Wall clock time and date at job start Tue Mar 31 2020 22:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.34485 * 126.16496 * 2 1 4 4 C 1.30250 * 108.70025 * 180.02562 * 3 2 1 5 5 O 1.33974 * 108.76338 * 359.97438 * 4 3 2 6 6 C 1.34325 * 126.16735 * 180.02562 * 2 1 3 7 7 C 1.50702 * 126.44374 * 359.95864 * 6 2 1 8 8 N 1.46908 * 109.47101 * 90.02157 * 7 6 2 9 9 C 1.46897 * 111.00083 * 180.02562 * 8 7 6 10 10 C 1.53776 * 113.61355 * 254.13894 * 9 8 7 11 11 C 1.53956 * 87.01916 * 220.04682 * 10 9 8 12 12 C 1.53000 * 113.53790 * 270.80910 * 11 10 9 13 13 N 1.46498 * 109.47303 * 272.49618 * 12 11 10 14 14 C 1.34772 * 120.00090 * 179.97438 * 13 12 11 15 15 O 1.21280 * 119.99861 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00050 * 179.97438 * 14 13 12 17 17 S 1.81000 * 109.46942 * 179.97438 * 16 14 13 18 18 C 1.76207 * 99.99822 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99702 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00110 * 179.97438 * 18 17 16 21 21 N 1.31627 * 119.99877 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99943 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47355 * 89.99833 * 22 20 18 24 24 H 1.48501 * 109.47211 * 209.99817 * 22 20 18 25 25 H 1.48503 * 109.47331 * 329.99766 * 22 20 18 26 26 C 1.53777 * 113.61578 * 156.52860 * 9 8 7 27 27 H 1.09001 * 109.47394 * 89.97807 * 1 2 3 28 28 H 1.09005 * 109.47558 * 209.97543 * 1 2 3 29 29 H 1.09005 * 109.47337 * 329.97480 * 1 2 3 30 30 H 1.07997 * 125.62207 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.46996 * 210.02003 * 7 6 2 32 32 H 1.09001 * 109.46826 * 330.02641 * 7 6 2 33 33 H 1.00903 * 110.99728 * 303.96073 * 8 7 6 34 34 H 1.09002 * 112.85032 * 25.32990 * 9 8 7 35 35 H 1.09006 * 113.61519 * 334.56208 * 10 9 8 36 36 H 1.09000 * 113.61755 * 105.46929 * 10 9 8 37 37 H 1.08997 * 113.74391 * 139.94075 * 11 10 9 38 38 H 1.09006 * 109.46962 * 32.49685 * 12 11 10 39 39 H 1.08998 * 109.47022 * 152.48908 * 12 11 10 40 40 H 0.96997 * 119.99724 * 359.97438 * 13 12 11 41 41 H 1.08994 * 109.47226 * 300.00457 * 16 14 13 42 42 H 1.09003 * 109.46758 * 60.00342 * 16 14 13 43 43 H 0.96999 * 119.99673 * 180.02562 * 21 20 18 44 44 H 1.08999 * 113.61550 * 254.52901 * 26 9 8 45 45 H 1.08998 * 113.61363 * 25.34796 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5430 0.6948 -0.0006 5 8 3.5734 -0.6446 -0.0003 6 6 2.2997 -1.0844 -0.0005 7 6 1.8493 -2.5225 -0.0003 8 7 1.7026 -2.9900 -1.3852 9 6 1.2632 -4.3911 -1.4242 10 6 2.3752 -5.3745 -1.8256 11 6 1.3105 -6.1145 -2.6557 12 6 0.5662 -7.1961 -1.8702 13 7 1.3064 -8.4575 -1.9545 14 6 0.8364 -9.5575 -1.3336 15 8 -0.1991 -9.5029 -0.7045 16 6 1.5975 -10.8552 -1.4208 17 16 0.7178 -12.1343 -0.4901 18 6 1.7973 -13.5017 -0.7542 19 1 2.6910 -13.3775 -1.3479 20 6 1.4997 -14.7383 -0.1984 21 7 2.3064 -15.7596 -0.3953 22 14 -0.0455 -14.9530 0.8290 23 1 -1.1728 -15.3547 -0.0504 24 1 0.1827 -16.0043 1.8526 25 1 -0.3751 -13.6706 1.5014 26 6 0.5536 -4.7781 -2.7325 27 1 -0.3634 0.0004 -1.0277 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3634 0.8898 0.5142 30 1 4.4065 1.3435 -0.0011 31 1 2.5901 -3.1352 0.5134 32 1 0.8914 -2.6032 0.5137 33 1 1.0691 -2.3981 -1.9014 34 1 0.7193 -4.6893 -0.5279 35 1 3.1620 -4.9215 -2.4289 36 1 2.7635 -5.9588 -0.9913 37 1 1.6735 -6.4668 -3.6212 38 1 0.4815 -6.8936 -0.8264 39 1 -0.4300 -7.3305 -2.2915 40 1 2.1347 -8.5010 -2.4573 41 1 1.6815 -11.1577 -2.4646 42 1 2.5941 -10.7209 -1.0001 43 1 2.0982 -16.6239 -0.0072 44 1 -0.5265 -4.8814 -2.6294 45 1 0.8403 -4.1607 -3.5838 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316813912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:50 Heat of formation + Delta-G solvation = -27.096638 kcal Electronic energy + Delta-G solvation = -25364.618714 eV Core-core repulsion = 21509.286801 eV Total energy + Delta-G solvation = -3855.331913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.30877 -41.01314 -39.98802 -36.59622 -36.05594 -35.04459 -34.66688 -32.39464 -31.26243 -29.18536 -27.93857 -27.49591 -26.67067 -25.78394 -23.45563 -23.16282 -21.81229 -21.71365 -20.17638 -19.53223 -18.13205 -17.87429 -17.75718 -17.46197 -17.12858 -16.93421 -16.59843 -16.21939 -16.07553 -15.63083 -15.36459 -15.00423 -14.91683 -14.68342 -14.53942 -14.21766 -14.11535 -13.78897 -13.51399 -13.34150 -13.18142 -13.14336 -13.00904 -12.96126 -12.73712 -12.49932 -12.02235 -11.94368 -11.83606 -11.50445 -11.41630 -11.19041 -11.16750 -10.96267 -10.53318 -10.10618 -9.76149 -9.45054 -8.99160 -8.51288 -6.22113 0.44714 0.99898 1.31725 1.47246 1.56773 1.57934 1.65883 1.84740 2.23425 2.27756 2.72418 2.87042 3.20594 3.31880 3.53105 3.68817 3.71849 3.79760 3.86479 3.93850 3.96943 4.09846 4.24033 4.34161 4.39177 4.48397 4.51619 4.65237 4.72729 4.74441 4.79059 4.83237 4.94530 5.00156 5.03469 5.14795 5.15046 5.25587 5.34200 5.41435 5.49248 5.70906 5.98872 6.11648 6.32105 6.49198 6.73260 6.93951 7.21048 8.61078 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025798 B = 0.001554 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.083000 B =18012.494479 C =18083.882916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.024 4.024 3 N -0.525 5.525 4 C 0.180 3.820 5 O -0.211 6.211 6 C -0.052 4.052 7 C 0.145 3.855 8 N -0.676 5.676 9 C 0.058 3.942 10 C -0.120 4.120 11 C -0.116 4.116 12 C 0.138 3.862 13 N -0.710 5.710 14 C 0.534 3.466 15 O -0.565 6.565 16 C -0.112 4.112 17 S -0.176 6.176 18 C -0.530 4.530 19 H 0.062 0.938 20 C 0.046 3.954 21 N -0.917 5.917 22 Si 0.915 3.085 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.237 1.237 26 C -0.119 4.119 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.289 0.711 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.350 0.650 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.417 0.583 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.277 0.723 44 H 0.078 0.922 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.090 34.820 -3.937 35.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.143 4.143 3 N -0.254 5.254 4 C -0.046 4.046 5 O -0.097 6.097 6 C -0.105 4.105 7 C 0.016 3.984 8 N -0.309 5.309 9 C -0.051 4.051 10 C -0.158 4.158 11 C -0.135 4.135 12 C 0.015 3.985 13 N -0.363 5.363 14 C 0.320 3.680 15 O -0.444 6.444 16 C -0.263 4.263 17 S 0.050 5.950 18 C -0.678 4.678 19 H 0.080 0.920 20 C -0.160 4.160 21 N -0.555 5.555 22 Si 0.737 3.263 23 H -0.187 1.187 24 H -0.184 1.184 25 H -0.161 1.161 26 C -0.158 4.158 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.304 0.696 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.170 0.830 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.118 0.882 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.254 0.746 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.244 35.189 -2.940 35.334 hybrid contribution 0.886 -1.188 -0.245 1.502 sum -0.358 34.001 -3.185 34.152 Atomic orbital electron populations 1.20238 0.85093 1.03970 1.03754 1.21972 0.99098 0.87586 1.05679 1.70382 1.02636 1.32580 1.19840 1.28995 0.98194 0.79215 0.98185 1.84466 1.30508 1.25298 1.69442 1.23277 0.80801 0.97989 1.08414 1.20332 1.00954 0.85488 0.91643 1.60607 1.55056 1.03297 1.11916 1.23140 0.96642 0.87160 0.98203 1.23129 0.96766 0.96409 0.99541 1.22336 0.97683 0.93636 0.99840 1.21220 0.95136 0.81888 1.00250 1.45732 1.28132 1.08828 1.53655 1.19932 0.84679 0.85074 0.78343 1.90686 1.25360 1.85465 1.42839 1.23280 1.03140 0.94429 1.05456 1.84696 1.36130 1.05190 1.68967 1.22475 1.10793 0.96252 1.38245 0.91975 1.25565 0.99671 0.94420 0.96306 1.70017 1.38591 1.01939 1.44927 0.85863 0.79765 0.80664 0.80049 1.18675 1.18361 1.16061 1.23133 0.99883 0.95140 0.97596 0.89618 0.89368 0.90836 0.69622 0.89525 0.89967 0.82996 0.90502 0.88951 0.92237 0.88167 0.92205 0.91844 0.74645 0.86832 0.86885 0.91382 0.90321 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.22 71.23 0.73 0.01 16 2 C -0.02 -0.37 7.11 41.26 0.29 -0.08 16 3 N -0.52 -9.28 11.29 -304.07 -3.43 -12.71 16 4 C 0.18 2.25 13.23 130.48 1.73 3.98 16 5 O -0.21 -3.44 10.78 -3.79 -0.04 -3.48 16 6 C -0.05 -0.78 6.90 24.79 0.17 -0.61 16 7 C 0.14 1.65 5.87 85.56 0.50 2.15 16 8 N -0.68 -7.23 6.54 -492.85 -3.22 -10.45 16 9 C 0.06 0.60 3.77 45.44 0.17 0.77 16 10 C -0.12 -1.44 7.42 31.18 0.23 -1.21 16 11 C -0.12 -1.30 3.95 -10.21 -0.04 -1.34 16 12 C 0.14 2.50 5.35 86.38 0.46 2.96 16 13 N -0.71 -15.46 5.56 -463.07 -2.57 -18.04 16 14 C 0.53 17.70 7.85 87.66 0.69 18.38 16 15 O -0.56 -23.54 15.86 -3.03 -0.05 -23.59 16 16 C -0.11 -4.12 6.16 71.24 0.44 -3.69 16 17 S -0.18 -8.84 18.55 -56.49 -1.05 -9.89 16 18 C -0.53 -30.75 10.04 67.95 0.68 -30.07 16 19 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 20 C 0.05 2.68 5.50 84.86 0.47 3.15 16 21 N -0.92 -55.67 13.97 21.65 0.30 -55.37 16 22 Si 0.91 44.81 27.74 68.60 1.90 46.72 16 23 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 25 H -0.24 -11.57 6.74 99.48 0.67 -10.90 16 26 C -0.12 -1.03 7.26 31.12 0.23 -0.80 16 27 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.09 0.57 7.16 -2.38 -0.02 0.55 16 29 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.29 0.49 8.06 -2.91 -0.02 0.47 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 0.67 7.15 -2.39 -0.02 0.65 16 33 H 0.35 3.12 8.55 -89.69 -0.77 2.35 16 34 H 0.08 0.85 7.46 -2.39 -0.02 0.83 16 35 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.06 0.85 8.10 -2.39 -0.02 0.83 16 37 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.06 1.21 7.39 -2.38 -0.02 1.19 16 39 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.42 6.53 8.47 -92.71 -0.79 5.75 16 41 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 42 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 43 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 44 H 0.08 0.65 8.10 -2.39 -0.02 0.63 16 45 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -79.23 391.92 -1.98 -81.22 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -0.57 Total: 11.98 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 6.75 Total: -6.39 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -8.93 Total: -96.57 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.09 Total: -27.07 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.90 Total: 46.72 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.05 Total: -9.89 kcal Total: -79.23 -1.98 -81.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316813912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.119 kcal (2) G-P(sol) polarization free energy of solvation -79.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds