Wall clock time and date at job start Tue Mar 31 2020 22:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32766 * 123.45662 * 2 1 4 4 S 1.75511 * 110.57300 * 180.28128 * 3 2 1 5 5 C 1.70449 * 92.44462 * 359.64090 * 4 3 2 6 6 C 1.36011 * 110.81506 * 0.35135 * 5 4 3 7 7 C 1.47193 * 123.45789 * 179.74997 * 6 5 4 8 8 O 1.21634 * 119.99529 * 138.57594 * 7 6 5 9 9 N 1.34770 * 119.99985 * 318.57288 * 7 6 5 10 10 C 1.46501 * 120.00351 * 4.75997 * 9 7 6 11 11 C 1.46498 * 120.00093 * 184.75986 * 9 7 6 12 12 C 1.53002 * 109.47248 * 90.00084 * 11 9 7 13 13 H 1.09006 * 109.47121 * 294.99884 * 12 11 9 14 14 C 1.53005 * 109.47085 * 175.00374 * 12 11 9 15 15 N 1.46901 * 109.47155 * 54.99930 * 12 11 9 16 16 C 1.46896 * 111.00105 * 204.99914 * 15 12 11 17 17 C 1.50692 * 109.47374 * 180.02562 * 16 15 12 18 18 O 1.21292 * 119.99965 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00247 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99985 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00410 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99913 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00143 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99859 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47503 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47508 * 120.00060 * 24 22 20 27 27 H 1.48504 * 109.47064 * 239.99580 * 24 22 20 28 28 H 1.09008 * 109.46841 * 89.97805 * 1 2 3 29 29 H 1.09005 * 109.47519 * 209.98089 * 1 2 3 30 30 H 1.09005 * 109.47558 * 329.98405 * 1 2 3 31 31 H 1.07998 * 124.71803 * 0.02562 * 3 2 1 32 32 H 1.07995 * 124.59105 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47428 * 84.30435 * 10 9 7 34 34 H 1.08995 * 109.47614 * 204.30793 * 10 9 7 35 35 H 1.09004 * 109.46892 * 324.30573 * 10 9 7 36 36 H 1.09000 * 109.47588 * 209.99992 * 11 9 7 37 37 H 1.09000 * 109.46887 * 330.00147 * 11 9 7 38 38 H 1.09002 * 109.46492 * 180.02562 * 14 12 11 39 39 H 1.08994 * 109.46679 * 299.99280 * 14 12 11 40 40 H 1.08996 * 109.46915 * 59.99957 * 14 12 11 41 41 H 1.00905 * 110.99638 * 81.05183 * 15 12 11 42 42 H 1.09007 * 109.47358 * 300.00513 * 16 15 12 43 43 H 1.09003 * 109.47203 * 59.99911 * 16 15 12 44 44 H 0.96997 * 120.00219 * 359.97438 * 19 17 16 45 45 H 0.97004 * 120.00043 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2389 1.1077 0.0000 4 16 3.9498 0.7163 -0.0081 5 6 3.6411 -0.9599 -0.0007 6 6 2.3032 -1.2049 -0.0003 7 6 1.7262 -2.5590 0.0002 8 8 0.7613 -2.8086 0.6974 9 7 2.2669 -3.5222 -0.7720 10 6 3.4901 -3.2517 -1.5315 11 6 1.6315 -4.8398 -0.8520 12 6 0.6169 -4.8481 -1.9972 13 1 -0.1909 -4.1516 -1.7721 14 6 0.0442 -6.2575 -2.1609 15 7 1.2811 -4.4416 -3.2428 16 6 0.3161 -3.8710 -4.1920 17 6 1.0323 -3.4671 -5.4548 18 8 2.2290 -3.6382 -5.5545 19 7 0.3433 -2.9158 -6.4735 20 6 0.9950 -2.5479 -7.6222 21 1 2.0607 -2.6995 -7.7107 22 6 0.2845 -1.9800 -8.6726 23 7 -1.0122 -1.7959 -8.5652 24 14 1.1724 -1.4794 -10.2380 25 1 2.6187 -1.7903 -10.1078 26 1 0.6065 -2.2276 -11.3891 27 1 0.9981 -0.0216 -10.4614 28 1 -0.3633 0.0004 -1.0278 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3634 0.8899 0.5141 31 1 1.8374 2.1102 0.0004 32 1 4.4043 -1.7240 -0.0019 33 1 4.3578 -3.4088 -0.8909 34 1 3.5432 -3.9252 -2.3868 35 1 3.4793 -2.2195 -1.8820 36 1 2.3916 -5.5994 -1.0346 37 1 1.1213 -5.0547 0.0870 38 1 -0.6782 -6.2634 -2.9771 39 1 0.8519 -6.9538 -2.3861 40 1 -0.4486 -6.5590 -1.2367 41 1 1.7801 -5.2154 -3.6557 42 1 -0.4447 -4.6151 -4.4283 43 1 -0.1576 -2.9960 -3.7468 44 1 -0.6138 -2.7793 -6.3940 45 1 -1.5081 -1.3991 -9.2984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283595535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:50 Heat of formation + Delta-G solvation = -35.031861 kcal Electronic energy + Delta-G solvation = -27588.809203 eV Core-core repulsion = 23733.133193 eV Total energy + Delta-G solvation = -3855.676010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.21398 -38.43305 -37.47887 -36.56397 -34.91234 -33.88631 -31.61242 -31.20148 -30.54535 -27.97696 -27.12970 -26.45958 -26.03538 -24.04994 -23.40151 -21.28903 -20.20315 -19.24556 -18.41969 -17.89878 -17.68260 -16.74921 -16.20541 -15.76056 -15.35436 -15.30400 -14.76035 -14.56895 -14.24016 -13.94413 -13.77472 -13.57193 -13.47862 -13.29647 -13.12127 -12.71230 -12.46415 -12.41631 -12.28797 -12.15772 -12.09774 -11.87671 -11.67293 -11.64889 -11.52569 -11.32270 -11.06377 -11.02020 -10.92858 -10.35598 -10.23311 -9.77955 -9.52505 -8.92942 -8.73331 -8.41128 -8.33129 -7.99319 -7.93173 -6.42335 -3.83163 0.78211 1.48743 1.82741 2.04615 2.90755 3.15328 3.25927 3.32549 3.33542 3.90811 4.09693 4.34470 4.59028 4.66816 4.93077 5.05835 5.08761 5.15857 5.23080 5.24054 5.32933 5.42055 5.45290 5.47350 5.53186 5.66855 5.71681 5.72995 5.75457 5.78231 5.90107 5.94768 6.05330 6.09151 6.15937 6.19061 6.27795 6.41833 6.60245 7.20924 7.46412 7.54445 7.68186 8.05849 8.22875 8.60501 9.17233 9.54109 10.05119 10.75483 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009892 B = 0.003293 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.931252 B = 8500.314060 C =10043.065420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.053 4.053 3 C -0.241 4.241 4 S 0.169 5.831 5 C -0.213 4.213 6 C -0.142 4.142 7 C 0.580 3.420 8 O -0.544 6.544 9 N -0.586 5.586 10 C 0.083 3.917 11 C 0.130 3.870 12 C 0.064 3.936 13 H 0.080 0.920 14 C -0.180 4.180 15 N -0.658 5.658 16 C 0.053 3.947 17 C 0.443 3.557 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.167 0.833 32 H 0.173 0.827 33 H 0.042 0.958 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.347 0.653 42 H 0.042 0.958 43 H 0.082 0.918 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.191 -0.104 18.360 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.065 4.065 3 C -0.376 4.376 4 S 0.437 5.563 5 C -0.351 4.351 6 C -0.160 4.160 7 C 0.366 3.634 8 O -0.423 6.423 9 N -0.316 5.316 10 C -0.060 4.060 11 C 0.007 3.993 12 C -0.047 4.047 13 H 0.099 0.901 14 C -0.240 4.240 15 N -0.290 5.290 16 C -0.080 4.080 17 C 0.228 3.772 18 O -0.469 6.469 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.184 0.816 32 H 0.190 0.810 33 H 0.060 0.940 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.166 0.834 42 H 0.060 0.940 43 H 0.100 0.900 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.928 1.223 18.730 20.008 hybrid contribution -1.953 -1.280 -1.301 2.673 sum 4.975 -0.057 17.429 18.125 Atomic orbital electron populations 1.20636 0.89005 1.03790 1.02893 1.19795 0.97318 0.89924 0.99427 1.25252 0.96317 1.02537 1.13500 1.82963 1.05864 0.97236 1.70273 1.25780 0.99663 1.02461 1.07149 1.20081 0.92325 0.94337 1.09285 1.17652 0.82732 0.83574 0.79395 1.90731 1.27572 1.81802 1.42206 1.47400 1.27038 1.12242 1.44890 1.22000 0.84021 1.03939 0.95996 1.21509 0.95902 0.83572 0.98349 1.22039 0.96142 0.95360 0.91207 0.90149 1.22449 1.01611 0.97567 1.02376 1.60195 1.26984 1.37351 1.04427 1.21663 0.93875 0.99488 0.92954 1.19805 0.88128 0.84343 0.84917 1.90502 1.14749 1.59561 1.82050 1.41877 1.10563 1.53973 1.13657 1.19737 0.94926 1.36960 0.91157 0.87904 1.25258 0.95571 0.97432 0.99685 1.69623 1.06457 1.44566 1.33641 0.85816 0.79572 0.78118 0.80928 1.19230 1.20778 1.20747 0.90914 0.89493 0.91488 0.81561 0.80998 0.93956 0.88869 0.90934 0.90526 0.89587 0.92226 0.92251 0.91993 0.83360 0.93993 0.89999 0.77518 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 9.95 36.00 0.36 -0.91 16 2 C -0.05 -0.69 6.00 -104.06 -0.62 -1.31 16 3 C -0.24 -2.62 10.91 28.86 0.31 -2.31 16 4 S 0.17 1.64 23.02 -107.50 -2.48 -0.84 16 5 C -0.21 -2.35 8.59 29.93 0.26 -2.09 16 6 C -0.14 -1.91 5.21 -104.63 -0.55 -2.46 16 7 C 0.58 8.53 7.24 -12.63 -0.09 8.44 16 8 O -0.54 -9.21 14.77 5.25 0.08 -9.13 16 9 N -0.59 -7.59 2.73 -182.94 -0.50 -8.08 16 10 C 0.08 0.99 8.55 59.85 0.51 1.51 16 11 C 0.13 1.51 5.16 -4.04 -0.02 1.49 16 12 C 0.06 0.80 2.89 -67.71 -0.20 0.61 16 13 H 0.08 1.14 7.80 -51.93 -0.40 0.74 16 14 C -0.18 -1.88 9.16 37.16 0.34 -1.54 16 15 N -0.66 -9.94 4.25 -107.99 -0.46 -10.40 16 16 C 0.05 0.93 5.96 -4.98 -0.03 0.90 16 17 C 0.44 10.24 7.82 -10.99 -0.09 10.15 16 18 O -0.58 -15.25 15.78 5.55 0.09 -15.16 16 19 N -0.56 -14.22 5.29 -10.97 -0.06 -14.28 16 20 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 24 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 29 H 0.09 1.19 6.22 -51.93 -0.32 0.87 16 30 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 31 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.17 1.56 6.09 -52.49 -0.32 1.24 16 33 H 0.04 0.39 7.11 -51.93 -0.37 0.02 16 34 H 0.09 1.22 7.08 -51.93 -0.37 0.85 16 35 H 0.07 0.95 6.05 -51.93 -0.31 0.64 16 36 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 37 H 0.09 1.01 7.36 -51.93 -0.38 0.63 16 38 H 0.06 0.66 7.45 -51.93 -0.39 0.28 16 39 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.35 5.33 8.17 -39.29 -0.32 5.01 16 42 H 0.04 0.68 7.44 -51.92 -0.39 0.29 16 43 H 0.08 1.42 8.06 -51.93 -0.42 1.00 16 44 H 0.39 9.56 7.90 -40.82 -0.32 9.23 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 383.24 15.07 5.78 5.78 Total: -1.00 -32.15 383.24 -8.26 -40.41 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -6.36 Total: 15.05 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -0.05 Total: 4.55 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.29 Total: -56.58 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: 0.17 Total: -24.29 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.48 Total: -0.84 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.15 -8.26 -40.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283595535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.375 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds