Wall clock time and date at job start Tue Mar 31 2020 22:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34335 * 126.44843 * 2 1 4 4 N 1.34476 * 107.67026 * 179.97438 * 3 2 1 5 5 C 1.30249 * 108.70248 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.61843 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.47451 * 90.02281 * 6 5 4 8 8 C 1.46895 * 111.00053 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.47019 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.87583 * 64.29620 * 9 8 7 11 11 C 1.54327 * 110.01113 * 185.39754 * 9 8 7 12 12 C 1.55154 * 102.94389 * 141.67967 * 11 9 8 13 13 C 1.54912 * 101.58113 * 324.50075 * 12 11 9 14 14 N 1.47022 * 109.87895 * 303.28093 * 9 8 7 15 15 C 1.34775 * 125.64810 * 61.52501 * 14 9 8 16 16 O 1.21279 * 120.00030 * 0.02562 * 15 14 9 17 17 C 1.50700 * 119.99908 * 179.97438 * 15 14 9 18 18 S 1.80996 * 109.47393 * 180.02562 * 17 15 14 19 19 C 1.76197 * 100.00228 * 180.02562 * 18 17 15 20 20 H 1.08004 * 120.00306 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99993 * 180.02562 * 19 18 17 22 22 N 1.31635 * 120.00267 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00113 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46639 * 90.00468 * 23 21 19 25 25 H 1.48501 * 109.47234 * 210.00239 * 23 21 19 26 26 H 1.48496 * 109.47301 * 330.00415 * 23 21 19 27 27 O 1.33975 * 108.76419 * 0.22419 * 5 4 3 28 28 H 1.09002 * 109.46910 * 89.99972 * 1 2 3 29 29 H 1.08998 * 109.47564 * 209.99897 * 1 2 3 30 30 H 1.09005 * 109.47211 * 330.00452 * 1 2 3 31 31 H 1.07998 * 126.16101 * 359.93955 * 3 2 1 32 32 H 1.08997 * 109.46813 * 330.01805 * 6 5 4 33 33 H 1.09005 * 109.46900 * 210.02017 * 6 5 4 34 34 H 1.00903 * 111.00176 * 56.04217 * 7 6 5 35 35 H 1.08998 * 109.47695 * 59.99683 * 8 7 6 36 36 H 1.09001 * 109.47035 * 299.99471 * 8 7 6 37 37 H 1.08997 * 110.71782 * 260.04711 * 11 9 8 38 38 H 1.09000 * 110.71779 * 23.31091 * 11 9 8 39 39 H 1.08991 * 111.00707 * 206.42190 * 12 11 9 40 40 H 1.08998 * 111.03534 * 82.58209 * 12 11 9 41 41 H 1.09000 * 110.36223 * 278.17104 * 13 12 11 42 42 H 1.08996 * 110.45872 * 155.89758 * 13 12 11 43 43 H 1.09006 * 109.47232 * 300.00248 * 17 15 14 44 44 H 1.09005 * 109.47071 * 60.00022 * 17 15 14 45 45 H 0.96999 * 120.00132 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0006 5 6 3.5765 -0.6548 0.0004 6 6 4.8004 -1.5341 0.0003 7 7 5.1978 -1.8205 1.3852 8 6 6.3907 -2.6768 1.4243 9 6 6.7735 -2.9520 2.8799 10 1 5.9839 -3.5224 3.3692 11 6 8.1009 -3.7370 2.9375 12 6 8.8203 -3.1139 4.1629 13 6 8.3824 -1.6315 4.0599 14 7 6.9861 -1.6821 3.5896 15 6 6.0581 -0.7234 3.7795 16 8 4.9347 -0.8729 3.3476 17 6 6.4159 0.5337 4.5295 18 16 4.9682 1.6165 4.6178 19 6 5.6515 2.9682 5.5181 20 1 6.6844 2.9407 5.8324 21 6 4.8620 4.0679 5.8244 22 7 5.3723 5.0775 6.4975 23 14 3.0752 4.1152 5.2815 24 1 2.2205 3.5193 6.3397 25 1 2.6656 5.5235 5.0491 26 1 2.9192 3.3404 4.0244 27 8 2.3074 -1.0841 -0.0053 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8901 0.5138 31 1 1.9822 2.1112 -0.0009 32 1 5.6148 -1.0230 -0.5131 33 1 4.5763 -2.4687 -0.5140 34 1 4.4368 -2.2362 1.9012 35 1 7.2160 -2.1734 0.9209 36 1 6.1780 -3.6193 0.9197 37 1 7.9144 -4.7987 3.0985 38 1 8.6815 -3.5800 2.0284 39 1 9.9021 -3.2091 4.0709 40 1 8.4684 -3.5614 5.0924 41 1 9.0060 -1.1010 3.3403 42 1 8.4368 -1.1495 5.0359 43 1 6.7383 0.2757 5.5383 44 1 7.2243 1.0488 4.0104 45 1 4.8206 5.8462 6.7112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319049166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:39 Heat of formation + Delta-G solvation = -14.349444 kcal Electronic energy + Delta-G solvation = -27712.986677 eV Core-core repulsion = 23858.207524 eV Total energy + Delta-G solvation = -3854.779153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.25474 -41.04088 -38.27292 -36.99837 -35.67119 -34.68049 -33.57115 -32.80762 -31.43853 -30.11669 -28.65679 -27.85012 -26.20855 -24.78234 -23.32093 -23.23855 -22.09283 -21.79866 -20.26048 -19.43286 -18.29751 -17.95208 -17.74330 -17.33022 -17.10974 -16.66550 -16.17407 -15.80889 -15.64426 -15.41964 -15.15959 -14.95056 -14.87320 -14.48300 -14.13911 -14.01750 -13.89815 -13.82149 -13.52650 -13.31959 -13.23172 -13.17184 -13.09711 -12.95113 -12.59255 -12.46404 -12.31254 -12.04986 -11.91014 -11.86587 -11.54819 -11.42898 -11.18172 -10.51178 -10.48005 -9.65033 -9.59777 -8.96165 -8.90917 -8.52702 -6.20410 0.45656 1.00075 1.26913 1.45429 1.55891 1.67970 1.75026 1.90581 2.22974 2.27644 2.73621 2.85396 3.10372 3.35561 3.61858 3.78297 3.85792 3.96343 4.06302 4.08843 4.14502 4.22314 4.31517 4.35594 4.38369 4.45170 4.52983 4.58153 4.64702 4.65467 4.73052 4.77417 4.88967 5.02898 5.04877 5.14134 5.17691 5.19408 5.36046 5.41812 5.59048 5.69769 6.06925 6.09193 6.44864 6.65980 6.82959 6.92976 7.47510 8.60352 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.006859 B = 0.005551 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4081.301601 B = 5043.174496 C = 8710.350972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.050 4.050 3 C -0.072 4.072 4 N -0.499 5.499 5 C 0.187 3.813 6 C 0.163 3.837 7 N -0.674 5.674 8 C 0.054 3.946 9 C 0.135 3.865 10 H 0.062 0.938 11 C -0.112 4.112 12 C -0.121 4.121 13 C 0.087 3.913 14 N -0.611 5.611 15 C 0.548 3.452 16 O -0.507 6.507 17 C -0.101 4.101 18 S -0.165 6.165 19 C -0.530 4.530 20 H 0.056 0.944 21 C 0.047 3.953 22 N -0.918 5.918 23 Si 0.916 3.084 24 H -0.260 1.260 25 H -0.257 1.257 26 H -0.243 1.243 27 O -0.214 6.214 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.190 0.810 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.347 0.653 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.123 -22.496 -13.738 26.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 C -0.210 4.210 4 N -0.228 5.228 5 C -0.021 4.021 6 C 0.034 3.966 7 N -0.310 5.310 8 C -0.075 4.075 9 C 0.032 3.968 10 H 0.081 0.919 11 C -0.150 4.150 12 C -0.159 4.159 13 C -0.035 4.035 14 N -0.348 5.348 15 C 0.334 3.666 16 O -0.381 6.381 17 C -0.252 4.252 18 S 0.062 5.938 19 C -0.677 4.677 20 H 0.075 0.925 21 C -0.158 4.158 22 N -0.557 5.557 23 Si 0.738 3.262 24 H -0.185 1.185 25 H -0.181 1.181 26 H -0.167 1.167 27 O -0.102 6.102 28 H 0.124 0.876 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.207 0.793 32 H 0.125 0.875 33 H 0.097 0.903 34 H 0.169 0.831 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.121 0.879 38 H 0.112 0.888 39 H 0.126 0.874 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.114 0.886 44 H 0.109 0.891 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.263 -21.576 -14.213 25.838 hybrid contribution -0.141 0.211 0.644 0.692 sum 0.122 -21.365 -13.569 25.310 Atomic orbital electron populations 1.20462 0.80789 1.05401 1.05229 1.24186 0.96630 0.83794 1.05656 1.23434 0.87921 1.01603 1.08074 1.70369 1.24247 1.10653 1.17556 1.26564 0.84605 0.90395 1.00494 1.20299 0.87930 0.95602 0.92808 1.60831 1.09208 1.51362 1.09633 1.22507 0.92847 0.95604 0.96569 1.21802 0.99490 0.84205 0.91305 0.91940 1.22655 0.92758 0.99956 0.99647 1.22748 1.02182 0.92164 0.98794 1.22556 0.81499 0.99693 0.99790 1.48290 1.11427 1.18310 1.56752 1.19148 0.84856 0.83049 0.79587 1.90599 1.21406 1.78355 1.47711 1.23189 1.01609 0.96978 1.03395 1.84655 1.17930 1.17564 1.73686 1.22514 1.00388 1.04823 1.40008 0.92531 1.25532 1.02745 0.93859 0.93684 1.70021 1.38704 1.07867 1.39068 0.85850 0.79994 0.79293 0.81095 1.18509 1.18117 1.16696 1.84329 1.18179 1.37251 1.70430 0.87592 0.89623 0.87784 0.79309 0.87548 0.90316 0.83149 0.90512 0.91723 0.87870 0.88782 0.87384 0.90585 0.90944 0.91372 0.88559 0.89128 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.09 10.43 71.23 0.74 -0.34 16 2 C -0.05 -1.43 7.39 24.79 0.18 -1.25 16 3 C -0.07 -2.46 11.80 83.40 0.98 -1.48 16 4 N -0.50 -19.50 11.29 -303.82 -3.43 -22.93 16 5 C 0.19 6.23 7.86 88.34 0.69 6.93 16 6 C 0.16 4.12 6.31 85.56 0.54 4.66 16 7 N -0.67 -18.61 3.28 -517.93 -1.70 -20.31 16 8 C 0.05 1.01 5.27 86.31 0.46 1.46 16 9 C 0.14 2.56 3.28 45.34 0.15 2.71 16 10 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 11 C -0.11 -1.13 6.48 31.78 0.21 -0.92 16 12 C -0.12 -1.37 7.09 31.99 0.23 -1.15 16 13 C 0.09 1.69 6.69 86.86 0.58 2.27 16 14 N -0.61 -16.02 3.07 -788.04 -2.42 -18.43 16 15 C 0.55 20.41 7.44 87.66 0.65 21.07 16 16 O -0.51 -21.62 12.01 -3.03 -0.04 -21.65 16 17 C -0.10 -4.28 5.16 71.24 0.37 -3.92 16 18 S -0.17 -8.96 18.55 -56.49 -1.05 -10.01 16 19 C -0.53 -32.70 10.04 67.95 0.68 -32.02 16 20 H 0.06 3.69 8.03 -2.91 -0.02 3.67 16 21 C 0.05 2.88 5.50 84.86 0.47 3.35 16 22 N -0.92 -58.03 13.97 21.65 0.30 -57.72 16 23 Si 0.92 47.38 27.74 68.60 1.90 49.28 16 24 H -0.26 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.24 -12.84 6.74 99.48 0.67 -12.17 16 27 O -0.21 -6.75 10.78 -3.86 -0.04 -6.79 16 28 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.19 5.59 8.06 -2.91 -0.02 5.57 16 32 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.35 10.65 7.41 -89.69 -0.66 9.99 16 35 H 0.08 1.42 8.07 -2.39 -0.02 1.40 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.09 0.71 7.81 -2.39 -0.02 0.69 16 39 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.43 7.47 -2.39 -0.02 1.42 16 43 H 0.10 3.88 7.85 -2.39 -0.02 3.86 16 44 H 0.09 3.80 8.14 -2.39 -0.02 3.78 16 45 H 0.28 16.11 8.31 -92.71 -0.77 15.34 16 Total: -1.00 -84.53 383.09 0.76 -83.77 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.29 Total: 23.43 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 6.93 Total: 1.38 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -7.25 Total: -119.41 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.08 Total: -28.44 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 1.90 Total: 49.28 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.05 Total: -10.01 kcal Total: -84.53 0.76 -83.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319049166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.419 kcal (2) G-P(sol) polarization free energy of solvation -84.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds