Wall clock time and date at job start Tue Mar 31 2020 22:31:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.34327 * 126.44614 * 2 1
4 4 N 1.34477 * 107.67072 * 180.02562 * 3 2 1
5 5 C 1.30255 * 108.70280 * 359.97438 * 4 3 2
6 6 C 1.50699 * 125.62333 * 179.97438 * 5 4 3
7 7 H 1.08999 * 109.47021 * 195.02933 * 6 5 4
8 8 C 1.52998 * 109.47119 * 75.02491 * 6 5 4
9 9 N 1.46904 * 109.46692 * 315.02636 * 6 5 4
10 10 C 1.47959 * 111.00127 * 82.17566 * 9 6 5
11 11 C 1.53928 * 86.18364 * 137.57820 * 10 9 6
12 12 C 1.47962 * 110.99445 * 181.53066 * 9 6 5
13 13 H 1.08993 * 113.86628 * 336.74909 * 12 9 6
14 14 C 1.53006 * 113.75832 * 108.10173 * 12 9 6
15 15 N 1.46505 * 109.47046 * 301.06619 * 14 12 9
16 16 C 1.34777 * 119.99961 * 180.02562 * 15 14 12
17 17 O 1.21280 * 119.99967 * 359.97438 * 16 15 14
18 18 C 1.50699 * 119.99755 * 179.97438 * 16 15 14
19 19 S 1.80997 * 109.46797 * 179.97438 * 18 16 15
20 20 C 1.76204 * 99.99945 * 179.97438 * 19 18 16
21 21 H 1.07996 * 119.99655 * 359.97438 * 20 19 18
22 22 C 1.38798 * 120.00043 * 180.02562 * 20 19 18
23 23 N 1.31628 * 120.00102 * 359.97438 * 22 20 19
24 24 Si 1.86806 * 119.99874 * 180.02562 * 22 20 19
25 25 H 1.48500 * 109.46714 * 89.99916 * 24 22 20
26 26 H 1.48500 * 109.46806 * 209.99772 * 24 22 20
27 27 H 1.48496 * 109.47247 * 329.99894 * 24 22 20
28 28 O 1.33969 * 108.75760 * 0.23243 * 5 4 3
29 29 H 1.08996 * 109.47132 * 89.97634 * 1 2 3
30 30 H 1.08997 * 109.46919 * 209.98044 * 1 2 3
31 31 H 1.08995 * 109.46708 * 329.98063 * 1 2 3
32 32 H 1.08002 * 126.16672 * 359.97438 * 3 2 1
33 33 H 1.08997 * 109.47041 * 309.96050 * 8 6 5
34 34 H 1.09002 * 109.47049 * 69.95756 * 8 6 5
35 35 H 1.08997 * 109.47206 * 189.96004 * 8 6 5
36 36 H 1.09004 * 113.75790 * 23.25645 * 10 9 6
37 37 H 1.08996 * 113.85709 * 251.91352 * 10 9 6
38 38 H 1.08996 * 113.73494 * 221.91750 * 11 10 9
39 39 H 1.09006 * 113.73344 * 90.63201 * 11 10 9
40 40 H 1.08994 * 109.47223 * 181.05896 * 14 12 9
41 41 H 1.09004 * 109.47050 * 61.05825 * 14 12 9
42 42 H 0.97003 * 119.99481 * 359.97438 * 15 14 12
43 43 H 1.09004 * 109.46718 * 299.99273 * 18 16 15
44 44 H 1.08994 * 109.47735 * 59.99454 * 18 16 15
45 45 H 0.96997 * 120.00236 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3050 1.0805 0.0000
4 7 3.5782 0.6477 -0.0006
5 6 3.5766 -0.6548 -0.0004
6 6 4.8004 -1.5341 -0.0014
7 1 4.5161 -2.5522 -0.2674
8 6 5.4334 -1.5288 1.3915
9 7 5.7688 -1.0242 -0.9813
10 6 6.5655 0.0850 -0.4118
11 6 7.7797 -0.5767 -1.0879
12 6 6.9707 -1.8854 -1.0364
13 1 7.1369 -2.4691 -0.1311
14 6 7.0711 -2.7227 -2.3131
15 7 5.8896 -3.5814 -2.4280
16 6 5.7604 -4.4125 -3.4812
17 8 6.6219 -4.4491 -4.3340
18 6 4.5454 -5.2961 -3.5990
19 16 4.6640 -6.2866 -5.1093
20 6 3.1604 -7.1981 -4.9963
21 1 2.4968 -7.0434 -4.1584
22 6 2.8292 -8.1158 -5.9835
23 7 3.6382 -8.3048 -7.0045
24 14 1.2347 -9.0817 -5.8641
25 1 0.1493 -8.3313 -6.5453
26 1 1.4072 -10.4044 -6.5166
27 1 0.8802 -9.2770 -4.4353
28 8 2.3075 -1.0840 -0.0048
29 1 -0.3633 0.0004 -1.0276
30 1 -0.3633 -0.8901 0.5135
31 1 -0.3632 0.8898 0.5141
32 1 1.9823 2.1112 -0.0004
33 1 5.5555 -0.5003 1.7311
34 1 4.7879 -2.0665 2.0860
35 1 6.4077 -2.0157 1.3497
36 1 6.6115 0.0785 0.6772
37 1 6.3142 1.0635 -0.8209
38 1 8.6750 -0.5896 -0.4663
39 1 7.9686 -0.2172 -2.0995
40 1 7.9674 -3.3415 -2.2723
41 1 7.1250 -2.0615 -3.1780
42 1 5.2008 -3.5524 -1.7456
43 1 4.4917 -5.9571 -2.7339
44 1 3.6488 -4.6777 -3.6400
45 1 3.4067 -8.9458 -7.6947
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001323182325.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:31:56
Heat of formation + Delta-G solvation = 0.914423 kcal
Electronic energy + Delta-G solvation = -26882.717599 eV
Core-core repulsion = 23028.600337 eV
Total energy + Delta-G solvation = -3854.117262 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-44.34767 -41.70376 -40.33190 -35.97445 -35.57815 -34.71628 -34.59193 -32.68659
-31.48122 -28.83328 -28.45062 -27.71029 -27.63511 -24.75980 -24.18781 -22.88055
-21.87001 -21.70556 -20.22641 -19.70147 -18.29053 -17.95568 -17.79823 -17.50096
-17.22453 -16.88813 -16.58088 -16.06172 -15.84747 -15.54524 -15.25304 -15.07636
-14.73222 -14.53611 -14.42593 -14.14508 -14.06154 -13.84364 -13.39239 -13.25269
-13.17810 -13.16355 -12.89693 -12.73653 -12.63385 -12.36215 -12.33413 -12.05132
-11.90951 -11.80012 -11.68413 -11.47939 -11.15252 -10.94270 -10.29597 -10.10561
-9.85904 -9.55613 -8.67773 -8.35407 -6.13767 0.42551 1.25569 1.41746
1.45572 1.54306 1.57340 1.61142 1.69920 2.22818 2.27370 2.88929
2.98540 3.00870 3.30842 3.53327 3.64969 3.74185 3.90937 3.93468
4.03234 4.05372 4.09734 4.19027 4.25682 4.35205 4.41074 4.46788
4.48996 4.57014 4.63424 4.70443 4.80391 4.89681 4.91149 5.02765
5.04263 5.08125 5.17801 5.26462 5.29778 5.37576 5.40610 5.47120
5.95479 6.18889 6.45369 6.73908 7.05588 7.22140 8.73938
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.010395 B = 0.002856 C = 0.002332
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2692.988682 B = 9800.051179 C =12002.745402
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 C -0.055 4.055
3 C -0.063 4.063
4 N -0.484 5.484
5 C 0.187 3.813
6 C 0.141 3.859
7 H 0.105 0.895
8 C -0.177 4.177
9 N -0.484 5.484
10 C 0.009 3.991
11 C -0.125 4.125
12 C 0.025 3.975
13 H 0.121 0.879
14 C 0.139 3.861
15 N -0.708 5.708
16 C 0.533 3.467
17 O -0.564 6.564
18 C -0.130 4.130
19 S -0.147 6.147
20 C -0.548 4.548
21 H 0.081 0.919
22 C 0.014 3.986
23 N -0.911 5.911
24 Si 0.999 3.001
25 H -0.268 1.268
26 H -0.276 1.276
27 H -0.258 1.258
28 O -0.219 6.219
29 H 0.090 0.910
30 H 0.082 0.918
31 H 0.117 0.883
32 H 0.204 0.796
33 H 0.074 0.926
34 H 0.075 0.925
35 H 0.099 0.901
36 H 0.101 0.899
37 H 0.077 0.923
38 H 0.106 0.894
39 H 0.085 0.915
40 H 0.077 0.923
41 H 0.054 0.946
42 H 0.406 0.594
43 H 0.110 0.890
44 H 0.101 0.899
45 H 0.272 0.728
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.190 19.954 23.757 31.026
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.108 4.108
3 C -0.201 4.201
4 N -0.213 5.213
5 C -0.020 4.020
6 C 0.031 3.969
7 H 0.123 0.877
8 C -0.235 4.235
9 N -0.209 5.209
10 C -0.119 4.119
11 C -0.164 4.164
12 C -0.084 4.084
13 H 0.138 0.862
14 C 0.015 3.985
15 N -0.362 5.362
16 C 0.318 3.682
17 O -0.442 6.442
18 C -0.282 4.282
19 S 0.080 5.920
20 C -0.696 4.696
21 H 0.099 0.901
22 C -0.191 4.191
23 N -0.547 5.547
24 Si 0.820 3.180
25 H -0.194 1.194
26 H -0.201 1.201
27 H -0.182 1.182
28 O -0.107 6.107
29 H 0.109 0.891
30 H 0.101 0.899
31 H 0.136 0.864
32 H 0.221 0.779
33 H 0.093 0.907
34 H 0.094 0.906
35 H 0.118 0.882
36 H 0.119 0.881
37 H 0.096 0.904
38 H 0.124 0.876
39 H 0.104 0.896
40 H 0.095 0.905
41 H 0.073 0.927
42 H 0.243 0.757
43 H 0.128 0.872
44 H 0.119 0.881
45 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 1.401 20.251 21.618 29.654
hybrid contribution -2.529 -1.034 1.361 3.052
sum -1.127 19.216 22.979 29.976
Atomic orbital electron populations
1.20476 0.81458 1.05749 1.04729 1.24233 0.96533 0.84066 1.05969
1.23550 0.87557 1.01551 1.07456 1.70319 1.23700 1.09333 1.17926
1.26256 0.84259 0.90511 1.00960 1.20516 0.86134 0.95300 0.94999
0.87724 1.22503 1.02788 1.04035 0.94211 1.68686 1.07724 1.06376
1.38064 1.24036 0.91532 0.95856 1.00433 1.23328 0.97816 0.92474
1.02755 1.23950 0.90977 0.95489 0.97935 0.86184 1.21398 0.87693
0.91820 0.97579 1.45693 1.24833 1.40845 1.24783 1.20022 0.86674
0.80067 0.81389 1.90685 1.43563 1.68411 1.41566 1.23371 0.99494
1.01222 1.04089 1.85542 1.30849 1.48436 1.27158 1.23203 1.06968
1.26990 1.12441 0.90067 1.26133 1.01816 0.97316 0.93828 1.70180
1.38428 1.34884 1.11224 0.84951 0.76735 0.77137 0.79138 1.19357
1.20118 1.18157 1.84387 1.18277 1.37796 1.70197 0.89139 0.89925
0.86449 0.77879 0.90681 0.90559 0.88212 0.88090 0.90444 0.87594
0.89603 0.90493 0.92719 0.75718 0.87161 0.88066 0.91939
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.70 10.43 71.24 0.74 0.04 16
2 C -0.06 -1.05 7.39 24.79 0.18 -0.87 16
3 C -0.06 -1.23 11.80 83.39 0.98 -0.25 16
4 N -0.48 -11.20 10.62 -303.83 -3.23 -14.43 16
5 C 0.19 4.19 7.14 88.34 0.63 4.82 16
6 C 0.14 2.35 2.84 44.17 0.13 2.47 16
7 H 0.10 1.66 6.40 -2.39 -0.02 1.65 16
8 C -0.18 -1.86 7.83 71.98 0.56 -1.30 16
9 N -0.48 -8.62 5.86 -863.00 -5.05 -13.68 16
10 C 0.01 0.13 6.98 86.40 0.60 0.73 16
11 C -0.13 -1.47 7.84 31.24 0.24 -1.22 16
12 C 0.03 0.36 3.18 45.02 0.14 0.50 16
13 H 0.12 1.10 5.95 -2.39 -0.01 1.08 16
14 C 0.14 3.12 5.80 86.38 0.50 3.62 16
15 N -0.71 -19.12 5.50 -463.04 -2.55 -21.66 16
16 C 0.53 20.59 7.85 87.66 0.69 21.28 16
17 O -0.56 -26.90 15.86 -3.03 -0.05 -26.95 16
18 C -0.13 -5.42 6.16 71.24 0.44 -4.98 16
19 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16
20 C -0.55 -31.91 9.50 67.95 0.65 -31.27 16
21 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16
22 C 0.01 0.80 5.49 84.86 0.47 1.27 16
23 N -0.91 -56.58 13.22 21.65 0.29 -56.29 16
24 Si 1.00 44.05 29.55 68.60 2.03 46.08 16
25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16
26 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16
27 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16
28 O -0.22 -5.20 10.78 -3.77 -0.04 -5.24 16
29 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16
30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16
31 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16
32 H 0.20 2.66 8.06 -2.91 -0.02 2.64 16
33 H 0.07 0.86 6.36 -2.39 -0.02 0.84 16
34 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16
35 H 0.10 0.63 5.91 -2.39 -0.01 0.62 16
36 H 0.10 1.09 5.00 -2.38 -0.01 1.08 16
37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16
38 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16
39 H 0.09 1.22 7.94 -2.38 -0.02 1.20 16
40 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16
41 H 0.05 1.47 7.91 -2.39 -0.02 1.45 16
42 H 0.41 8.87 6.51 -92.71 -0.60 8.27 16
43 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16
44 H 0.10 3.93 8.14 -2.40 -0.02 3.91 16
45 H 0.27 15.62 8.31 -92.71 -0.77 14.84 16
Total: -1.00 -83.47 382.94 -2.39 -85.85
By element:
Atomic # 1 Polarization: 20.58 SS G_CDS: 0.42 Total: 20.99 kcal
Atomic # 6 Polarization: -12.11 SS G_CDS: 6.96 Total: -5.15 kcal
Atomic # 7 Polarization: -95.52 SS G_CDS: -10.54 Total: -106.06 kcal
Atomic # 8 Polarization: -32.10 SS G_CDS: -0.09 Total: -32.19 kcal
Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal
Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal
Total: -83.47 -2.39 -85.85 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001323182325.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.766 kcal
(2) G-P(sol) polarization free energy of solvation -83.466 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.300 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.386 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.852 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.914 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds