Wall clock time and date at job start Tue Mar 31 2020 22:12:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.41379 * 126.80276 * 2 1
4 4 C 1.35453 * 103.98577 * 180.02562 * 3 2 1
5 5 C 1.50702 * 126.77415 * 180.26052 * 4 3 2
6 6 N 1.46898 * 109.47068 * 89.71116 * 5 4 3
7 7 C 1.47850 * 111.00138 * 295.80249 * 6 5 4
8 8 C 1.54893 * 104.79807 * 213.63665 * 7 6 5
9 9 C 1.55138 * 101.65606 * 37.06957 * 8 7 6
10 10 C 1.47444 * 111.00248 * 174.96407 * 6 5 4
11 11 H 1.09001 * 109.88803 * 242.66349 * 10 6 5
12 12 C 1.53003 * 109.88710 * 3.84966 * 10 6 5
13 13 N 1.46493 * 109.47341 * 183.04595 * 12 10 6
14 14 C 1.34779 * 120.00176 * 185.24612 * 13 12 10
15 15 O 1.21277 * 119.99916 * 359.97438 * 14 13 12
16 16 C 1.50700 * 119.99941 * 179.97438 * 14 13 12
17 17 S 1.80998 * 109.47258 * 180.02562 * 16 14 13
18 18 C 1.76195 * 100.00275 * 180.02562 * 17 16 14
19 19 H 1.07994 * 120.00051 * 359.97438 * 18 17 16
20 20 C 1.38800 * 119.99861 * 180.02562 * 18 17 16
21 21 N 1.31625 * 120.00290 * 359.97438 * 20 18 17
22 22 Si 1.86802 * 119.99806 * 179.97438 * 20 18 17
23 23 H 1.48500 * 109.47191 * 60.00045 * 22 20 18
24 24 H 1.48498 * 109.47031 * 179.97438 * 22 20 18
25 25 H 1.48506 * 109.47300 * 299.99911 * 22 20 18
26 26 O 1.34035 * 106.44476 * 359.97438 * 4 3 2
27 27 N 1.20917 * 111.57030 * 359.97438 * 26 4 3
28 28 H 1.08998 * 109.47443 * 270.00535 * 1 2 3
29 29 H 1.09005 * 109.46742 * 30.00135 * 1 2 3
30 30 H 1.09001 * 109.47199 * 149.99913 * 1 2 3
31 31 H 1.08002 * 128.00818 * 0.05205 * 3 2 1
32 32 H 1.09001 * 109.47286 * 209.70997 * 5 4 3
33 33 H 1.08997 * 109.47380 * 329.70765 * 5 4 3
34 34 H 1.09005 * 110.36853 * 332.46864 * 7 6 5
35 35 H 1.09002 * 110.36990 * 94.80719 * 7 6 5
36 36 H 1.09001 * 110.99738 * 278.97646 * 8 7 6
37 37 H 1.09005 * 110.99286 * 155.16092 * 8 7 6
38 38 H 1.09001 * 110.71286 * 205.96109 * 9 8 7
39 39 H 1.09007 * 110.70548 * 82.72458 * 9 8 7
40 40 H 1.09005 * 109.47219 * 303.04324 * 12 10 6
41 41 H 1.09004 * 109.47156 * 63.03957 * 12 10 6
42 42 H 0.97006 * 120.00237 * 5.24085 * 13 12 10
43 43 H 1.08994 * 109.47569 * 300.00298 * 16 14 13
44 44 H 1.09008 * 109.46805 * 60.00469 * 16 14 13
45 45 H 0.97007 * 120.00320 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3539 1.1320 0.0000
4 6 3.6025 0.6068 -0.0006
5 6 4.9022 1.3695 0.0046
6 7 5.3190 1.6172 1.3913
7 6 4.3510 2.4916 2.0874
8 6 5.2098 3.3355 3.0618
9 6 6.4915 3.5766 2.2216
10 6 6.6468 2.2565 1.4378
11 1 7.3551 1.6036 1.9479
12 6 7.1337 2.5489 0.0171
13 7 8.4831 3.1167 0.0705
14 6 9.0761 3.5524 -1.0587
15 8 8.4928 3.4739 -2.1191
16 6 10.4640 4.1371 -1.0036
17 16 10.9790 4.6265 -2.6683
18 6 12.5867 5.2567 -2.3184
19 1 12.9596 5.2524 -1.3049
20 6 13.3736 5.7596 -3.3452
21 7 12.9190 5.7654 -4.5805
22 14 15.0779 6.4284 -2.9741
23 1 15.9116 5.3548 -2.3761
24 1 15.7088 6.9015 -4.2324
25 1 14.9684 7.5601 -2.0188
26 8 3.4537 -0.7253 -0.0003
27 7 2.2868 -1.0423 0.0009
28 1 -0.3634 0.0001 1.0276
29 1 -0.3633 0.8900 -0.5139
30 1 -0.3634 -0.8900 -0.5138
31 1 2.0710 2.1743 0.0008
32 1 5.6681 0.7860 -0.5062
33 1 4.7671 2.3210 -0.5097
34 1 3.8418 3.1383 1.3728
35 1 3.6279 1.8922 2.6406
36 1 5.4370 2.7744 3.9683
37 1 4.7168 4.2777 3.3011
38 1 7.3517 3.7434 2.8699
39 1 6.3531 4.4157 1.5397
40 1 7.1516 1.6234 -0.5586
41 1 6.4588 3.2600 -0.4592
42 1 8.9498 3.1793 0.9186
43 1 10.4646 5.0107 -0.3519
44 1 11.1569 3.3918 -0.6129
45 1 13.4688 6.1172 -5.2981
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001317495195.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:12:52
Heat of formation + Delta-G solvation = 32.499337 kcal
Electronic energy + Delta-G solvation = -26326.179717 eV
Core-core repulsion = 22473.432080 eV
Total energy + Delta-G solvation = -3852.747638 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-45.16438 -40.34186 -38.83106 -35.09774 -34.63321 -33.98813 -32.44863 -31.35202
-30.51897 -29.01010 -28.71245 -26.37594 -25.58604 -24.96734 -23.33096 -21.93405
-20.82129 -20.38746 -19.83767 -17.96862 -17.83063 -17.50394 -16.80325 -16.46349
-16.01909 -15.46719 -15.34498 -14.91900 -14.81904 -14.70908 -14.15699 -14.01287
-13.74494 -13.65280 -13.39967 -13.21000 -13.16484 -13.02408 -12.68298 -12.55581
-12.07386 -11.96790 -11.85451 -11.56996 -11.37309 -11.21276 -11.09460 -11.06625
-11.05254 -10.78909 -10.28641 -9.85239 -9.75641 -9.50153 -9.08705 -8.98739
-8.80562 -8.26946 -6.52653 -6.23468 -3.94469 1.15110 1.92127 2.76954
2.93740 3.03194 3.22126 3.24818 3.27941 3.47765 3.76424 3.89470
4.07940 4.12613 4.18670 4.26398 4.38774 4.67881 4.71194 4.77274
4.84126 4.97518 5.01562 5.08564 5.08892 5.11666 5.14908 5.16242
5.18825 5.39421 5.42079 5.46260 5.48055 5.53345 5.58192 5.65038
5.72504 5.79084 5.85254 5.89590 6.10285 6.34789 6.42588 6.56048
7.57201 7.61695 8.01991 8.32992 8.53917 9.21736 10.83851
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.022663 B = 0.001921 C = 0.001819
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1235.205204 B =14569.081688 C =15391.005190
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C 0.013 3.987
3 C -0.230 4.230
4 C -0.010 4.010
5 C 0.114 3.886
6 N -0.513 5.513
7 C 0.039 3.961
8 C -0.128 4.128
9 C -0.140 4.140
10 C 0.064 3.936
11 H 0.100 0.900
12 C 0.101 3.899
13 N -0.735 5.735
14 C 0.533 3.467
15 O -0.517 6.517
16 C -0.153 4.153
17 S -0.060 6.060
18 C -0.537 4.537
19 H 0.072 0.928
20 C 0.074 3.926
21 N -0.868 5.868
22 Si 0.919 3.081
23 H -0.274 1.274
24 H -0.283 1.283
25 H -0.274 1.274
26 O 0.108 5.892
27 N -0.366 5.366
28 H 0.079 0.921
29 H 0.081 0.919
30 H 0.075 0.925
31 H 0.168 0.832
32 H 0.110 0.890
33 H 0.080 0.920
34 H 0.051 0.949
35 H 0.081 0.919
36 H 0.077 0.923
37 H 0.076 0.924
38 H 0.080 0.920
39 H 0.075 0.925
40 H 0.073 0.927
41 H 0.069 0.931
42 H 0.399 0.601
43 H 0.090 0.910
44 H 0.090 0.910
45 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.575 -7.121 16.707 28.202
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.145 4.145
3 C -0.252 4.252
4 C -0.074 4.074
5 C -0.014 4.014
6 N -0.238 5.238
7 C -0.089 4.089
8 C -0.166 4.166
9 C -0.178 4.178
10 C -0.044 4.044
11 H 0.118 0.882
12 C -0.024 4.024
13 N -0.391 5.391
14 C 0.319 3.681
15 O -0.391 6.391
16 C -0.304 4.304
17 S 0.167 5.833
18 C -0.685 4.685
19 H 0.090 0.910
20 C -0.136 4.136
21 N -0.503 5.503
22 Si 0.745 3.255
23 H -0.199 1.199
24 H -0.208 1.208
25 H -0.199 1.199
26 O 0.042 5.958
27 N -0.071 5.071
28 H 0.098 0.902
29 H 0.100 0.900
30 H 0.094 0.906
31 H 0.186 0.814
32 H 0.128 0.872
33 H 0.098 0.902
34 H 0.069 0.931
35 H 0.100 0.900
36 H 0.096 0.904
37 H 0.095 0.905
38 H 0.099 0.901
39 H 0.094 0.906
40 H 0.092 0.908
41 H 0.088 0.912
42 H 0.233 0.767
43 H 0.108 0.892
44 H 0.109 0.891
45 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -22.735 -9.031 14.964 28.677
hybrid contribution 1.824 2.165 1.435 3.174
sum -20.911 -6.866 16.399 27.447
Atomic orbital electron populations
1.20156 0.86009 1.03785 1.03305 1.23581 0.99019 0.88841 1.03097
1.22416 0.91240 1.01044 1.10539 1.24268 0.97641 0.83852 1.01675
1.20903 0.90962 0.98167 0.91380 1.63804 1.01873 1.44969 1.13121
1.23167 0.95103 0.94128 0.96468 1.22692 0.95612 0.99962 0.98384
1.22923 0.98873 0.97050 0.98988 1.22703 0.91178 0.95293 0.95189
0.88222 1.21995 0.84774 0.99230 0.96417 1.45894 1.16951 1.65542
1.10683 1.20326 0.87621 0.76950 0.83228 1.90705 1.65147 1.54101
1.29149 1.23528 0.95114 1.03303 1.08461 1.85400 1.18476 1.79352
1.00108 1.22822 1.01360 1.47470 0.96842 0.90953 1.24991 0.98849
0.95285 0.94429 1.70004 1.37391 1.43335 0.99537 0.86224 0.82246
0.79208 0.77818 1.19921 1.20803 1.19945 1.84838 1.21404 1.22685
1.66918 1.73867 0.89395 1.24184 1.19632 0.90243 0.90036 0.90574
0.81406 0.87193 0.90175 0.93072 0.90043 0.90429 0.90506 0.90085
0.90617 0.90847 0.91236 0.76692 0.89211 0.89132 0.92106
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.45 10.47 36.00 0.38 -0.07 16
2 C 0.01 0.12 7.33 -82.10 -0.60 -0.48 16
3 C -0.23 -1.91 10.40 -39.38 -0.41 -2.32 16
4 C -0.01 -0.09 6.49 -35.30 -0.23 -0.32 16
5 C 0.11 0.94 4.24 -4.98 -0.02 0.91 16
6 N -0.51 -4.06 5.19 -224.78 -1.17 -5.23 16
7 C 0.04 0.26 5.62 -2.30 -0.01 0.25 16
8 C -0.13 -0.75 7.08 -24.60 -0.17 -0.93 16
9 C -0.14 -0.92 6.13 -24.91 -0.15 -1.07 16
10 C 0.06 0.49 3.50 -66.73 -0.23 0.25 16
11 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16
12 C 0.10 1.02 3.75 -4.04 -0.02 1.01 16
13 N -0.74 -8.74 5.34 -60.29 -0.32 -9.07 16
14 C 0.53 9.36 7.85 -10.98 -0.09 9.27 16
15 O -0.52 -11.23 15.86 5.56 0.09 -11.15 16
16 C -0.15 -2.97 6.16 36.01 0.22 -2.74 16
17 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16
18 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16
19 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16
20 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16
21 N -0.87 -25.93 13.22 55.49 0.73 -25.19 16
22 Si 0.92 21.16 29.55 -169.99 -5.02 16.13 16
23 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16
24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16
26 O 0.11 1.26 11.20 17.19 0.19 1.45 16
27 N -0.37 -4.37 12.07 33.42 0.40 -3.97 16
28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
29 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16
30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16
31 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16
32 H 0.11 0.92 6.31 -51.93 -0.33 0.59 16
33 H 0.08 0.61 6.77 -51.93 -0.35 0.26 16
34 H 0.05 0.32 7.57 -51.93 -0.39 -0.07 16
35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16
36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16
37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16
39 H 0.08 0.57 7.80 -51.93 -0.40 0.17 16
40 H 0.07 0.80 6.25 -51.93 -0.32 0.47 16
41 H 0.07 0.77 6.96 -51.93 -0.36 0.41 16
42 H 0.40 3.59 8.36 -40.82 -0.34 3.24 16
43 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16
44 H 0.09 1.62 8.14 -51.91 -0.42 1.19 16
45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16
LS Contribution 383.93 15.07 5.79 5.79
Total: -1.00 -35.15 383.93 -9.36 -44.50
By element:
Atomic # 1 Polarization: 6.27 SS G_CDS: -6.70 Total: -0.43 kcal
Atomic # 6 Polarization: -7.89 SS G_CDS: -1.14 Total: -9.03 kcal
Atomic # 7 Polarization: -43.10 SS G_CDS: -0.35 Total: -43.46 kcal
Atomic # 8 Polarization: -9.98 SS G_CDS: 0.28 Total: -9.69 kcal
Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal
Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal
Total LS contribution 5.79 Total: 5.79 kcal
Total: -35.15 -9.36 -44.50 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001317495195.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.004 kcal
(2) G-P(sol) polarization free energy of solvation -35.146 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.858 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.504 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.499 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds