(sol) polarization free energy of solvation -86.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds