Wall clock time and date at job start Tue Mar 31 2020 22:12:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.41379 * 126.80276 * 2 1
4 4 C 1.35453 * 103.98577 * 180.02562 * 3 2 1
5 5 C 1.50702 * 126.77415 * 180.26052 * 4 3 2
6 6 N 1.46898 * 109.47068 * 89.71116 * 5 4 3
7 7 C 1.47850 * 111.00138 * 295.80249 * 6 5 4
8 8 C 1.54893 * 104.79807 * 213.63665 * 7 6 5
9 9 C 1.55138 * 101.65606 * 37.06957 * 8 7 6
10 10 C 1.47444 * 111.00248 * 174.96407 * 6 5 4
11 11 H 1.09001 * 109.88803 * 242.66349 * 10 6 5
12 12 C 1.53003 * 109.88710 * 3.84966 * 10 6 5
13 13 N 1.46493 * 109.47341 * 183.04595 * 12 10 6
14 14 C 1.34779 * 120.00176 * 185.24612 * 13 12 10
15 15 O 1.21277 * 119.99916 * 359.97438 * 14 13 12
16 16 C 1.50700 * 119.99941 * 179.97438 * 14 13 12
17 17 S 1.80998 * 109.47258 * 180.02562 * 16 14 13
18 18 C 1.76195 * 100.00275 * 180.02562 * 17 16 14
19 19 H 1.07994 * 120.00051 * 359.97438 * 18 17 16
20 20 C 1.38800 * 119.99861 * 180.02562 * 18 17 16
21 21 N 1.31625 * 120.00290 * 359.97438 * 20 18 17
22 22 Si 1.86802 * 119.99806 * 179.97438 * 20 18 17
23 23 H 1.48500 * 109.47191 * 60.00045 * 22 20 18
24 24 H 1.48498 * 109.47031 * 179.97438 * 22 20 18
25 25 H 1.48506 * 109.47300 * 299.99911 * 22 20 18
26 26 O 1.34035 * 106.44476 * 359.97438 * 4 3 2
27 27 N 1.20917 * 111.57030 * 359.97438 * 26 4 3
28 28 H 1.08998 * 109.47443 * 270.00535 * 1 2 3
29 29 H 1.09005 * 109.46742 * 30.00135 * 1 2 3
30 30 H 1.09001 * 109.47199 * 149.99913 * 1 2 3
31 31 H 1.08002 * 128.00818 * 0.05205 * 3 2 1
32 32 H 1.09001 * 109.47286 * 209.70997 * 5 4 3
33 33 H 1.08997 * 109.47380 * 329.70765 * 5 4 3
34 34 H 1.09005 * 110.36853 * 332.46864 * 7 6 5
35 35 H 1.09002 * 110.36990 * 94.80719 * 7 6 5
36 36 H 1.09001 * 110.99738 * 278.97646 * 8 7 6
37 37 H 1.09005 * 110.99286 * 155.16092 * 8 7 6
38 38 H 1.09001 * 110.71286 * 205.96109 * 9 8 7
39 39 H 1.09007 * 110.70548 * 82.72458 * 9 8 7
40 40 H 1.09005 * 109.47219 * 303.04324 * 12 10 6
41 41 H 1.09004 * 109.47156 * 63.03957 * 12 10 6
42 42 H 0.97006 * 120.00237 * 5.24085 * 13 12 10
43 43 H 1.08994 * 109.47569 * 300.00298 * 16 14 13
44 44 H 1.09008 * 109.46805 * 60.00469 * 16 14 13
45 45 H 0.97007 * 120.00320 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3539 1.1320 0.0000
4 6 3.6025 0.6068 -0.0006
5 6 4.9022 1.3695 0.0046
6 7 5.3190 1.6172 1.3913
7 6 4.3510 2.4916 2.0874
8 6 5.2098 3.3355 3.0618
9 6 6.4915 3.5766 2.2216
10 6 6.6468 2.2565 1.4378
11 1 7.3551 1.6036 1.9479
12 6 7.1337 2.5489 0.0171
13 7 8.4831 3.1167 0.0705
14 6 9.0761 3.5524 -1.0587
15 8 8.4928 3.4739 -2.1191
16 6 10.4640 4.1371 -1.0036
17 16 10.9790 4.6265 -2.6683
18 6 12.5867 5.2567 -2.3184
19 1 12.9596 5.2524 -1.3049
20 6 13.3736 5.7596 -3.3452
21 7 12.9190 5.7654 -4.5805
22 14 15.0779 6.4284 -2.9741
23 1 15.9116 5.3548 -2.3761
24 1 15.7088 6.9015 -4.2324
25 1 14.9684 7.5601 -2.0188
26 8 3.4537 -0.7253 -0.0003
27 7 2.2868 -1.0423 0.0009
28 1 -0.3634 0.0001 1.0276
29 1 -0.3633 0.8900 -0.5139
30 1 -0.3634 -0.8900 -0.5138
31 1 2.0710 2.1743 0.0008
32 1 5.6681 0.7860 -0.5062
33 1 4.7671 2.3210 -0.5097
34 1 3.8418 3.1383 1.3728
35 1 3.6279 1.8922 2.6406
36 1 5.4370 2.7744 3.9683
37 1 4.7168 4.2777 3.3011
38 1 7.3517 3.7434 2.8699
39 1 6.3531 4.4157 1.5397
40 1 7.1516 1.6234 -0.5586
41 1 6.4588 3.2600 -0.4592
42 1 8.9498 3.1793 0.9186
43 1 10.4646 5.0107 -0.3519
44 1 11.1569 3.3918 -0.6129
45 1 13.4688 6.1172 -5.2981
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001317495195.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:12:51
Heat of formation + Delta-G solvation = 7.117231 kcal
Electronic energy + Delta-G solvation = -26327.280368 eV
Core-core repulsion = 22473.432080 eV
Total energy + Delta-G solvation = -3853.848288 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-45.90736 -41.17319 -40.01931 -35.87598 -35.64936 -34.64945 -34.56975 -32.20202
-31.47437 -29.87699 -29.54779 -27.66556 -27.01044 -25.87225 -24.04338 -22.56882
-21.66584 -21.44257 -20.57296 -19.76704 -18.66800 -18.32754 -17.86378 -17.46858
-16.89756 -16.86460 -16.52373 -16.40875 -15.87924 -15.54111 -15.33782 -14.97077
-14.69658 -14.54939 -14.24726 -14.18420 -14.03151 -13.77057 -13.61942 -13.52294
-13.20239 -13.15553 -12.85521 -12.63368 -12.61215 -12.56540 -12.07284 -12.02371
-11.94478 -11.73392 -11.59927 -11.11707 -10.99761 -10.95906 -10.48238 -10.26180
-10.11584 -9.44761 -8.65122 -8.33357 -6.11229 0.42272 1.24414 1.28192
1.44840 1.48009 1.57442 1.62474 2.08143 2.22620 2.29567 2.93970
3.00821 3.28608 3.34091 3.43222 3.48626 3.72082 3.74194 4.01027
4.01858 4.11501 4.19523 4.22288 4.31939 4.36449 4.41091 4.53178
4.54077 4.56916 4.58322 4.68157 4.73394 4.88803 4.91649 4.92317
5.00643 5.07556 5.15878 5.24667 5.31727 5.40837 5.43094 5.80397
5.84479 6.20832 6.50072 7.08032 7.24929 7.28370 8.75443
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.022663 B = 0.001921 C = 0.001819
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1235.205204 B =14569.081688 C =15391.005190
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C 0.010 3.990
3 C -0.225 4.225
4 C -0.017 4.017
5 C 0.117 3.883
6 N -0.520 5.520
7 C 0.037 3.963
8 C -0.122 4.122
9 C -0.138 4.138
10 C 0.074 3.926
11 H 0.108 0.892
12 C 0.102 3.898
13 N -0.707 5.707
14 C 0.535 3.465
15 O -0.566 6.566
16 C -0.130 4.130
17 S -0.153 6.153
18 C -0.547 4.547
19 H 0.084 0.916
20 C 0.013 3.987
21 N -0.911 5.911
22 Si 0.997 3.003
23 H -0.262 1.262
24 H -0.280 1.280
25 H -0.261 1.261
26 O 0.081 5.919
27 N -0.402 5.402
28 H 0.093 0.907
29 H 0.102 0.898
30 H 0.073 0.927
31 H 0.194 0.806
32 H 0.103 0.897
33 H 0.087 0.913
34 H 0.057 0.943
35 H 0.078 0.922
36 H 0.081 0.919
37 H 0.088 0.912
38 H 0.095 0.905
39 H 0.067 0.933
40 H 0.066 0.934
41 H 0.063 0.937
42 H 0.418 0.582
43 H 0.112 0.888
44 H 0.110 0.890
45 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.595 -6.240 19.410 29.699
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.148 4.148
3 C -0.247 4.247
4 C -0.081 4.081
5 C -0.011 4.011
6 N -0.245 5.245
7 C -0.090 4.090
8 C -0.160 4.160
9 C -0.176 4.176
10 C -0.034 4.034
11 H 0.126 0.874
12 C -0.022 4.022
13 N -0.362 5.362
14 C 0.321 3.679
15 O -0.444 6.444
16 C -0.281 4.281
17 S 0.074 5.926
18 C -0.694 4.694
19 H 0.102 0.898
20 C -0.192 4.192
21 N -0.548 5.548
22 Si 0.819 3.181
23 H -0.187 1.187
24 H -0.205 1.205
25 H -0.186 1.186
26 O 0.019 5.981
27 N -0.110 5.110
28 H 0.111 0.889
29 H 0.121 0.879
30 H 0.092 0.908
31 H 0.211 0.789
32 H 0.121 0.879
33 H 0.104 0.896
34 H 0.075 0.925
35 H 0.096 0.904
36 H 0.099 0.901
37 H 0.107 0.893
38 H 0.114 0.886
39 H 0.086 0.914
40 H 0.085 0.915
41 H 0.081 0.919
42 H 0.255 0.745
43 H 0.130 0.870
44 H 0.128 0.872
45 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -22.746 -8.162 17.739 29.978
hybrid contribution 1.690 1.839 0.681 2.589
sum -21.056 -6.323 18.420 28.682
Atomic orbital electron populations
1.20321 0.83747 1.04748 1.04456 1.24229 1.00551 0.88618 1.01399
1.22750 0.90475 1.01968 1.09513 1.24559 0.98558 0.83344 1.01656
1.20885 0.90408 0.98122 0.91718 1.63830 1.02281 1.45516 1.12848
1.23211 0.94997 0.94104 0.96688 1.22674 0.94970 1.00333 0.98018
1.22925 0.99938 0.95825 0.98949 1.22661 0.91157 0.96197 0.93357
0.87406 1.22109 0.83313 0.98490 0.98308 1.45582 1.17407 1.63361
1.09813 1.20036 0.86975 0.77032 0.83872 1.90697 1.66017 1.56428
1.31231 1.23371 0.96581 1.04740 1.03402 1.85582 1.19475 1.80138
1.07373 1.23179 1.01486 1.47288 0.97481 0.89813 1.26120 1.03546
0.95423 0.94078 1.70176 1.39253 1.44577 1.00775 0.85017 0.76352
0.78858 0.77857 1.18700 1.20534 1.18589 1.84790 1.21616 1.23818
1.67905 1.73865 0.89798 1.25651 1.21722 0.88883 0.87919 0.90763
0.78904 0.87888 0.89561 0.92467 0.90409 0.90078 0.89348 0.88638
0.91434 0.91541 0.91918 0.74503 0.87024 0.87173 0.92038
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.79 10.47 71.24 0.75 -0.04 16
2 C 0.01 0.19 7.33 43.58 0.32 0.51 16
3 C -0.23 -3.47 10.40 22.40 0.23 -3.24 16
4 C -0.02 -0.32 6.49 25.04 0.16 -0.15 16
5 C 0.12 1.86 4.24 85.56 0.36 2.22 16
6 N -0.52 -7.49 5.19 -865.08 -4.49 -11.98 16
7 C 0.04 0.42 5.62 86.77 0.49 0.91 16
8 C -0.12 -1.09 7.08 31.97 0.23 -0.87 16
9 C -0.14 -1.43 6.13 31.77 0.19 -1.23 16
10 C 0.07 0.97 3.50 45.26 0.16 1.13 16
11 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16
12 C 0.10 1.94 3.75 86.38 0.32 2.27 16
13 N -0.71 -15.45 5.34 -463.06 -2.47 -17.92 16
14 C 0.54 18.38 7.85 87.66 0.69 19.07 16
15 O -0.57 -24.98 15.86 -3.02 -0.05 -25.03 16
16 C -0.13 -4.87 6.16 71.24 0.44 -4.43 16
17 S -0.15 -8.31 20.57 -56.49 -1.16 -9.47 16
18 C -0.55 -30.68 9.50 67.95 0.65 -30.03 16
19 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16
20 C 0.01 0.74 5.49 84.86 0.47 1.20 16
21 N -0.91 -55.56 13.22 21.65 0.29 -55.28 16
22 Si 1.00 42.98 29.55 68.60 2.03 45.01 16
23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16
24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16
25 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16
26 O 0.08 1.95 11.20 71.69 0.80 2.75 16
27 N -0.40 -9.74 12.07 -49.56 -0.60 -10.34 16
28 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16
29 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16
30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16
31 H 0.19 1.82 8.06 -2.91 -0.02 1.79 16
32 H 0.10 1.76 6.31 -2.39 -0.02 1.75 16
33 H 0.09 1.25 6.77 -2.39 -0.02 1.24 16
34 H 0.06 0.59 7.57 -2.38 -0.02 0.57 16
35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16
36 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16
37 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16
38 H 0.10 0.74 8.14 -2.39 -0.02 0.73 16
39 H 0.07 0.85 7.80 -2.38 -0.02 0.83 16
40 H 0.07 1.41 6.25 -2.38 -0.01 1.40 16
41 H 0.06 1.33 6.96 -2.39 -0.02 1.31 16
42 H 0.42 6.19 8.36 -92.70 -0.77 5.41 16
43 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16
44 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16
45 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16
Total: -1.00 -79.12 383.93 0.03 -79.08
By element:
Atomic # 1 Polarization: 15.62 SS G_CDS: 0.24 Total: 15.86 kcal
Atomic # 6 Polarization: -18.13 SS G_CDS: 5.45 Total: -12.68 kcal
Atomic # 7 Polarization: -88.25 SS G_CDS: -7.27 Total: -95.52 kcal
Atomic # 8 Polarization: -23.03 SS G_CDS: 0.75 Total: -22.28 kcal
Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal
Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.47 kcal
Total: -79.12 0.03 -79.08 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001317495195.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.201 kcal
(2) G-P(sol) polarization free energy of solvation -79.118 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.083 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.034 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.084 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.117 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds