Wall clock time and date at job start Tue Mar 31 2020 22:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32766 * 123.45662 * 2 1 4 4 S 1.75511 * 110.57300 * 180.28128 * 3 2 1 5 5 C 1.70449 * 92.44462 * 359.64090 * 4 3 2 6 6 C 1.36011 * 110.81506 * 0.35135 * 5 4 3 7 7 C 1.47193 * 123.45789 * 179.74997 * 6 5 4 8 8 O 1.21634 * 119.99529 * 138.57594 * 7 6 5 9 9 N 1.34770 * 119.99985 * 318.57288 * 7 6 5 10 10 C 1.46501 * 120.00351 * 4.75997 * 9 7 6 11 11 C 1.46498 * 120.00093 * 184.75986 * 9 7 6 12 12 C 1.53002 * 109.47248 * 90.00084 * 11 9 7 13 13 H 1.09006 * 109.47121 * 294.99884 * 12 11 9 14 14 C 1.53005 * 109.47085 * 175.00374 * 12 11 9 15 15 N 1.46901 * 109.47155 * 54.99930 * 12 11 9 16 16 C 1.46896 * 111.00105 * 204.99914 * 15 12 11 17 17 C 1.50692 * 109.47374 * 180.02562 * 16 15 12 18 18 O 1.21292 * 119.99965 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00247 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99985 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00410 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99913 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00143 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99859 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47503 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47508 * 120.00060 * 24 22 20 27 27 H 1.48504 * 109.47064 * 239.99580 * 24 22 20 28 28 H 1.09008 * 109.46841 * 89.97805 * 1 2 3 29 29 H 1.09005 * 109.47519 * 209.98089 * 1 2 3 30 30 H 1.09005 * 109.47558 * 329.98405 * 1 2 3 31 31 H 1.07998 * 124.71803 * 0.02562 * 3 2 1 32 32 H 1.07995 * 124.59105 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47428 * 84.30435 * 10 9 7 34 34 H 1.08995 * 109.47614 * 204.30793 * 10 9 7 35 35 H 1.09004 * 109.46892 * 324.30573 * 10 9 7 36 36 H 1.09000 * 109.47588 * 209.99992 * 11 9 7 37 37 H 1.09000 * 109.46887 * 330.00147 * 11 9 7 38 38 H 1.09002 * 109.46492 * 180.02562 * 14 12 11 39 39 H 1.08994 * 109.46679 * 299.99280 * 14 12 11 40 40 H 1.08996 * 109.46915 * 59.99957 * 14 12 11 41 41 H 1.00905 * 110.99638 * 81.05183 * 15 12 11 42 42 H 1.09007 * 109.47358 * 300.00513 * 16 15 12 43 43 H 1.09003 * 109.47203 * 59.99911 * 16 15 12 44 44 H 0.96997 * 120.00219 * 359.97438 * 19 17 16 45 45 H 0.97004 * 120.00043 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2389 1.1077 0.0000 4 16 3.9498 0.7163 -0.0081 5 6 3.6411 -0.9599 -0.0007 6 6 2.3032 -1.2049 -0.0003 7 6 1.7262 -2.5590 0.0002 8 8 0.7613 -2.8086 0.6974 9 7 2.2669 -3.5222 -0.7720 10 6 3.4901 -3.2517 -1.5315 11 6 1.6315 -4.8398 -0.8520 12 6 0.6169 -4.8481 -1.9972 13 1 -0.1909 -4.1516 -1.7721 14 6 0.0442 -6.2575 -2.1609 15 7 1.2811 -4.4416 -3.2428 16 6 0.3161 -3.8710 -4.1920 17 6 1.0323 -3.4671 -5.4548 18 8 2.2290 -3.6382 -5.5545 19 7 0.3433 -2.9158 -6.4735 20 6 0.9950 -2.5479 -7.6222 21 1 2.0607 -2.6995 -7.7107 22 6 0.2845 -1.9800 -8.6726 23 7 -1.0122 -1.7959 -8.5652 24 14 1.1724 -1.4794 -10.2380 25 1 2.6187 -1.7903 -10.1078 26 1 0.6065 -2.2276 -11.3891 27 1 0.9981 -0.0216 -10.4614 28 1 -0.3633 0.0004 -1.0278 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3634 0.8899 0.5141 31 1 1.8374 2.1102 0.0004 32 1 4.4043 -1.7240 -0.0019 33 1 4.3578 -3.4088 -0.8909 34 1 3.5432 -3.9252 -2.3868 35 1 3.4793 -2.2195 -1.8820 36 1 2.3916 -5.5994 -1.0346 37 1 1.1213 -5.0547 0.0870 38 1 -0.6782 -6.2634 -2.9771 39 1 0.8519 -6.9538 -2.3861 40 1 -0.4486 -6.5590 -1.2367 41 1 1.7801 -5.2154 -3.6557 42 1 -0.4447 -4.6151 -4.4283 43 1 -0.1576 -2.9960 -3.7468 44 1 -0.6138 -2.7793 -6.3940 45 1 -1.5081 -1.3991 -9.2984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283595535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:49 Heat of formation + Delta-G solvation = -56.537761 kcal Electronic energy + Delta-G solvation = -27589.741769 eV Core-core repulsion = 23733.133193 eV Total energy + Delta-G solvation = -3856.608576 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.24673 -40.17271 -38.55678 -37.71933 -36.15021 -35.76943 -33.29388 -32.59253 -31.64379 -28.90055 -28.15476 -27.91032 -27.15257 -25.73690 -24.40087 -22.30945 -21.29494 -20.98080 -19.90876 -19.38305 -18.56242 -17.92968 -17.56748 -17.10646 -16.61601 -16.49572 -16.28776 -16.09883 -15.61751 -15.30755 -15.01812 -14.76818 -14.51805 -14.38323 -14.26676 -13.85483 -13.65962 -13.56574 -13.41020 -13.37292 -13.21940 -13.10253 -12.98722 -12.81124 -12.78478 -12.58615 -12.46161 -12.37521 -12.10591 -11.93630 -11.87327 -11.50277 -10.86085 -10.36003 -10.00940 -9.80425 -9.72493 -9.23807 -9.11721 -8.46239 -5.94932 -0.09635 0.67458 0.95185 1.09976 1.36696 1.42001 1.56143 1.89416 2.05362 2.28337 2.33762 2.91382 3.21152 3.54681 3.70864 3.76259 3.95115 4.13084 4.22208 4.29763 4.32094 4.35901 4.42837 4.46754 4.54745 4.58293 4.61269 4.67272 4.73450 4.78945 4.83044 4.90004 4.96684 4.98651 5.15460 5.22594 5.29088 5.41475 5.48205 5.61813 5.87678 6.08202 6.41949 6.47633 6.59677 7.12809 7.16905 7.56423 8.10631 8.71562 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009892 B = 0.003293 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.931252 B = 8500.314060 C =10043.065420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.084 4.084 3 C -0.244 4.244 4 S 0.222 5.778 5 C -0.212 4.212 6 C -0.176 4.176 7 C 0.573 3.427 8 O -0.577 6.577 9 N -0.585 5.585 10 C 0.087 3.913 11 C 0.129 3.871 12 C 0.070 3.930 13 H 0.060 0.940 14 C -0.173 4.173 15 N -0.661 5.661 16 C 0.069 3.931 17 C 0.443 3.557 18 O -0.615 6.615 19 N -0.576 5.576 20 C -0.330 4.330 21 H 0.081 0.919 22 C -0.014 4.014 23 N -0.923 5.923 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.272 1.272 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.188 0.812 32 H 0.190 0.810 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.347 0.653 42 H 0.061 0.939 43 H 0.084 0.916 44 H 0.394 0.606 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.286 0.079 18.580 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.095 4.095 3 C -0.379 4.379 4 S 0.490 5.510 5 C -0.350 4.350 6 C -0.194 4.194 7 C 0.361 3.639 8 O -0.459 6.459 9 N -0.314 5.314 10 C -0.056 4.056 11 C 0.006 3.994 12 C -0.041 4.041 13 H 0.079 0.921 14 C -0.232 4.232 15 N -0.293 5.293 16 C -0.063 4.063 17 C 0.230 3.770 18 O -0.501 6.501 19 N -0.213 5.213 20 C -0.459 4.459 21 H 0.099 0.901 22 C -0.214 4.214 23 N -0.564 5.564 24 Si 0.816 3.184 25 H -0.195 1.195 26 H -0.197 1.197 27 H -0.198 1.198 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.205 0.795 32 H 0.207 0.793 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.167 0.833 42 H 0.079 0.921 43 H 0.102 0.898 44 H 0.227 0.773 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.018 1.392 18.958 20.631 hybrid contribution -2.222 -1.316 -1.313 2.898 sum 5.796 0.076 17.645 18.572 Atomic orbital electron populations 1.20554 0.89298 1.03746 1.02210 1.19961 0.97631 0.90606 1.01305 1.25596 0.97295 1.03014 1.11977 1.82786 1.04268 0.95478 1.68498 1.26069 0.99216 1.04177 1.05547 1.20144 0.93436 0.93936 1.11850 1.17947 0.82420 0.84341 0.79167 1.90698 1.29041 1.82429 1.43699 1.47511 1.27209 1.12406 1.44278 1.22010 0.84682 1.02738 0.96157 1.21606 0.96326 0.83646 0.97785 1.22004 0.95777 0.96233 0.90053 0.92130 1.22365 1.01856 0.96111 1.02890 1.60166 1.26826 1.37781 1.04541 1.21447 0.93965 1.00235 0.90668 1.20717 0.87923 0.82544 0.85794 1.90473 1.16342 1.60347 1.82895 1.41957 1.10663 1.54802 1.13847 1.19708 0.94357 1.38961 0.92911 0.90072 1.26046 0.96302 0.96778 1.02231 1.69690 1.07394 1.44624 1.34694 0.84874 0.78174 0.78118 0.77206 1.19540 1.19678 1.19776 0.91906 0.91611 0.89413 0.79474 0.79277 0.90849 0.89979 0.92318 0.88166 0.89613 0.92900 0.90928 0.90546 0.83307 0.92068 0.89785 0.77287 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.49 9.95 71.24 0.71 -1.78 16 2 C -0.08 -2.16 6.00 -19.47 -0.12 -2.28 16 3 C -0.24 -4.97 10.91 66.64 0.73 -4.25 16 4 S 0.22 3.83 23.02 -56.49 -1.30 2.53 16 5 C -0.21 -4.40 8.59 67.30 0.58 -3.82 16 6 C -0.18 -4.70 5.21 -19.87 -0.10 -4.81 16 7 C 0.57 17.07 7.24 86.60 0.63 17.69 16 8 O -0.58 -20.16 14.77 -4.14 -0.06 -20.22 16 9 N -0.58 -14.84 2.73 -850.94 -2.32 -17.17 16 10 C 0.09 1.97 8.55 127.77 1.09 3.07 16 11 C 0.13 2.87 5.16 86.38 0.45 3.31 16 12 C 0.07 1.70 2.89 44.92 0.13 1.83 16 13 H 0.06 1.73 7.80 -2.38 -0.02 1.71 16 14 C -0.17 -3.30 9.16 71.98 0.66 -2.64 16 15 N -0.66 -19.63 4.25 -495.56 -2.10 -21.73 16 16 C 0.07 2.42 5.96 85.56 0.51 2.93 16 17 C 0.44 20.74 7.82 87.65 0.69 21.43 16 18 O -0.61 -32.55 15.78 -3.07 -0.05 -32.60 16 19 N -0.58 -29.55 5.29 -306.99 -1.62 -31.17 16 20 C -0.33 -18.61 9.68 84.04 0.81 -17.79 16 21 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 22 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 23 N -0.92 -50.10 13.05 21.66 0.28 -49.81 16 24 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 28 H 0.06 1.63 8.14 -2.38 -0.02 1.62 16 29 H 0.06 1.92 6.22 -2.38 -0.01 1.90 16 30 H 0.09 1.73 8.13 -2.38 -0.02 1.71 16 31 H 0.19 2.84 8.06 -2.91 -0.02 2.82 16 32 H 0.19 3.04 6.09 -2.91 -0.02 3.03 16 33 H 0.07 1.20 7.11 -2.39 -0.02 1.18 16 34 H 0.08 2.07 7.08 -2.39 -0.02 2.05 16 35 H 0.06 1.51 6.05 -2.39 -0.01 1.49 16 36 H 0.10 1.75 8.07 -2.39 -0.02 1.73 16 37 H 0.09 1.95 7.36 -2.39 -0.02 1.93 16 38 H 0.05 1.09 7.45 -2.39 -0.02 1.07 16 39 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.35 10.37 8.17 -89.69 -0.73 9.64 16 42 H 0.06 1.92 7.44 -2.38 -0.02 1.90 16 43 H 0.08 2.93 8.06 -2.39 -0.02 2.91 16 44 H 0.39 19.55 7.90 -92.71 -0.73 18.82 16 45 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -70.44 383.24 1.65 -68.80 By element: Atomic # 1 Polarization: 44.45 SS G_CDS: -0.43 Total: 44.03 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 7.22 Total: 12.61 kcal Atomic # 7 Polarization: -114.12 SS G_CDS: -5.77 Total: -119.88 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -0.11 Total: -52.82 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: 3.83 SS G_CDS: -1.30 Total: 2.53 kcal Total: -70.44 1.65 -68.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283595535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.259 kcal (2) G-P(sol) polarization free energy of solvation -70.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds