Wall clock time and date at job start Tue Mar 31 2020 22:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.34485 * 126.16496 * 2 1 4 4 C 1.30250 * 108.70025 * 180.02562 * 3 2 1 5 5 O 1.33974 * 108.76338 * 359.97438 * 4 3 2 6 6 C 1.34325 * 126.16735 * 180.02562 * 2 1 3 7 7 C 1.50702 * 126.44374 * 359.95864 * 6 2 1 8 8 N 1.46908 * 109.47101 * 90.02157 * 7 6 2 9 9 C 1.46897 * 111.00083 * 180.02562 * 8 7 6 10 10 C 1.53776 * 113.61355 * 254.13894 * 9 8 7 11 11 C 1.53956 * 87.01916 * 220.04682 * 10 9 8 12 12 C 1.53000 * 113.53790 * 270.80910 * 11 10 9 13 13 N 1.46498 * 109.47303 * 272.49618 * 12 11 10 14 14 C 1.34772 * 120.00090 * 179.97438 * 13 12 11 15 15 O 1.21280 * 119.99861 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00050 * 179.97438 * 14 13 12 17 17 S 1.81000 * 109.46942 * 179.97438 * 16 14 13 18 18 C 1.76207 * 99.99822 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99702 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00110 * 179.97438 * 18 17 16 21 21 N 1.31627 * 119.99877 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99943 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47355 * 89.99833 * 22 20 18 24 24 H 1.48501 * 109.47211 * 209.99817 * 22 20 18 25 25 H 1.48503 * 109.47331 * 329.99766 * 22 20 18 26 26 C 1.53777 * 113.61578 * 156.52860 * 9 8 7 27 27 H 1.09001 * 109.47394 * 89.97807 * 1 2 3 28 28 H 1.09005 * 109.47558 * 209.97543 * 1 2 3 29 29 H 1.09005 * 109.47337 * 329.97480 * 1 2 3 30 30 H 1.07997 * 125.62207 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.46996 * 210.02003 * 7 6 2 32 32 H 1.09001 * 109.46826 * 330.02641 * 7 6 2 33 33 H 1.00903 * 110.99728 * 303.96073 * 8 7 6 34 34 H 1.09002 * 112.85032 * 25.32990 * 9 8 7 35 35 H 1.09006 * 113.61519 * 334.56208 * 10 9 8 36 36 H 1.09000 * 113.61755 * 105.46929 * 10 9 8 37 37 H 1.08997 * 113.74391 * 139.94075 * 11 10 9 38 38 H 1.09006 * 109.46962 * 32.49685 * 12 11 10 39 39 H 1.08998 * 109.47022 * 152.48908 * 12 11 10 40 40 H 0.96997 * 119.99724 * 359.97438 * 13 12 11 41 41 H 1.08994 * 109.47226 * 300.00457 * 16 14 13 42 42 H 1.09003 * 109.46758 * 60.00342 * 16 14 13 43 43 H 0.96999 * 119.99673 * 180.02562 * 21 20 18 44 44 H 1.08999 * 113.61550 * 254.52901 * 26 9 8 45 45 H 1.08998 * 113.61363 * 25.34796 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5430 0.6948 -0.0006 5 8 3.5734 -0.6446 -0.0003 6 6 2.2997 -1.0844 -0.0005 7 6 1.8493 -2.5225 -0.0003 8 7 1.7026 -2.9900 -1.3852 9 6 1.2632 -4.3911 -1.4242 10 6 2.3752 -5.3745 -1.8256 11 6 1.3105 -6.1145 -2.6557 12 6 0.5662 -7.1961 -1.8702 13 7 1.3064 -8.4575 -1.9545 14 6 0.8364 -9.5575 -1.3336 15 8 -0.1991 -9.5029 -0.7045 16 6 1.5975 -10.8552 -1.4208 17 16 0.7178 -12.1343 -0.4901 18 6 1.7973 -13.5017 -0.7542 19 1 2.6910 -13.3775 -1.3479 20 6 1.4997 -14.7383 -0.1984 21 7 2.3064 -15.7596 -0.3953 22 14 -0.0455 -14.9530 0.8290 23 1 -1.1728 -15.3547 -0.0504 24 1 0.1827 -16.0043 1.8526 25 1 -0.3751 -13.6706 1.5014 26 6 0.5536 -4.7781 -2.7325 27 1 -0.3634 0.0004 -1.0277 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3634 0.8898 0.5142 30 1 4.4065 1.3435 -0.0011 31 1 2.5901 -3.1352 0.5134 32 1 0.8914 -2.6032 0.5137 33 1 1.0691 -2.3981 -1.9014 34 1 0.7193 -4.6893 -0.5279 35 1 3.1620 -4.9215 -2.4289 36 1 2.7635 -5.9588 -0.9913 37 1 1.6735 -6.4668 -3.6212 38 1 0.4815 -6.8936 -0.8264 39 1 -0.4300 -7.3305 -2.2915 40 1 2.1347 -8.5010 -2.4573 41 1 1.6815 -11.1577 -2.4646 42 1 2.5941 -10.7209 -1.0001 43 1 2.0982 -16.6239 -0.0072 44 1 -0.5265 -4.8814 -2.6294 45 1 0.8403 -4.1607 -3.5838 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316813912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:51 Heat of formation + Delta-G solvation = 2.016553 kcal Electronic energy + Delta-G solvation = -25363.356271 eV Core-core repulsion = 21509.286801 eV Total energy + Delta-G solvation = -3854.069470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.76551 -40.19149 -38.90029 -35.98093 -35.44656 -34.02894 -32.44641 -31.82173 -29.94918 -28.60533 -26.78576 -26.16306 -25.62780 -25.17191 -22.86088 -22.62570 -21.20374 -20.49019 -19.26770 -17.81037 -17.59835 -17.25958 -16.77623 -16.39147 -16.22190 -15.61073 -15.46976 -15.20914 -14.94987 -14.89241 -14.34194 -13.87350 -13.80382 -13.76626 -13.56302 -13.41567 -13.06967 -12.80516 -12.71182 -12.67351 -12.44527 -12.21120 -11.81210 -11.45030 -11.31919 -11.24946 -11.01606 -10.93460 -10.87307 -10.63019 -10.60246 -9.86534 -9.54119 -9.25410 -9.04289 -9.00101 -8.92909 -8.51057 -6.92701 -6.29637 -4.01467 0.97406 2.19776 2.31630 2.75393 2.96343 3.28910 3.33131 3.49662 3.63192 3.65443 3.73309 4.04864 4.22620 4.31301 4.33287 4.34501 4.40848 4.44943 4.54761 4.73949 4.85289 4.91200 5.07234 5.09447 5.10857 5.15190 5.21174 5.27710 5.35733 5.39474 5.48893 5.51970 5.61178 5.68417 5.72017 5.76081 5.82898 5.87851 5.95106 6.01027 6.46640 6.52301 6.73991 7.26626 7.60235 7.93428 8.40943 8.47783 9.16557 10.79592 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025798 B = 0.001554 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.083000 B =18012.494479 C =18083.882916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.011 4.011 3 N -0.488 5.488 4 C 0.173 3.827 5 O -0.195 6.195 6 C -0.038 4.038 7 C 0.141 3.859 8 N -0.673 5.673 9 C 0.056 3.944 10 C -0.121 4.121 11 C -0.124 4.124 12 C 0.139 3.861 13 N -0.735 5.735 14 C 0.530 3.470 15 O -0.521 6.521 16 C -0.124 4.124 17 S -0.143 6.143 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.130 4.130 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.250 0.750 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.345 0.655 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.400 0.600 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.073 0.927 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.298 33.118 -3.412 33.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.132 4.132 3 N -0.217 5.217 4 C -0.054 4.054 5 O -0.080 6.080 6 C -0.092 4.092 7 C 0.012 3.988 8 N -0.305 5.305 9 C -0.054 4.054 10 C -0.159 4.159 11 C -0.143 4.143 12 C 0.015 3.985 13 N -0.389 5.389 14 C 0.316 3.684 15 O -0.396 6.396 16 C -0.275 4.275 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.168 4.168 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.265 0.735 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.164 0.836 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.234 0.766 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.885 33.454 -2.381 33.551 hybrid contribution 0.637 -0.824 -0.319 1.089 sum -0.248 32.631 -2.700 32.743 Atomic orbital electron populations 1.20154 0.86542 1.03467 1.02987 1.21556 0.97966 0.87692 1.05936 1.70366 1.01470 1.31714 1.18179 1.28042 0.97538 0.79423 1.00373 1.84465 1.30025 1.24439 1.69067 1.23014 0.80947 0.97371 1.07839 1.20327 1.00541 0.86436 0.91506 1.60656 1.54759 1.03241 1.11834 1.23177 0.97016 0.87268 0.97897 1.23152 0.96608 0.96254 0.99903 1.22460 0.97754 0.94093 1.00014 1.21084 0.95099 0.82364 0.99976 1.45931 1.27900 1.09559 1.55547 1.20281 0.85397 0.84598 0.78114 1.90697 1.23557 1.84848 1.40514 1.23279 1.03123 0.95482 1.05600 1.84782 1.35465 1.04260 1.67124 1.22323 1.11080 0.94608 1.38925 0.89381 1.24711 0.96797 0.94609 0.95176 1.69939 1.36816 1.01240 1.43674 0.86734 0.83338 0.80539 0.81220 1.19210 1.19940 1.15946 1.23170 0.99739 0.96289 0.97635 0.90585 0.90810 0.90421 0.73452 0.88786 0.91404 0.83610 0.90288 0.88984 0.91154 0.89298 0.91581 0.91374 0.76571 0.88484 0.88456 0.91944 0.90833 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.22 36.00 0.37 -0.04 16 2 C -0.01 -0.09 7.11 -82.81 -0.59 -0.68 16 3 N -0.49 -4.48 11.29 -11.18 -0.13 -4.60 16 4 C 0.17 1.18 13.23 52.09 0.69 1.87 16 5 O -0.19 -1.66 10.78 5.34 0.06 -1.60 16 6 C -0.04 -0.30 6.90 -35.69 -0.25 -0.55 16 7 C 0.14 0.88 5.87 -4.97 -0.03 0.85 16 8 N -0.67 -4.17 6.54 -107.13 -0.70 -4.87 16 9 C 0.06 0.34 3.77 -66.91 -0.25 0.09 16 10 C -0.12 -0.84 7.42 -25.83 -0.19 -1.04 16 11 C -0.12 -0.85 3.95 -89.72 -0.35 -1.21 16 12 C 0.14 1.39 5.35 -4.04 -0.02 1.37 16 13 N -0.73 -8.81 5.56 -60.30 -0.33 -9.15 16 14 C 0.53 9.17 7.85 -10.99 -0.09 9.08 16 15 O -0.52 -11.06 15.86 5.56 0.09 -10.97 16 16 C -0.12 -2.36 6.16 36.01 0.22 -2.14 16 17 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 18 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 19 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 20 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.48 13.97 55.49 0.78 -25.71 16 22 Si 0.86 21.72 27.74 -169.99 -4.71 17.00 16 23 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 25 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 26 C -0.13 -0.74 7.26 -25.92 -0.19 -0.92 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.29 7.16 -51.93 -0.37 -0.08 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.25 0.47 8.06 -52.49 -0.42 0.04 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.33 7.15 -51.93 -0.37 -0.04 16 33 H 0.34 1.87 8.55 -39.29 -0.34 1.53 16 34 H 0.08 0.51 7.46 -51.93 -0.39 0.12 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.72 7.39 -51.93 -0.38 0.33 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.40 3.72 8.47 -40.82 -0.35 3.37 16 41 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 42 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 45 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 391.92 15.07 5.91 5.91 Total: -1.00 -36.33 391.92 -8.35 -44.68 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.84 Total: 0.19 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -0.46 Total: -5.28 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -0.39 Total: -44.32 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.15 Total: -12.58 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.00 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.33 -8.35 -44.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316813912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.696 kcal (2) G-P(sol) polarization free energy of solvation -36.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds