Wall clock time and date at job start Tue Mar 31 2020 22:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34335 * 126.44843 * 2 1 4 4 N 1.34476 * 107.67026 * 179.97438 * 3 2 1 5 5 C 1.30249 * 108.70248 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.61843 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.47451 * 90.02281 * 6 5 4 8 8 C 1.46895 * 111.00053 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.47019 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.87583 * 64.29620 * 9 8 7 11 11 C 1.54327 * 110.01113 * 185.39754 * 9 8 7 12 12 C 1.55154 * 102.94389 * 141.67967 * 11 9 8 13 13 C 1.54912 * 101.58113 * 324.50075 * 12 11 9 14 14 N 1.47022 * 109.87895 * 303.28093 * 9 8 7 15 15 C 1.34775 * 125.64810 * 61.52501 * 14 9 8 16 16 O 1.21279 * 120.00030 * 0.02562 * 15 14 9 17 17 C 1.50700 * 119.99908 * 179.97438 * 15 14 9 18 18 S 1.80996 * 109.47393 * 180.02562 * 17 15 14 19 19 C 1.76197 * 100.00228 * 180.02562 * 18 17 15 20 20 H 1.08004 * 120.00306 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99993 * 180.02562 * 19 18 17 22 22 N 1.31635 * 120.00267 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00113 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46639 * 90.00468 * 23 21 19 25 25 H 1.48501 * 109.47234 * 210.00239 * 23 21 19 26 26 H 1.48496 * 109.47301 * 330.00415 * 23 21 19 27 27 O 1.33975 * 108.76419 * 0.22419 * 5 4 3 28 28 H 1.09002 * 109.46910 * 89.99972 * 1 2 3 29 29 H 1.08998 * 109.47564 * 209.99897 * 1 2 3 30 30 H 1.09005 * 109.47211 * 330.00452 * 1 2 3 31 31 H 1.07998 * 126.16101 * 359.93955 * 3 2 1 32 32 H 1.08997 * 109.46813 * 330.01805 * 6 5 4 33 33 H 1.09005 * 109.46900 * 210.02017 * 6 5 4 34 34 H 1.00903 * 111.00176 * 56.04217 * 7 6 5 35 35 H 1.08998 * 109.47695 * 59.99683 * 8 7 6 36 36 H 1.09001 * 109.47035 * 299.99471 * 8 7 6 37 37 H 1.08997 * 110.71782 * 260.04711 * 11 9 8 38 38 H 1.09000 * 110.71779 * 23.31091 * 11 9 8 39 39 H 1.08991 * 111.00707 * 206.42190 * 12 11 9 40 40 H 1.08998 * 111.03534 * 82.58209 * 12 11 9 41 41 H 1.09000 * 110.36223 * 278.17104 * 13 12 11 42 42 H 1.08996 * 110.45872 * 155.89758 * 13 12 11 43 43 H 1.09006 * 109.47232 * 300.00248 * 17 15 14 44 44 H 1.09005 * 109.47071 * 60.00022 * 17 15 14 45 45 H 0.96999 * 120.00132 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0006 5 6 3.5765 -0.6548 0.0004 6 6 4.8004 -1.5341 0.0003 7 7 5.1978 -1.8205 1.3852 8 6 6.3907 -2.6768 1.4243 9 6 6.7735 -2.9520 2.8799 10 1 5.9839 -3.5224 3.3692 11 6 8.1009 -3.7370 2.9375 12 6 8.8203 -3.1139 4.1629 13 6 8.3824 -1.6315 4.0599 14 7 6.9861 -1.6821 3.5896 15 6 6.0581 -0.7234 3.7795 16 8 4.9347 -0.8729 3.3476 17 6 6.4159 0.5337 4.5295 18 16 4.9682 1.6165 4.6178 19 6 5.6515 2.9682 5.5181 20 1 6.6844 2.9407 5.8324 21 6 4.8620 4.0679 5.8244 22 7 5.3723 5.0775 6.4975 23 14 3.0752 4.1152 5.2815 24 1 2.2205 3.5193 6.3397 25 1 2.6656 5.5235 5.0491 26 1 2.9192 3.3404 4.0244 27 8 2.3074 -1.0841 -0.0053 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8901 0.5138 31 1 1.9822 2.1112 -0.0009 32 1 5.6148 -1.0230 -0.5131 33 1 4.5763 -2.4687 -0.5140 34 1 4.4368 -2.2362 1.9012 35 1 7.2160 -2.1734 0.9209 36 1 6.1780 -3.6193 0.9197 37 1 7.9144 -4.7987 3.0985 38 1 8.6815 -3.5800 2.0284 39 1 9.9021 -3.2091 4.0709 40 1 8.4684 -3.5614 5.0924 41 1 9.0060 -1.1010 3.3403 42 1 8.4368 -1.1495 5.0359 43 1 6.7383 0.2757 5.5383 44 1 7.2243 1.0488 4.0104 45 1 4.8206 5.8462 6.7112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319049166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:40 Heat of formation + Delta-G solvation = 13.396239 kcal Electronic energy + Delta-G solvation = -27711.783534 eV Core-core repulsion = 23858.207524 eV Total energy + Delta-G solvation = -3853.576010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.07058 -39.94853 -37.05021 -36.03029 -34.44065 -32.56855 -32.34317 -31.70186 -30.57062 -28.63797 -27.72786 -25.51306 -25.24497 -23.79850 -22.28058 -22.09403 -21.25367 -20.71595 -18.87870 -17.61481 -16.98329 -16.85779 -16.58085 -16.20958 -15.58390 -14.93379 -14.79134 -14.65119 -14.40057 -14.11335 -13.96021 -13.73095 -13.54838 -13.19818 -13.09546 -13.02433 -12.78170 -12.74127 -12.48231 -12.30345 -12.11497 -11.76067 -11.54614 -11.40261 -11.21213 -11.14375 -10.98672 -10.94683 -10.91256 -10.45199 -10.17943 -9.76695 -9.07104 -8.91103 -8.56993 -8.48437 -8.32990 -7.90327 -6.75207 -6.19971 -3.88078 1.60472 2.77191 2.87388 2.95984 3.29761 3.37948 3.39015 3.58565 3.74376 4.08907 4.30597 4.38422 4.42208 4.61182 4.68783 4.83881 4.90112 4.99714 5.01550 5.16453 5.19438 5.20895 5.23335 5.31181 5.31939 5.33050 5.46408 5.50975 5.55344 5.55556 5.64769 5.66229 5.71003 5.88631 6.01524 6.02143 6.05807 6.19943 6.20585 6.53039 6.57657 6.96935 7.49788 7.90108 8.02972 8.03494 8.50854 8.85848 9.27235 10.89621 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.006859 B = 0.005551 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4081.301601 B = 5043.174496 C = 8710.350972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.058 4.058 3 C -0.034 4.034 4 N -0.452 5.452 5 C 0.196 3.804 6 C 0.159 3.841 7 N -0.648 5.648 8 C 0.051 3.949 9 C 0.142 3.858 10 H 0.069 0.931 11 C -0.125 4.125 12 C -0.132 4.132 13 C 0.100 3.900 14 N -0.618 5.618 15 C 0.549 3.451 16 O -0.478 6.478 17 C -0.114 4.114 18 S -0.136 6.136 19 C -0.518 4.518 20 H 0.086 0.914 21 C 0.095 3.905 22 N -0.884 5.884 23 Si 0.855 3.145 24 H -0.269 1.269 25 H -0.276 1.276 26 H -0.234 1.234 27 O -0.209 6.209 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.180 0.820 32 H 0.106 0.894 33 H 0.047 0.953 34 H 0.357 0.643 35 H 0.075 0.925 36 H 0.034 0.966 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.137 -19.783 -12.648 23.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 C -0.173 4.173 4 N -0.180 5.180 5 C -0.012 4.012 6 C 0.029 3.971 7 N -0.286 5.286 8 C -0.079 4.079 9 C 0.038 3.962 10 H 0.087 0.913 11 C -0.163 4.163 12 C -0.170 4.170 13 C -0.024 4.024 14 N -0.356 5.356 15 C 0.336 3.664 16 O -0.348 6.348 17 C -0.264 4.264 18 S 0.090 5.910 19 C -0.666 4.666 20 H 0.104 0.896 21 C -0.113 4.113 22 N -0.521 5.521 23 Si 0.680 3.320 24 H -0.194 1.194 25 H -0.201 1.201 26 H -0.158 1.158 27 O -0.096 6.096 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.197 0.803 32 H 0.124 0.876 33 H 0.065 0.935 34 H 0.180 0.820 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.224 -18.838 -13.122 22.959 hybrid contribution -0.277 -0.555 0.295 0.687 sum -0.053 -19.393 -12.827 23.251 Atomic orbital electron populations 1.20210 0.84331 1.04340 1.03195 1.23337 0.94808 0.84718 1.08217 1.23094 0.87957 1.00281 1.05955 1.70430 1.22666 1.09055 1.15833 1.25894 0.83585 0.90476 1.01199 1.20173 0.89168 0.94876 0.92838 1.60933 1.08568 1.49863 1.09198 1.22449 0.94263 0.94722 0.96459 1.21473 0.97384 0.85673 0.91704 0.91252 1.22635 0.95118 0.99414 0.99173 1.22759 1.00612 0.95133 0.98485 1.22259 0.83165 0.96828 1.00128 1.48388 1.11124 1.18502 1.57615 1.19645 0.84328 0.82885 0.79523 1.90594 1.20111 1.77704 1.46384 1.23216 1.04581 0.96541 1.02109 1.84768 1.14412 1.17468 1.74350 1.22372 1.01426 1.03182 1.39604 0.89619 1.24687 0.98689 0.94211 0.93680 1.69947 1.36924 1.07122 1.38114 0.86746 0.84884 0.78516 0.81820 1.19437 1.20102 1.15797 1.84314 1.18091 1.36791 1.70424 0.90266 0.90603 0.89029 0.80299 0.87622 0.93491 0.81970 0.90689 0.94830 0.90239 0.90409 0.89981 0.90623 0.91663 0.90517 0.89430 0.89196 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.62 10.43 36.00 0.38 -0.24 16 2 C -0.06 -0.84 7.39 -35.69 -0.26 -1.11 16 3 C -0.03 -0.56 11.80 -17.77 -0.21 -0.77 16 4 N -0.45 -8.56 11.29 -11.10 -0.13 -8.68 16 5 C 0.20 3.24 7.86 -12.95 -0.10 3.13 16 6 C 0.16 2.07 6.31 -4.97 -0.03 2.04 16 7 N -0.65 -9.21 3.28 -115.06 -0.38 -9.58 16 8 C 0.05 0.54 5.27 -3.82 -0.02 0.52 16 9 C 0.14 1.52 3.28 -66.95 -0.22 1.30 16 10 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.12 -0.89 6.48 -24.90 -0.16 -1.05 16 12 C -0.13 -0.99 7.09 -24.58 -0.17 -1.16 16 13 C 0.10 1.06 6.69 -2.53 -0.02 1.04 16 14 N -0.62 -8.48 3.07 -163.01 -0.50 -8.98 16 15 C 0.55 10.20 7.44 -10.99 -0.08 10.12 16 16 O -0.48 -10.04 12.01 5.56 0.07 -9.97 16 17 C -0.11 -2.37 5.16 36.01 0.19 -2.19 16 18 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 19 C -0.52 -15.51 10.04 30.94 0.31 -15.20 16 20 H 0.09 2.68 8.03 -52.48 -0.42 2.25 16 21 C 0.10 2.88 5.50 -17.43 -0.10 2.79 16 22 N -0.88 -27.45 13.97 55.49 0.78 -26.68 16 23 Si 0.86 22.59 27.74 -169.99 -4.71 17.88 16 24 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.23 -6.25 6.74 56.52 0.38 -5.87 16 27 O -0.21 -3.31 10.78 5.33 0.06 -3.25 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.18 2.55 8.06 -52.49 -0.42 2.13 16 32 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.36 5.52 7.41 -39.29 -0.29 5.23 16 35 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 36 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.49 7.81 -51.93 -0.41 0.08 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.84 7.47 -51.93 -0.39 0.45 16 43 H 0.09 1.73 7.85 -51.91 -0.41 1.32 16 44 H 0.09 1.84 8.14 -51.91 -0.42 1.42 16 45 H 0.27 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 383.09 15.07 5.77 5.77 Total: -1.00 -37.28 383.09 -8.53 -45.80 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.98 Total: 4.07 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -0.50 Total: -0.77 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.23 Total: -53.92 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.12 Total: -13.23 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.71 Total: 17.88 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.28 -8.53 -45.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319049166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.200 kcal (2) G-P(sol) polarization free energy of solvation -37.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds