Wall clock time and date at job start Tue Mar 31 2020 22:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37474 * 123.35055 * 2 1 4 4 C 1.33815 * 115.09720 * 179.76517 * 3 2 1 5 5 S 1.70620 * 110.95691 * 0.48740 * 4 3 2 6 6 C 1.36652 * 123.34904 * 180.29176 * 2 1 3 7 7 C 1.46576 * 125.45795 * 359.96909 * 6 2 1 8 8 O 1.21705 * 120.00058 * 359.97438 * 7 6 2 9 9 N 1.34776 * 119.99769 * 179.97438 * 7 6 2 10 10 C 1.46505 * 119.99844 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46861 * 34.60740 * 10 9 7 12 12 C 1.52995 * 109.47180 * 274.60515 * 10 9 7 13 13 C 1.53000 * 109.47121 * 154.60583 * 10 9 7 14 14 N 1.46906 * 109.47029 * 305.18688 * 13 10 9 15 15 C 1.46904 * 110.99969 * 163.93476 * 14 13 10 16 16 C 1.46899 * 110.99818 * 287.88870 * 14 13 10 17 17 C 1.50704 * 109.46900 * 170.00143 * 16 14 13 18 18 O 1.21287 * 119.99936 * 0.02562 * 17 16 14 19 19 N 1.34776 * 119.99830 * 179.97438 * 17 16 14 20 20 C 1.37102 * 119.99887 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00057 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99548 * 180.02562 * 20 19 17 23 23 N 1.31406 * 120.00461 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99638 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47059 * 90.00306 * 24 22 20 26 26 H 1.48502 * 109.46955 * 210.00013 * 24 22 20 27 27 H 1.48502 * 109.46908 * 330.00066 * 24 22 20 28 28 H 1.08998 * 109.46972 * 269.70813 * 1 2 3 29 29 H 1.08994 * 109.47127 * 149.70272 * 1 2 3 30 30 H 1.09001 * 109.46869 * 29.70633 * 1 2 3 31 31 H 1.08001 * 122.44777 * 359.97438 * 3 2 1 32 32 H 1.08003 * 124.52017 * 180.19207 * 4 3 2 33 33 H 0.96993 * 120.00257 * 359.97438 * 9 7 6 34 34 H 1.09000 * 109.47407 * 299.99890 * 12 10 9 35 35 H 1.08996 * 109.47205 * 60.00212 * 12 10 9 36 36 H 1.09005 * 109.47116 * 179.97438 * 12 10 9 37 37 H 1.08999 * 109.46928 * 65.18017 * 13 10 9 38 38 H 1.08994 * 109.47383 * 185.18781 * 13 10 9 39 39 H 1.08995 * 109.46957 * 54.89330 * 15 14 13 40 40 H 1.08998 * 109.46750 * 174.89427 * 15 14 13 41 41 H 1.09000 * 109.46776 * 294.89276 * 15 14 13 42 42 H 1.08996 * 109.47104 * 289.99880 * 16 14 13 43 43 H 1.08999 * 109.47355 * 50.00084 * 16 14 13 44 44 H 0.96998 * 119.99958 * 0.02562 * 19 17 16 45 45 H 0.97001 * 120.00192 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2629 1.1484 0.0000 4 6 3.5871 0.9563 0.0050 5 16 3.9624 -0.7081 -0.0036 6 6 2.2583 -1.1415 -0.0058 7 6 1.7284 -2.5081 -0.0121 8 8 0.5257 -2.6944 -0.0120 9 7 2.5731 -3.5583 -0.0181 10 6 2.0435 -4.9243 -0.0238 11 1 1.1228 -4.9545 -0.6065 12 6 1.7529 -5.3646 1.4123 13 6 3.0734 -5.8679 -0.6481 14 7 3.4451 -5.3745 -1.9809 15 6 4.6818 -6.0120 -2.4523 16 6 2.3508 -5.5745 -2.9404 17 6 2.6654 -4.8440 -4.2204 18 8 3.6995 -4.2188 -4.3235 19 7 1.7979 -4.8864 -5.2511 20 6 2.0838 -4.2214 -6.4155 21 1 3.0043 -3.6640 -6.5069 22 6 1.1893 -4.2647 -7.4778 23 7 0.0691 -4.9425 -7.3663 24 14 1.5792 -3.3593 -9.0645 25 1 2.3242 -4.2614 -9.9789 26 1 0.3141 -2.9312 -9.7138 27 1 2.4090 -2.1654 -8.7621 28 1 -0.3633 -0.0052 1.0276 29 1 -0.3633 -0.8873 -0.5184 30 1 -0.3633 0.8926 -0.5093 31 1 1.8201 2.1334 -0.0004 32 1 4.3206 1.7491 0.0087 33 1 3.5316 -3.4098 -0.0185 34 1 2.6736 -5.3344 1.9950 35 1 1.0192 -4.6924 1.8570 36 1 1.3584 -6.3808 1.4080 37 1 3.9599 -5.9080 -0.0153 38 1 2.6448 -6.8661 -0.7368 39 1 4.5667 -7.0954 -2.4209 40 1 4.8851 -5.6977 -3.4760 41 1 5.5109 -5.7158 -1.8098 42 1 2.2392 -6.6388 -3.1474 43 1 1.4231 -5.1869 -2.5194 44 1 0.9711 -5.3867 -5.1688 45 1 -0.5552 -4.9731 -8.1081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322104396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:59 Heat of formation + Delta-G solvation = -34.427180 kcal Electronic energy + Delta-G solvation = -27610.856694 eV Core-core repulsion = 23755.206905 eV Total energy + Delta-G solvation = -3855.649789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.92710 -38.69942 -37.89519 -36.73079 -34.67112 -33.73179 -31.47505 -31.20242 -30.70793 -28.04535 -27.87082 -26.93797 -24.67238 -23.72514 -22.69784 -21.67504 -20.54021 -19.09685 -18.86761 -18.14733 -17.79746 -16.28621 -16.06698 -15.81097 -15.32158 -15.11407 -14.77677 -14.68557 -14.32033 -13.95531 -13.78402 -13.57542 -13.54516 -13.33987 -13.12424 -12.82581 -12.48749 -12.31335 -12.13592 -12.08014 -12.01376 -11.78915 -11.72149 -11.46202 -11.43285 -11.18319 -11.00713 -10.89889 -10.61515 -10.36399 -10.18353 -9.72618 -9.43718 -9.04488 -8.72076 -8.43528 -8.41268 -7.95121 -7.86052 -6.37641 -3.78286 0.53311 1.49263 1.87658 2.38160 3.20009 3.20040 3.28471 3.34517 3.38425 3.94020 4.00529 4.25945 4.70671 4.81330 4.92177 5.09801 5.16380 5.19810 5.23732 5.30940 5.31660 5.42724 5.54965 5.56801 5.62000 5.69480 5.73591 5.76221 5.90591 5.93949 5.99187 6.02309 6.04070 6.11857 6.31963 6.34019 6.47973 6.51554 6.64030 7.24798 7.35040 7.58730 7.62925 8.10165 8.33786 8.65885 9.22027 9.58846 10.10525 10.80203 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009200 B = 0.003712 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.764971 B = 7541.548628 C = 8978.657353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.026 4.026 3 C -0.149 4.149 4 C -0.233 4.233 5 S 0.204 5.796 6 C -0.267 4.267 7 C 0.595 3.405 8 O -0.533 6.533 9 N -0.701 5.701 10 C 0.146 3.854 11 H 0.091 0.909 12 C -0.161 4.161 13 C 0.042 3.958 14 N -0.516 5.516 15 C 0.024 3.976 16 C 0.043 3.957 17 C 0.446 3.554 18 O -0.577 6.577 19 N -0.564 5.564 20 C -0.297 4.297 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.142 0.858 32 H 0.167 0.833 33 H 0.400 0.600 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.050 0.950 39 H 0.014 0.986 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.047 0.953 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.002 3.678 19.146 20.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.041 4.041 3 C -0.181 4.181 4 C -0.371 4.371 5 S 0.472 5.528 6 C -0.387 4.387 7 C 0.382 3.618 8 O -0.412 6.412 9 N -0.351 5.351 10 C 0.041 3.959 11 H 0.109 0.891 12 C -0.220 4.220 13 C -0.086 4.086 14 N -0.240 5.240 15 C -0.124 4.124 16 C -0.088 4.088 17 C 0.231 3.769 18 O -0.462 6.462 19 N -0.201 5.201 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.082 0.918 31 H 0.160 0.840 32 H 0.184 0.816 33 H 0.234 0.766 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.032 0.968 40 H 0.114 0.886 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.105 0.895 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.188 3.593 18.950 20.256 hybrid contribution -1.290 0.331 -0.957 1.639 sum 4.898 3.924 17.994 19.057 Atomic orbital electron populations 1.20722 0.88769 1.04090 1.02683 1.19512 0.97869 0.90421 0.96262 1.19906 0.92599 0.99617 1.05943 1.25241 1.00658 1.01975 1.09177 1.83023 1.04228 0.97980 1.67528 1.24426 0.97199 0.97501 1.19568 1.16839 0.86119 0.82855 0.76020 1.90758 1.14354 1.85258 1.50829 1.45600 1.09628 1.05242 1.74661 1.20989 0.97858 0.80780 0.96234 0.89146 1.22152 1.02015 1.01731 0.96086 1.22495 0.98659 0.96059 0.91428 1.61551 1.03771 1.58014 1.00629 1.22515 0.91075 0.94865 1.03910 1.21916 0.94903 0.98613 0.93393 1.19689 0.86121 0.86306 0.84788 1.90476 1.26632 1.46492 1.82569 1.41866 1.19850 1.46053 1.12309 1.19673 1.05906 1.27456 0.89664 0.87984 1.25245 0.95255 0.97687 0.99724 1.69612 1.09821 1.41625 1.33230 0.85881 0.77709 0.79666 0.81170 1.20461 1.20929 1.19436 0.90983 0.88698 0.91789 0.83980 0.81564 0.76573 0.92456 0.91769 0.91552 0.90268 0.93228 0.96789 0.88631 0.92162 0.93485 0.89495 0.77543 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 9.55 36.01 0.34 -0.99 16 2 C -0.03 -0.35 5.91 -105.47 -0.62 -0.97 16 3 C -0.15 -1.69 9.97 -41.41 -0.41 -2.11 16 4 C -0.23 -2.44 10.92 29.18 0.32 -2.12 16 5 S 0.20 2.35 22.16 -107.50 -2.38 -0.03 16 6 C -0.27 -3.85 6.45 -36.79 -0.24 -4.08 16 7 C 0.60 9.41 7.75 -12.90 -0.10 9.31 16 8 O -0.53 -9.66 13.90 5.18 0.07 -9.59 16 9 N -0.70 -9.55 4.79 -55.14 -0.26 -9.81 16 10 C 0.15 1.83 2.52 -67.93 -0.17 1.66 16 11 H 0.09 1.34 6.22 -51.93 -0.32 1.02 16 12 C -0.16 -1.60 9.49 37.16 0.35 -1.25 16 13 C 0.04 0.50 4.53 -3.82 -0.02 0.48 16 14 N -0.52 -8.16 4.17 -244.37 -1.02 -9.18 16 15 C 0.02 0.37 9.19 60.07 0.55 0.92 16 16 C 0.04 0.78 5.30 -4.97 -0.03 0.76 16 17 C 0.45 10.65 7.42 -10.98 -0.08 10.56 16 18 O -0.58 -15.43 13.96 5.55 0.08 -15.36 16 19 N -0.56 -14.62 5.29 -10.96 -0.06 -14.68 16 20 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -25.01 13.05 55.50 0.72 -24.29 16 24 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.09 1.47 6.02 -51.93 -0.31 1.16 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.17 1.27 8.06 -52.48 -0.42 0.85 16 33 H 0.40 5.00 7.72 -40.82 -0.32 4.68 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.79 7.99 -51.93 -0.42 0.37 16 38 H 0.05 0.54 8.05 -51.93 -0.42 0.12 16 39 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 40 H 0.10 1.83 5.79 -51.93 -0.30 1.52 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 43 H 0.09 1.56 6.50 -51.93 -0.34 1.22 16 44 H 0.39 9.82 7.90 -40.82 -0.32 9.50 16 45 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 385.23 15.07 5.81 5.81 Total: -1.00 -33.07 385.23 -8.89 -41.96 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -6.48 Total: 14.66 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -0.34 Total: 4.13 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -0.62 Total: -57.97 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: 0.15 Total: -24.94 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.38 Total: -0.03 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.07 -8.89 -41.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322104396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.534 kcal (2) G-P(sol) polarization free energy of solvation -33.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds