Wall clock time and date at job start Tue Mar 31 2020 22:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35456 * 128.00926 * 2 1 4 4 O 1.34035 * 106.44981 * 180.23155 * 3 2 1 5 5 N 1.20930 * 111.56387 * 359.75312 * 4 3 2 6 6 C 1.30167 * 111.60503 * 359.97438 * 5 4 3 7 7 C 1.50703 * 126.80348 * 179.97438 * 6 5 4 8 8 N 1.46890 * 109.47189 * 90.02362 * 7 6 5 9 9 C 1.46901 * 110.99958 * 180.02562 * 8 7 6 10 10 H 1.08999 * 110.30932 * 327.17785 * 9 8 7 11 11 C 1.54395 * 110.34375 * 89.46423 * 9 8 7 12 12 N 1.48427 * 104.65420 * 142.73741 * 11 9 8 13 13 C 1.34778 * 127.98094 * 140.37453 * 12 11 9 14 14 O 1.21280 * 120.00307 * 0.10982 * 13 12 11 15 15 C 1.50707 * 120.00034 * 180.10683 * 13 12 11 16 16 S 1.81001 * 109.46854 * 180.02562 * 15 13 12 17 17 C 1.76207 * 99.99583 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99993 * 359.97438 * 17 16 15 19 19 C 1.38804 * 119.99626 * 179.97438 * 17 16 15 20 20 N 1.31623 * 120.00242 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99746 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47114 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47083 * 119.99855 * 21 19 17 24 24 H 1.48509 * 109.46844 * 239.99967 * 21 19 17 25 25 C 1.48146 * 104.18376 * 320.44270 * 12 11 9 26 26 C 1.54289 * 110.34318 * 204.99856 * 9 8 7 27 27 H 1.08997 * 110.34001 * 122.25724 * 26 9 8 28 28 C 1.52994 * 110.34095 * 0.02562 * 26 9 8 29 29 H 1.08994 * 109.47147 * 270.16640 * 1 2 3 30 30 H 1.09010 * 109.47145 * 30.16481 * 1 2 3 31 31 H 1.09006 * 109.47142 * 150.16252 * 1 2 3 32 32 H 1.08006 * 126.77312 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.46693 * 330.02387 * 7 6 5 34 34 H 1.08999 * 109.47128 * 210.03029 * 7 6 5 35 35 H 1.00902 * 111.00363 * 303.95268 * 8 7 6 36 36 H 1.09004 * 110.40266 * 261.52495 * 11 9 8 37 37 H 1.09006 * 110.40687 * 23.83364 * 11 9 8 38 38 H 1.08996 * 109.47034 * 299.99703 * 15 13 12 39 39 H 1.08998 * 109.46990 * 60.00388 * 15 13 12 40 40 H 0.97000 * 120.00550 * 180.02562 * 20 19 17 41 41 H 1.09002 * 110.40776 * 280.72897 * 25 12 11 42 42 H 1.09002 * 110.40863 * 158.41306 * 25 12 11 43 43 H 1.09001 * 109.47260 * 303.00728 * 28 26 9 44 44 H 1.09000 * 109.47306 * 63.00864 * 28 26 9 45 45 H 1.09004 * 109.46825 * 183.00716 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3411 1.0673 0.0000 4 8 3.5876 0.5747 -0.0052 5 7 3.5877 -0.6346 -0.0034 6 6 2.3776 -1.1139 0.0037 7 6 1.9826 -2.5683 0.0074 8 7 1.8612 -3.0391 1.3935 9 6 1.4771 -4.4564 1.4363 10 1 0.8333 -4.6996 0.5910 11 6 2.7338 -5.3534 1.4321 12 7 2.3939 -6.4800 2.3367 13 6 2.6920 -7.7855 2.1838 14 8 3.3142 -8.1555 1.2108 15 6 2.2521 -8.7855 3.2219 16 16 2.8000 -10.4406 2.7355 17 6 2.1690 -11.3808 4.0856 18 1 1.6294 -10.8884 4.8811 19 6 2.3654 -12.7542 4.1267 20 7 3.0225 -13.3544 3.1569 21 14 1.6958 -13.7511 5.5576 22 1 1.0004 -12.8468 6.5084 23 1 0.7386 -14.7659 5.0489 24 1 2.8168 -14.4328 6.2534 25 6 1.6496 -5.8419 3.4474 26 6 0.7623 -4.7785 2.7651 27 1 -0.2319 -5.1816 2.5725 28 6 0.6690 -3.5244 3.6364 29 1 -0.3633 0.0030 1.0276 30 1 -0.3634 0.8886 -0.5164 31 1 -0.3634 -0.8915 -0.5113 32 1 2.0576 2.1095 0.0004 33 1 2.7437 -3.1527 -0.5095 34 1 1.0260 -2.6863 -0.5016 35 1 2.7162 -2.8810 1.9054 36 1 2.9346 -5.7215 0.4259 37 1 3.5943 -4.8038 1.8137 38 1 2.6913 -8.5263 4.1852 39 1 1.1652 -8.7713 3.3025 40 1 3.1595 -14.3143 3.1854 41 1 2.3404 -5.3693 4.1457 42 1 1.0326 -6.5775 3.9635 43 1 1.6689 -3.1260 3.8081 44 1 0.0611 -2.7746 3.1301 45 1 0.2104 -3.7792 4.5919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281376191.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:25 Heat of formation + Delta-G solvation = 34.026260 kcal Electronic energy + Delta-G solvation = -26408.029755 eV Core-core repulsion = 22555.348330 eV Total energy + Delta-G solvation = -3852.681425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.29659 -40.11191 -38.07122 -36.23279 -34.40545 -32.78784 -32.43865 -32.06523 -30.13162 -28.59635 -28.09041 -26.30340 -25.78728 -25.41535 -23.32329 -22.04232 -21.51585 -19.80673 -19.40323 -18.00715 -17.92522 -17.64744 -16.81208 -16.13640 -16.00472 -15.40800 -15.21865 -14.81383 -14.78601 -14.23865 -13.98493 -13.80901 -13.70298 -13.64378 -13.28202 -13.24735 -13.00262 -12.73024 -12.55344 -12.48093 -12.23808 -12.04902 -11.84662 -11.52599 -11.41859 -11.07786 -11.02342 -10.94550 -10.80131 -10.76538 -10.40383 -9.81834 -9.73395 -9.45628 -9.08403 -8.93645 -8.57973 -8.24164 -6.51506 -6.22596 -3.93407 1.12548 1.77586 2.83516 2.89985 3.02600 3.20984 3.24808 3.30386 3.54010 3.66359 3.95249 4.11389 4.19016 4.35302 4.43067 4.48432 4.67531 4.73389 4.86969 5.01520 5.01641 5.12192 5.12635 5.13517 5.19197 5.27628 5.35385 5.40045 5.41542 5.45115 5.51815 5.52597 5.67222 5.69540 5.78375 5.85216 5.91487 5.98812 6.11563 6.17290 6.26459 6.55952 6.85364 7.58996 7.68815 7.89716 8.34593 8.52574 9.22724 10.84914 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030470 B = 0.001903 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.724250 B =14710.654776 C =15232.431146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.183 4.183 3 C -0.071 4.071 4 O 0.101 5.899 5 N -0.359 5.359 6 C 0.021 3.979 7 C 0.134 3.866 8 N -0.665 5.665 9 C 0.078 3.922 10 H 0.093 0.907 11 C 0.080 3.920 12 N -0.628 5.628 13 C 0.554 3.446 14 O -0.516 6.516 15 C -0.146 4.146 16 S -0.061 6.061 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.102 3.898 26 C -0.096 4.096 27 H 0.084 0.916 28 C -0.120 4.120 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.215 0.785 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.347 0.653 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.053 0.947 44 H 0.066 0.934 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.544 31.334 -3.343 32.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.187 4.187 3 C -0.152 4.152 4 O 0.034 5.966 5 N -0.063 5.063 6 C -0.138 4.138 7 C 0.005 3.995 8 N -0.297 5.297 9 C -0.034 4.034 10 H 0.111 0.889 11 C -0.045 4.045 12 N -0.366 5.366 13 C 0.343 3.657 14 O -0.390 6.390 15 C -0.296 4.296 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.092 0.908 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.746 3.254 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.206 1.206 25 C -0.022 4.022 26 C -0.116 4.116 27 H 0.102 0.898 28 C -0.178 4.178 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.231 0.769 33 H 0.070 0.930 34 H 0.114 0.886 35 H 0.166 0.834 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.926 30.144 -4.827 31.098 hybrid contribution -1.069 -0.366 1.784 2.111 sum -6.994 29.778 -3.044 30.739 Atomic orbital electron populations 1.20079 0.87235 1.02909 1.02967 1.21307 0.98769 0.91362 1.07285 1.25779 0.83177 1.01201 1.05030 1.84829 1.29156 1.15450 1.67141 1.73884 1.22455 0.91444 1.18478 1.23354 0.88461 0.98329 1.03673 1.20241 1.01591 0.86541 0.91167 1.60750 1.39861 1.17212 1.11839 1.22561 0.95941 0.85657 0.99197 0.88928 1.23032 0.96971 0.88266 0.96261 1.48968 1.57596 1.05580 1.24406 1.20036 0.78453 0.80197 0.86989 1.90712 1.39334 1.77739 1.31241 1.23495 1.04450 1.01478 1.00179 1.85418 1.73512 0.91879 1.32644 1.22899 1.41666 0.94768 1.08927 0.90848 1.25001 0.94940 0.96783 0.96900 1.70025 1.38403 1.10429 1.31403 0.86108 0.78660 0.79587 0.81091 1.19592 1.20548 1.20555 1.22537 0.94537 0.95279 0.89844 1.22129 0.98977 0.96013 0.94458 0.89789 1.21467 1.02071 0.96300 0.97933 0.90491 0.91318 0.90950 0.76895 0.92953 0.88572 0.83361 0.89970 0.91595 0.89278 0.89229 0.92218 0.91109 0.89852 0.92765 0.91506 0.93394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.37 36.00 0.37 0.05 16 2 C -0.18 -1.21 6.32 -104.42 -0.66 -1.87 16 3 C -0.07 -0.40 12.26 29.74 0.36 -0.03 16 4 O 0.10 0.88 11.20 17.19 0.19 1.07 16 5 N -0.36 -3.71 12.07 33.42 0.40 -3.31 16 6 C 0.02 0.18 6.84 -82.10 -0.56 -0.38 16 7 C 0.13 1.03 6.04 -4.98 -0.03 1.00 16 8 N -0.66 -5.04 4.57 -106.51 -0.49 -5.52 16 9 C 0.08 0.68 3.37 -66.31 -0.22 0.45 16 10 H 0.09 0.80 7.82 -51.93 -0.41 0.40 16 11 C 0.08 0.95 6.73 -2.25 -0.02 0.93 16 12 N -0.63 -9.16 3.33 -169.06 -0.56 -9.72 16 13 C 0.55 10.92 7.94 -10.98 -0.09 10.84 16 14 O -0.52 -12.25 16.15 5.56 0.09 -12.16 16 15 C -0.15 -3.03 5.13 36.01 0.18 -2.84 16 16 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 17 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 21 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C 0.10 1.09 6.45 -2.41 -0.02 1.08 16 26 C -0.10 -0.81 3.66 -89.22 -0.33 -1.14 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 C -0.12 -0.86 8.11 37.15 0.30 -0.56 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.19 8.14 -51.92 -0.42 -0.23 16 31 H 0.07 0.31 7.65 -51.93 -0.40 -0.09 16 32 H 0.21 0.29 8.06 -52.48 -0.42 -0.14 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.62 7.58 -51.93 -0.39 0.23 16 35 H 0.35 2.85 7.62 -39.29 -0.30 2.55 16 36 H 0.08 1.11 7.90 -51.93 -0.41 0.70 16 37 H 0.07 0.74 7.55 -51.93 -0.39 0.35 16 38 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 39 H 0.09 1.72 7.95 -51.92 -0.41 1.31 16 40 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.07 0.70 7.86 -51.93 -0.41 0.29 16 42 H 0.08 0.90 7.30 -51.93 -0.38 0.52 16 43 H 0.05 0.40 7.40 -51.93 -0.38 0.02 16 44 H 0.07 0.48 7.96 -51.93 -0.41 0.07 16 45 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 387.82 15.07 5.84 5.84 Total: -1.00 -35.62 387.82 -8.32 -43.94 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -6.80 Total: -1.64 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -0.50 Total: -5.49 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.09 Total: -44.11 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.28 Total: -11.09 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.62 -8.32 -43.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281376191.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.964 kcal (2) G-P(sol) polarization free energy of solvation -35.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds