Wall clock time and date at job start Tue Mar 31 2020 22:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35456 * 128.00926 * 2 1 4 4 O 1.34035 * 106.44981 * 180.23155 * 3 2 1 5 5 N 1.20930 * 111.56387 * 359.75312 * 4 3 2 6 6 C 1.30167 * 111.60503 * 359.97438 * 5 4 3 7 7 C 1.50703 * 126.80348 * 179.97438 * 6 5 4 8 8 N 1.46890 * 109.47189 * 90.02362 * 7 6 5 9 9 C 1.46901 * 110.99958 * 180.02562 * 8 7 6 10 10 H 1.08999 * 110.30932 * 327.17785 * 9 8 7 11 11 C 1.54395 * 110.34375 * 89.46423 * 9 8 7 12 12 N 1.48427 * 104.65420 * 142.73741 * 11 9 8 13 13 C 1.34778 * 127.98094 * 140.37453 * 12 11 9 14 14 O 1.21280 * 120.00307 * 0.10982 * 13 12 11 15 15 C 1.50707 * 120.00034 * 180.10683 * 13 12 11 16 16 S 1.81001 * 109.46854 * 180.02562 * 15 13 12 17 17 C 1.76207 * 99.99583 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99993 * 359.97438 * 17 16 15 19 19 C 1.38804 * 119.99626 * 179.97438 * 17 16 15 20 20 N 1.31623 * 120.00242 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99746 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47114 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47083 * 119.99855 * 21 19 17 24 24 H 1.48509 * 109.46844 * 239.99967 * 21 19 17 25 25 C 1.48146 * 104.18376 * 320.44270 * 12 11 9 26 26 C 1.54289 * 110.34318 * 204.99856 * 9 8 7 27 27 H 1.08997 * 110.34001 * 122.25724 * 26 9 8 28 28 C 1.52994 * 110.34095 * 0.02562 * 26 9 8 29 29 H 1.08994 * 109.47147 * 270.16640 * 1 2 3 30 30 H 1.09010 * 109.47145 * 30.16481 * 1 2 3 31 31 H 1.09006 * 109.47142 * 150.16252 * 1 2 3 32 32 H 1.08006 * 126.77312 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.46693 * 330.02387 * 7 6 5 34 34 H 1.08999 * 109.47128 * 210.03029 * 7 6 5 35 35 H 1.00902 * 111.00363 * 303.95268 * 8 7 6 36 36 H 1.09004 * 110.40266 * 261.52495 * 11 9 8 37 37 H 1.09006 * 110.40687 * 23.83364 * 11 9 8 38 38 H 1.08996 * 109.47034 * 299.99703 * 15 13 12 39 39 H 1.08998 * 109.46990 * 60.00388 * 15 13 12 40 40 H 0.97000 * 120.00550 * 180.02562 * 20 19 17 41 41 H 1.09002 * 110.40776 * 280.72897 * 25 12 11 42 42 H 1.09002 * 110.40863 * 158.41306 * 25 12 11 43 43 H 1.09001 * 109.47260 * 303.00728 * 28 26 9 44 44 H 1.09000 * 109.47306 * 63.00864 * 28 26 9 45 45 H 1.09004 * 109.46825 * 183.00716 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3411 1.0673 0.0000 4 8 3.5876 0.5747 -0.0052 5 7 3.5877 -0.6346 -0.0034 6 6 2.3776 -1.1139 0.0037 7 6 1.9826 -2.5683 0.0074 8 7 1.8612 -3.0391 1.3935 9 6 1.4771 -4.4564 1.4363 10 1 0.8333 -4.6996 0.5910 11 6 2.7338 -5.3534 1.4321 12 7 2.3939 -6.4800 2.3367 13 6 2.6920 -7.7855 2.1838 14 8 3.3142 -8.1555 1.2108 15 6 2.2521 -8.7855 3.2219 16 16 2.8000 -10.4406 2.7355 17 6 2.1690 -11.3808 4.0856 18 1 1.6294 -10.8884 4.8811 19 6 2.3654 -12.7542 4.1267 20 7 3.0225 -13.3544 3.1569 21 14 1.6958 -13.7511 5.5576 22 1 1.0004 -12.8468 6.5084 23 1 0.7386 -14.7659 5.0489 24 1 2.8168 -14.4328 6.2534 25 6 1.6496 -5.8419 3.4474 26 6 0.7623 -4.7785 2.7651 27 1 -0.2319 -5.1816 2.5725 28 6 0.6690 -3.5244 3.6364 29 1 -0.3633 0.0030 1.0276 30 1 -0.3634 0.8886 -0.5164 31 1 -0.3634 -0.8915 -0.5113 32 1 2.0576 2.1095 0.0004 33 1 2.7437 -3.1527 -0.5095 34 1 1.0260 -2.6863 -0.5016 35 1 2.7162 -2.8810 1.9054 36 1 2.9346 -5.7215 0.4259 37 1 3.5943 -4.8038 1.8137 38 1 2.6913 -8.5263 4.1852 39 1 1.1652 -8.7713 3.3025 40 1 3.1595 -14.3143 3.1854 41 1 2.3404 -5.3693 4.1457 42 1 1.0326 -6.5775 3.9635 43 1 1.6689 -3.1260 3.8081 44 1 0.0611 -2.7746 3.1301 45 1 0.2104 -3.7792 4.5919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281376191.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:24 Heat of formation + Delta-G solvation = 9.853849 kcal Electronic energy + Delta-G solvation = -26409.077949 eV Core-core repulsion = 22555.348330 eV Total energy + Delta-G solvation = -3853.729620 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.87859 -41.23596 -39.32930 -36.98091 -35.13725 -34.60833 -33.56076 -32.77023 -31.50940 -29.34326 -28.79850 -27.71888 -27.15410 -26.47723 -24.26223 -22.57464 -22.04902 -20.84683 -20.57716 -19.62039 -18.57775 -18.49841 -18.12825 -17.18481 -17.00300 -16.89895 -16.52374 -15.99025 -15.91194 -15.75831 -14.97040 -14.73073 -14.64543 -14.35137 -14.17711 -14.05124 -13.96108 -13.59843 -13.57454 -13.33467 -13.21824 -13.03805 -12.98077 -12.92548 -12.82696 -12.61208 -12.23893 -12.00938 -11.74811 -11.61464 -11.52846 -11.17794 -11.05121 -10.99125 -10.31065 -10.19145 -9.94718 -9.53202 -8.71112 -8.36745 -6.15961 0.62437 1.18478 1.24560 1.40727 1.42625 1.49222 1.55690 1.99003 2.25001 2.47934 2.97547 2.97776 3.19851 3.32384 3.51313 3.57449 3.62329 3.84157 3.93304 4.05964 4.13397 4.21486 4.27440 4.29170 4.39942 4.43577 4.51191 4.57299 4.68415 4.70010 4.75410 4.85884 4.92353 4.94053 4.97124 5.08255 5.10518 5.28647 5.36715 5.40073 5.44068 5.63967 5.83339 6.14530 6.18087 6.36327 7.03505 7.04449 7.36074 8.72881 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030470 B = 0.001903 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.724250 B =14710.654776 C =15232.431146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.194 4.194 3 C -0.059 4.059 4 O 0.087 5.913 5 N -0.398 5.398 6 C 0.009 3.991 7 C 0.135 3.865 8 N -0.650 5.650 9 C 0.091 3.909 10 H 0.097 0.903 11 C 0.077 3.923 12 N -0.621 5.621 13 C 0.552 3.448 14 O -0.570 6.570 15 C -0.118 4.118 16 S -0.152 6.152 17 C -0.545 4.545 18 H 0.084 0.916 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 1.001 2.999 22 H -0.255 1.255 23 H -0.273 1.273 24 H -0.274 1.274 25 C 0.094 3.906 26 C -0.086 4.086 27 H 0.092 0.908 28 C -0.112 4.112 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.256 0.744 33 H 0.038 0.962 34 H 0.111 0.889 35 H 0.345 0.655 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.271 0.729 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.945 33.767 -1.422 35.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.199 4.199 3 C -0.140 4.140 4 O 0.022 5.978 5 N -0.104 5.104 6 C -0.150 4.150 7 C 0.006 3.994 8 N -0.281 5.281 9 C -0.020 4.020 10 H 0.116 0.884 11 C -0.048 4.048 12 N -0.355 5.355 13 C 0.340 3.660 14 O -0.448 6.448 15 C -0.269 4.269 16 S 0.075 5.925 17 C -0.692 4.692 18 H 0.102 0.898 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.822 3.178 22 H -0.179 1.179 23 H -0.198 1.198 24 H -0.199 1.199 25 C -0.028 4.028 26 C -0.106 4.106 27 H 0.110 0.890 28 C -0.170 4.170 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.272 0.728 33 H 0.056 0.944 34 H 0.129 0.871 35 H 0.164 0.836 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.080 0.920 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.352 32.659 -2.884 33.833 hybrid contribution -0.324 -0.911 1.150 1.502 sum -8.677 31.748 -1.735 32.958 Atomic orbital electron populations 1.20135 0.85499 1.03802 1.03419 1.21648 0.99931 0.90780 1.07521 1.26586 0.81776 1.02824 1.02785 1.84777 1.30739 1.14971 1.67340 1.73883 1.23722 0.92372 1.20441 1.23600 0.88703 0.99044 1.03610 1.20268 1.01840 0.86258 0.91019 1.60801 1.39591 1.15917 1.11781 1.22449 0.94244 0.85506 0.99846 0.88442 1.23267 0.99141 0.87691 0.94676 1.48880 1.56340 1.04466 1.25856 1.19791 0.78366 0.81738 0.86073 1.90689 1.42010 1.79051 1.33082 1.23281 1.05399 0.97243 1.00973 1.85619 1.74862 0.97569 1.34476 1.23223 1.41744 0.95365 1.08914 0.89792 1.26166 0.94966 0.98074 1.00034 1.70190 1.39874 1.10927 1.33827 0.84875 0.78046 0.77719 0.77115 1.17870 1.19834 1.19946 1.22898 0.94980 0.95834 0.89104 1.22099 0.98559 0.95948 0.93960 0.89011 1.21408 1.02181 0.95379 0.97998 0.90150 0.89469 0.91074 0.72844 0.94423 0.87121 0.83578 0.92087 0.90792 0.87606 0.87267 0.91952 0.89540 0.89368 0.92921 0.91020 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.37 71.23 0.74 0.32 16 2 C -0.19 -2.18 6.32 -19.74 -0.12 -2.30 16 3 C -0.06 -0.53 12.26 67.18 0.82 0.29 16 4 O 0.09 1.44 11.20 71.67 0.80 2.24 16 5 N -0.40 -8.19 12.07 -49.56 -0.60 -8.79 16 6 C 0.01 0.15 6.84 43.58 0.30 0.45 16 7 C 0.14 1.97 6.04 85.56 0.52 2.49 16 8 N -0.65 -8.81 4.57 -490.89 -2.24 -11.05 16 9 C 0.09 1.44 3.37 45.83 0.15 1.59 16 10 H 0.10 1.52 7.82 -2.39 -0.02 1.50 16 11 C 0.08 1.80 6.73 86.48 0.58 2.38 16 12 N -0.62 -17.64 3.33 -807.18 -2.69 -20.33 16 13 C 0.55 22.02 7.94 87.66 0.70 22.71 16 14 O -0.57 -28.24 16.15 -3.03 -0.05 -28.29 16 15 C -0.12 -4.89 5.13 71.24 0.37 -4.52 16 16 S -0.15 -8.67 20.57 -56.49 -1.16 -9.83 16 17 C -0.54 -31.41 9.50 67.96 0.65 -30.76 16 18 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 19 C 0.01 0.70 5.49 84.86 0.47 1.17 16 20 N -0.91 -56.52 13.22 21.65 0.29 -56.23 16 21 Si 1.00 43.76 29.55 68.60 2.03 45.79 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 C 0.09 1.79 6.45 86.53 0.56 2.35 16 26 C -0.09 -1.22 3.66 -9.89 -0.04 -1.26 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 C -0.11 -1.24 8.11 71.98 0.58 -0.65 16 29 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.09 0.19 8.14 -2.38 -0.02 0.17 16 31 H 0.07 0.44 7.65 -2.38 -0.02 0.42 16 32 H 0.26 -0.25 8.06 -2.91 -0.02 -0.27 16 33 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.11 1.27 7.58 -2.39 -0.02 1.25 16 35 H 0.34 5.20 7.62 -89.69 -0.68 4.51 16 36 H 0.06 1.71 7.90 -2.38 -0.02 1.69 16 37 H 0.07 1.63 7.55 -2.38 -0.02 1.61 16 38 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 39 H 0.11 4.07 7.95 -2.40 -0.02 4.05 16 40 H 0.27 15.55 8.31 -92.71 -0.77 14.77 16 41 H 0.09 1.45 7.86 -2.39 -0.02 1.43 16 42 H 0.09 1.65 7.30 -2.39 -0.02 1.63 16 43 H 0.05 0.62 7.40 -2.39 -0.02 0.60 16 44 H 0.07 0.77 7.96 -2.39 -0.02 0.76 16 45 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 Total: -1.00 -81.25 387.82 2.97 -78.28 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.32 Total: 13.95 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 6.27 Total: -5.74 kcal Atomic # 7 Polarization: -91.16 SS G_CDS: -5.24 Total: -96.40 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: 0.75 Total: -26.04 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -81.25 2.97 -78.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281376191.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.135 kcal (2) G-P(sol) polarization free energy of solvation -81.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds