Wall clock time and date at job start Tue Mar 31 2020 22:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30178 * 126.80258 * 2 1 4 4 O 1.20922 * 111.60213 * 180.25013 * 3 2 1 5 5 C 1.34039 * 111.57047 * 359.74588 * 4 3 2 6 6 C 1.35456 * 106.44486 * 359.97438 * 5 4 3 7 7 C 1.50700 * 128.00715 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47174 * 260.02649 * 7 6 5 9 9 C 1.46900 * 111.00018 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46954 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.87378 * 295.69863 * 10 9 8 12 12 C 1.54327 * 110.00988 * 174.59941 * 10 9 8 13 13 C 1.55153 * 102.94211 * 218.31833 * 12 10 9 14 14 C 1.54908 * 101.58630 * 35.49999 * 13 12 10 15 15 N 1.47022 * 109.88494 * 56.71642 * 10 9 8 16 16 C 1.34780 * 125.64449 * 298.54565 * 15 10 9 17 17 O 1.21278 * 120.00167 * 0.02562 * 16 15 10 18 18 C 1.50701 * 119.99984 * 179.97438 * 16 15 10 19 19 S 1.80994 * 109.47265 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00059 * 180.02562 * 19 18 16 21 21 H 1.08009 * 119.99809 * 359.97438 * 20 19 18 22 22 C 1.38795 * 120.00168 * 179.97438 * 20 19 18 23 23 N 1.31639 * 120.00192 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99871 * 359.97438 * 22 20 19 25 25 H 1.48494 * 109.46889 * 90.00427 * 24 22 20 26 26 H 1.48502 * 109.47130 * 209.99962 * 24 22 20 27 27 H 1.48490 * 109.47276 * 330.00100 * 24 22 20 28 28 H 1.09001 * 109.47147 * 270.16892 * 1 2 3 29 29 H 1.09003 * 109.47078 * 30.16820 * 1 2 3 30 30 H 1.08994 * 109.47020 * 150.16402 * 1 2 3 31 31 H 1.07995 * 126.77901 * 179.97438 * 5 4 3 32 32 H 1.08996 * 109.46961 * 140.02475 * 7 6 5 33 33 H 1.08997 * 109.47003 * 20.02323 * 7 6 5 34 34 H 1.00908 * 111.00152 * 303.95610 * 8 7 6 35 35 H 1.08994 * 109.47283 * 59.99867 * 9 8 7 36 36 H 1.08995 * 109.46806 * 299.99293 * 9 8 7 37 37 H 1.09006 * 110.71875 * 336.68167 * 12 10 9 38 38 H 1.09003 * 110.72034 * 99.95202 * 12 10 9 39 39 H 1.09006 * 111.00338 * 277.42810 * 13 12 10 40 40 H 1.08997 * 111.03848 * 153.59537 * 13 12 10 41 41 H 1.08992 * 110.36921 * 204.15530 * 14 13 12 42 42 H 1.09001 * 110.45822 * 81.87204 * 14 13 12 43 43 H 1.09009 * 109.47209 * 300.00496 * 18 16 15 44 44 H 1.09006 * 109.46881 * 59.99944 * 18 16 15 45 45 H 0.96998 * 120.00075 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 -0.0049 5 6 3.6025 -0.6068 -0.0034 6 6 2.3539 -1.1321 0.0039 7 6 1.9590 -2.5864 0.0079 8 7 1.5920 -2.9979 -1.3537 9 6 1.1999 -4.4131 -1.3883 10 6 0.8249 -4.8036 -2.8194 11 1 -0.0555 -4.2451 -3.1373 12 6 0.5414 -6.3187 -2.8963 13 6 1.1510 -6.7172 -4.2662 14 6 2.3899 -5.7899 -4.3370 15 7 1.9487 -4.5234 -3.7249 16 6 2.4870 -3.3096 -3.9565 17 8 2.0423 -2.3317 -3.3938 18 6 3.6421 -3.1679 -4.9140 19 16 4.1368 -1.4294 -5.0094 20 6 5.4630 -1.5516 -6.1630 21 1 5.7343 -2.5128 -6.5742 22 6 6.1591 -0.4126 -6.5434 23 7 7.1502 -0.5040 -7.4049 24 14 5.6894 1.2499 -5.8328 25 1 6.4640 1.4934 -4.5896 26 1 5.9936 2.3148 -6.8221 27 1 4.2375 1.2631 -5.5221 28 1 -0.3633 0.0030 1.0277 29 1 -0.3633 0.8885 -0.5165 30 1 -0.3633 -0.8914 -0.5113 31 1 4.5339 -1.1534 -0.0072 32 1 1.1073 -2.7298 0.6728 33 1 2.7974 -3.1896 0.3561 34 1 0.8595 -2.4108 -1.7239 35 1 0.3428 -4.5688 -0.7332 36 1 2.0328 -5.0292 -1.0496 37 1 1.0410 -6.8462 -2.0837 38 1 -0.5313 -6.5116 -2.8807 39 1 0.4569 -6.5045 -5.0794 40 1 1.4472 -7.7661 -4.2725 41 1 2.6838 -5.6279 -5.3740 42 1 3.2179 -6.2165 -3.7709 43 1 4.4825 -3.7656 -4.5606 44 1 3.3397 -3.5148 -5.9021 45 1 7.6364 0.2921 -7.6711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324117291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:26 Heat of formation + Delta-G solvation = 24.591272 kcal Electronic energy + Delta-G solvation = -27944.411372 eV Core-core repulsion = 24091.320815 eV Total energy + Delta-G solvation = -3853.090557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.80737 -41.00536 -38.24544 -37.40641 -35.25388 -34.67160 -33.15820 -32.65276 -30.90294 -29.98875 -29.60330 -27.83757 -27.18803 -24.86957 -23.25756 -22.44791 -22.20564 -21.85752 -20.22369 -19.38853 -18.49010 -18.39530 -18.02998 -17.39728 -17.10763 -16.50834 -16.12345 -15.83526 -15.76878 -15.45058 -15.11660 -14.88078 -14.65980 -14.26692 -14.21168 -14.03169 -13.91298 -13.66578 -13.46116 -13.34303 -13.27959 -13.12468 -13.09193 -12.91855 -12.56109 -12.44396 -12.05438 -11.89878 -11.88593 -11.83684 -11.53916 -11.17667 -10.80340 -10.48255 -10.46251 -10.32643 -9.53901 -8.94411 -8.79139 -8.52245 -6.19724 0.63098 1.01647 1.28659 1.29483 1.45786 1.57171 1.94248 2.22602 2.30127 2.44417 2.74758 2.86380 3.26778 3.45121 3.64585 3.64825 3.83149 3.97921 4.04991 4.12057 4.17753 4.26134 4.34213 4.41560 4.49019 4.52751 4.58563 4.61167 4.64263 4.67798 4.78730 4.80408 4.90861 4.93537 4.96440 5.03809 5.15929 5.20880 5.27391 5.42628 5.62488 5.70765 6.10786 6.27975 6.62752 6.70007 6.94065 7.35612 7.51431 8.60678 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007573 B = 0.005328 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3696.642954 B = 5254.189904 C = 8433.906230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.016 3.984 3 N -0.406 5.406 4 O 0.071 5.929 5 C -0.043 4.043 6 C -0.196 4.196 7 C 0.143 3.857 8 N -0.673 5.673 9 C 0.053 3.947 10 C 0.136 3.864 11 H 0.059 0.941 12 C -0.113 4.113 13 C -0.122 4.122 14 C 0.088 3.912 15 N -0.610 5.610 16 C 0.547 3.453 17 O -0.504 6.504 18 C -0.101 4.101 19 S -0.164 6.164 20 C -0.528 4.528 21 H 0.058 0.942 22 C 0.050 3.950 23 N -0.918 5.918 24 Si 0.911 3.089 25 H -0.263 1.263 26 H -0.259 1.259 27 H -0.242 1.242 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.236 0.764 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.344 0.656 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.622 -15.257 16.219 27.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.144 4.144 3 N -0.117 5.117 4 O 0.011 5.989 5 C -0.125 4.125 6 C -0.201 4.201 7 C 0.014 3.986 8 N -0.308 5.308 9 C -0.076 4.076 10 C 0.032 3.968 11 H 0.077 0.923 12 C -0.152 4.152 13 C -0.160 4.160 14 C -0.034 4.034 15 N -0.347 5.347 16 C 0.333 3.667 17 O -0.377 6.377 18 C -0.252 4.252 19 S 0.063 5.937 20 C -0.676 4.676 21 H 0.076 0.924 22 C -0.155 4.155 23 N -0.556 5.556 24 Si 0.734 3.266 25 H -0.188 1.188 26 H -0.184 1.184 27 H -0.166 1.166 28 H 0.117 0.883 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.252 0.748 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.166 0.834 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.125 0.875 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.657 -12.438 16.735 26.687 hybrid contribution 0.464 -0.873 -0.710 1.217 sum -16.193 -13.311 16.025 26.385 Atomic orbital electron populations 1.20214 0.84356 1.03924 1.04178 1.24033 1.00200 0.88607 1.01528 1.73778 0.90053 1.25795 1.22039 1.84742 1.21487 1.24422 1.68224 1.26328 1.02232 0.82757 1.01188 1.21374 0.91935 0.98024 1.08732 1.20091 1.00539 0.87134 0.90815 1.60934 1.47698 1.03230 1.18925 1.22452 0.99831 0.89585 0.95774 1.21774 0.88348 0.97679 0.88952 0.92259 1.22651 1.03079 0.91094 0.98330 1.22748 0.95580 1.00082 0.97613 1.22535 0.98723 0.83816 0.98370 1.48281 1.34948 1.05979 1.45486 1.19140 0.83108 0.82804 0.81628 1.90618 1.61709 1.37596 1.47780 1.23198 1.00145 0.99661 1.02180 1.84660 1.42074 1.08775 1.58240 1.22518 1.18411 0.97642 1.29019 0.92361 1.25465 0.93725 1.02078 0.94219 1.70016 1.21403 1.31488 1.32709 0.85918 0.81356 0.80031 0.79326 1.18785 1.18369 1.16629 0.88337 0.91064 0.89419 0.74761 0.92893 0.89665 0.83445 0.92715 0.90826 0.88905 0.88192 0.90746 0.87509 0.91429 0.90788 0.88793 0.88821 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.45 10.39 71.24 0.74 -0.71 16 2 C 0.02 0.46 7.33 43.58 0.32 0.78 16 3 N -0.41 -14.14 12.07 -49.55 -0.60 -14.74 16 4 O 0.07 2.42 11.20 71.64 0.80 3.22 16 5 C -0.04 -1.22 12.26 67.18 0.82 -0.40 16 6 C -0.20 -5.28 5.84 -19.73 -0.12 -5.39 16 7 C 0.14 2.98 6.17 85.56 0.53 3.50 16 8 N -0.67 -16.13 3.28 -517.95 -1.70 -17.83 16 9 C 0.05 0.90 5.27 86.30 0.46 1.35 16 10 C 0.14 2.37 3.28 45.34 0.15 2.52 16 11 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 12 C -0.11 -1.05 6.48 31.78 0.21 -0.84 16 13 C -0.12 -1.28 7.08 31.98 0.23 -1.05 16 14 C 0.09 1.56 6.69 86.85 0.58 2.14 16 15 N -0.61 -14.67 3.07 -788.05 -2.42 -17.08 16 16 C 0.55 18.79 7.44 87.66 0.65 19.44 16 17 O -0.50 -19.81 12.00 -3.02 -0.04 -19.84 16 18 C -0.10 -3.99 5.16 71.24 0.37 -3.63 16 19 S -0.16 -8.48 18.55 -56.49 -1.05 -9.52 16 20 C -0.53 -31.54 10.04 67.95 0.68 -30.86 16 21 H 0.06 3.68 8.03 -2.91 -0.02 3.66 16 22 C 0.05 3.03 5.50 84.86 0.47 3.50 16 23 N -0.92 -57.02 13.97 21.65 0.30 -56.72 16 24 Si 0.91 46.86 27.74 68.60 1.90 48.76 16 25 H -0.26 -13.26 7.11 99.48 0.71 -12.55 16 26 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 27 H -0.24 -12.61 6.74 99.48 0.67 -11.94 16 28 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.09 1.59 7.75 -2.39 -0.02 1.57 16 31 H 0.24 5.08 8.06 -2.91 -0.02 5.06 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.34 9.39 7.02 -89.69 -0.63 8.76 16 35 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.07 1.22 8.07 -2.39 -0.02 1.20 16 37 H 0.09 0.64 7.81 -2.38 -0.02 0.62 16 38 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.07 1.32 7.48 -2.39 -0.02 1.30 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 44 H 0.09 3.58 7.85 -2.39 -0.02 3.56 16 45 H 0.28 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -78.33 381.70 3.62 -74.71 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.33 Total: 18.70 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: 6.08 Total: -9.65 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -4.41 Total: -106.37 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.77 Total: -16.62 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.90 Total: 48.76 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.05 Total: -9.52 kcal Total: -78.33 3.62 -74.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324117291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.297 kcal (2) G-P(sol) polarization free energy of solvation -78.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds