Wall clock time and date at job start Tue Mar 31 2020 22:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29518 * 121.53391 * 2 1 4 4 S 1.69485 * 107.84610 * 179.97438 * 3 2 1 5 5 C 1.72017 * 96.02472 * 359.97438 * 4 3 2 6 6 C 1.50703 * 127.31653 * 179.97438 * 5 4 3 7 7 C 1.37898 * 105.36778 * 0.22495 * 5 4 3 8 8 C 1.47340 * 123.08694 * 179.75018 * 7 5 4 9 9 O 1.21608 * 119.99966 * 90.00391 * 8 7 5 10 10 N 1.34777 * 120.00009 * 270.00022 * 8 7 5 11 11 C 1.46928 * 120.63247 * 359.72124 * 10 8 7 12 12 C 1.53621 * 108.54504 * 126.36673 * 11 10 8 13 13 C 1.53043 * 109.23862 * 54.85979 * 12 11 10 14 14 O 1.42893 * 109.45009 * 58.52517 * 13 12 11 15 15 C 1.53004 * 109.45654 * 178.49354 * 13 12 11 16 16 N 1.46497 * 109.46907 * 305.06446 * 15 13 12 17 17 C 1.36944 * 119.99905 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99809 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99745 * 180.02562 * 17 16 15 20 20 N 1.31617 * 120.00165 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99717 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46903 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47418 * 119.99596 * 21 19 17 24 24 H 1.48507 * 109.46661 * 240.00048 * 21 19 17 25 25 C 1.53043 * 109.53856 * 298.50766 * 13 12 11 26 26 C 1.46928 * 120.63185 * 180.02562 * 10 8 7 27 27 H 1.08998 * 109.47005 * 89.97938 * 1 2 3 28 28 H 1.09000 * 109.47539 * 209.98083 * 1 2 3 29 29 H 1.09001 * 109.46956 * 329.98392 * 1 2 3 30 30 H 1.09002 * 109.47152 * 0.02562 * 6 5 4 31 31 H 1.09001 * 109.46980 * 240.02519 * 6 5 4 32 32 H 1.09004 * 109.47113 * 120.02499 * 6 5 4 33 33 H 1.08999 * 109.58534 * 246.20357 * 11 10 8 34 34 H 1.09006 * 109.58532 * 6.62581 * 11 10 8 35 35 H 1.08996 * 109.63200 * 294.86978 * 12 11 10 36 36 H 1.08999 * 109.43063 * 174.72844 * 12 11 10 37 37 H 0.96699 * 114.00030 * 59.93774 * 14 13 12 38 38 H 1.08995 * 109.47315 * 65.06525 * 15 13 12 39 39 H 1.09003 * 109.46542 * 185.06884 * 15 13 12 40 40 H 0.97000 * 120.00694 * 0.02562 * 16 15 13 41 41 H 0.96998 * 119.99907 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.49728 * 301.41971 * 25 13 12 43 43 H 1.08998 * 109.49893 * 181.31730 * 25 13 12 44 44 H 1.08998 * 109.58545 * 353.37606 * 26 10 8 45 45 H 1.09002 * 109.58442 * 113.79632 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8310 0.7029 0.0007 5 6 3.6017 -1.0019 0.0018 6 6 4.6677 -2.0672 0.0023 7 6 2.2351 -1.1868 -0.0037 8 6 1.6036 -2.5180 -0.0101 9 8 1.3391 -3.0706 1.0404 10 7 1.3189 -3.1232 -1.1802 11 6 1.6268 -2.4656 -2.4575 12 6 2.4717 -3.4247 -3.3097 13 6 1.7328 -4.7574 -3.4514 14 8 0.4572 -4.5324 -4.0547 15 6 2.5528 -5.7037 -4.3307 16 7 2.8397 -5.0541 -5.6120 17 6 3.5654 -5.7147 -6.5672 18 1 3.9265 -6.7143 -6.3758 19 6 3.8376 -5.0989 -7.7812 20 7 3.3980 -3.8804 -8.0143 21 14 4.8281 -5.9996 -9.0839 22 1 5.2025 -7.3449 -8.5788 23 1 4.0114 -6.1427 -10.3158 24 1 6.0584 -5.2271 -9.3923 25 6 1.5395 -5.3850 -2.0691 26 6 0.6887 -4.4503 -1.2028 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3634 -0.8901 0.5135 29 1 -0.3633 0.8899 0.5141 30 1 5.6511 -1.5971 0.0023 31 1 4.5616 -2.6877 -0.8876 32 1 4.5613 -2.6872 0.8925 33 1 0.6996 -2.2289 -2.9795 34 1 2.1876 -1.5496 -2.2711 35 1 3.4345 -3.5920 -2.8269 36 1 2.6297 -2.9895 -4.2965 37 1 0.5031 -4.1354 -4.9353 38 1 3.4893 -5.9463 -3.8285 39 1 1.9868 -6.6187 -4.5058 40 1 2.5157 -4.1561 -5.7839 41 1 3.5879 -3.4503 -8.8627 42 1 2.5112 -5.5338 -1.5980 43 1 1.0340 -6.3451 -2.1728 44 1 0.6303 -4.8443 -0.1883 45 1 -0.3133 -4.3718 -1.6248 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281645284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:03 Heat of formation + Delta-G solvation = -37.161666 kcal Electronic energy + Delta-G solvation = -28386.492292 eV Core-core repulsion = 24530.723927 eV Total energy + Delta-G solvation = -3855.768365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.84940 -39.20461 -38.01858 -35.54717 -34.09814 -33.59235 -32.03955 -31.26855 -30.38868 -29.88183 -28.45118 -26.69433 -24.30874 -23.41590 -23.00911 -21.90782 -20.91397 -19.88827 -18.67087 -18.35497 -17.56247 -17.06881 -16.13727 -15.87878 -15.14060 -15.05873 -14.86353 -14.66068 -14.38188 -14.15726 -13.82862 -13.79106 -13.62604 -13.36909 -13.15910 -12.93391 -12.83840 -12.60533 -12.51623 -12.44754 -12.32367 -11.95864 -11.60389 -11.40801 -11.15934 -11.12144 -11.07478 -10.91991 -10.89614 -10.36582 -10.16592 -10.02049 -9.74985 -9.60600 -9.46025 -9.00798 -8.86004 -8.65450 -7.06869 -5.89355 -3.18524 0.31884 1.10621 1.49922 1.91151 2.41868 2.96669 3.36291 3.42864 3.44472 4.08013 4.36827 4.47766 4.50195 4.62844 4.77871 4.91663 4.93845 5.02523 5.06586 5.12937 5.18734 5.23252 5.27979 5.34338 5.43399 5.45903 5.50689 5.58658 5.64333 5.75379 5.77854 5.82278 5.91037 5.96557 6.04412 6.27728 6.30536 6.34530 6.49029 6.62353 6.63805 7.27003 7.60689 7.98801 8.01025 8.29376 9.40658 9.93838 10.27937 11.33410 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014360 B = 0.003174 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.459638 B = 8820.629912 C = 9696.009479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.154 3.846 3 N -0.468 5.468 4 S 0.281 5.719 5 C -0.133 4.133 6 C -0.088 4.088 7 C -0.213 4.213 8 C 0.592 3.408 9 O -0.536 6.536 10 N -0.594 5.594 11 C 0.114 3.886 12 C -0.155 4.155 13 C 0.130 3.870 14 O -0.561 6.561 15 C 0.128 3.872 16 N -0.730 5.730 17 C -0.241 4.241 18 H 0.071 0.929 19 C -0.011 4.011 20 N -0.933 5.933 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.116 4.116 26 C 0.118 3.882 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.383 0.617 38 H 0.025 0.975 39 H 0.030 0.970 40 H 0.381 0.619 41 H 0.256 0.744 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.618 6.601 16.959 18.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.024 4.024 3 N -0.288 5.288 4 S 0.437 5.563 5 C -0.263 4.263 6 C -0.147 4.147 7 C -0.233 4.233 8 C 0.377 3.623 9 O -0.414 6.414 10 N -0.326 5.326 11 C -0.009 4.009 12 C -0.194 4.194 13 C 0.089 3.911 14 O -0.368 6.368 15 C 0.000 4.000 16 N -0.376 5.376 17 C -0.372 4.372 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.582 5.582 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.155 4.155 26 C -0.004 4.004 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.232 0.768 38 H 0.043 0.957 39 H 0.048 0.952 40 H 0.215 0.785 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.993 8.004 17.983 19.784 hybrid contribution 0.013 -1.490 -1.580 2.172 sum -1.980 6.513 16.403 17.760 Atomic orbital electron populations 1.20654 0.86140 1.04324 1.04073 1.21249 0.98919 0.86851 0.95406 1.76375 1.00298 1.25924 1.26251 1.84039 1.10362 0.95140 1.66766 1.26082 0.97171 1.02699 1.00367 1.20448 0.94547 0.95245 1.04426 1.20095 0.92598 0.95840 1.14784 1.17369 0.77674 0.83662 0.83634 1.90790 1.53777 1.65552 1.31255 1.48103 1.59857 1.19006 1.05645 1.21815 1.00288 0.95408 0.83359 1.22615 0.98916 0.96397 1.01454 1.21289 0.83767 0.93607 0.92417 1.86366 1.28690 1.85461 1.36288 1.21324 0.96174 0.94775 0.87690 1.42338 1.65338 1.17595 1.12337 1.19248 1.25660 0.98334 0.93989 0.91099 1.24721 1.01304 0.96599 0.98053 1.69634 1.50650 1.13255 1.24659 0.86116 0.79490 0.78737 0.81830 1.20543 1.21772 1.21820 1.21859 1.01080 0.99065 0.93489 1.21602 0.96509 0.81145 1.01132 0.89353 0.89948 0.89727 0.89986 0.89136 0.89286 0.90370 0.90574 0.90883 0.88907 0.76807 0.95688 0.95244 0.78459 0.93442 0.90439 0.89801 0.89184 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 9.96 36.00 0.36 -0.51 16 2 C 0.15 1.83 6.75 -83.20 -0.56 1.27 16 3 N -0.47 -5.80 11.97 32.50 0.39 -5.41 16 4 S 0.28 2.93 23.69 -107.50 -2.55 0.38 16 5 C -0.13 -1.44 6.54 -34.43 -0.23 -1.67 16 6 C -0.09 -0.78 10.09 36.01 0.36 -0.42 16 7 C -0.21 -2.61 3.61 -105.95 -0.38 -2.99 16 8 C 0.59 7.93 5.87 -12.56 -0.07 7.86 16 9 O -0.54 -8.68 16.52 5.27 0.09 -8.59 16 10 N -0.59 -7.31 2.97 -173.77 -0.52 -7.82 16 11 C 0.11 1.37 6.12 -3.49 -0.02 1.35 16 12 C -0.16 -2.15 4.89 -26.39 -0.13 -2.27 16 13 C 0.13 1.91 0.71 -90.57 -0.06 1.84 16 14 O -0.56 -8.52 11.70 -35.23 -0.41 -8.93 16 15 C 0.13 2.37 5.43 -4.04 -0.02 2.35 16 16 N -0.73 -16.73 5.07 -59.91 -0.30 -17.04 16 17 C -0.24 -6.38 9.99 -15.06 -0.15 -6.53 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -26.55 13.06 55.49 0.72 -25.83 16 21 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 C -0.12 -1.46 5.11 -26.59 -0.14 -1.60 16 26 C 0.12 1.43 6.19 -3.69 -0.02 1.41 16 27 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.82 7.39 -51.93 -0.38 0.43 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.93 7.81 -51.93 -0.41 0.52 16 34 H 0.08 0.89 6.23 -51.93 -0.32 0.57 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.09 1.47 6.53 -51.93 -0.34 1.13 16 37 H 0.38 5.85 8.19 45.56 0.37 6.22 16 38 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.38 8.87 5.55 -40.82 -0.23 8.64 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.09 1.11 7.00 -51.93 -0.36 0.74 16 45 H 0.08 0.97 7.81 -51.93 -0.41 0.56 16 LS Contribution 376.68 15.07 5.68 5.68 Total: -1.00 -31.17 376.68 -8.94 -40.11 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -5.85 Total: 11.19 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -1.16 Total: -0.30 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.29 Total: -56.10 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.33 Total: -17.53 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -2.55 Total: 0.38 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.17 -8.94 -40.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281645284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.948 kcal (2) G-P(sol) polarization free energy of solvation -31.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds