Wall clock time and date at job start Tue Mar 31 2020 22:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35450 * 128.00726 * 2 1 4 4 O 1.34040 * 106.44654 * 180.02562 * 3 2 1 5 5 N 1.20923 * 111.56542 * 359.70717 * 4 3 2 6 6 C 1.30177 * 111.60432 * 0.48441 * 5 4 3 7 7 C 1.50702 * 126.80492 * 179.79203 * 6 5 4 8 8 N 1.46892 * 109.47311 * 269.69138 * 7 6 5 9 9 C 1.46907 * 111.00056 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47046 * 179.97438 * 9 8 7 11 11 H 1.09003 * 110.00075 * 295.35440 * 10 9 8 12 12 C 1.54342 * 109.99099 * 174.32013 * 10 9 8 13 13 C 1.55152 * 103.01802 * 218.66707 * 12 10 9 14 14 C 1.54908 * 101.58912 * 35.30387 * 13 12 10 15 15 N 1.47024 * 109.88691 * 56.45344 * 10 9 8 16 16 C 1.34780 * 125.64345 * 298.39361 * 15 10 9 17 17 O 1.21279 * 120.00426 * 359.71764 * 16 15 10 18 18 C 1.50703 * 119.99340 * 179.71126 * 16 15 10 19 19 S 1.81000 * 109.46640 * 180.02562 * 18 16 15 20 20 C 1.76204 * 100.00077 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99794 * 359.97438 * 20 19 18 22 22 C 1.38797 * 119.99960 * 180.02562 * 20 19 18 23 23 N 1.31633 * 120.00292 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99660 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47297 * 269.99524 * 24 22 20 26 26 H 1.48503 * 109.47261 * 149.99704 * 24 22 20 27 27 H 1.48500 * 109.47454 * 29.99697 * 24 22 20 28 28 H 1.09002 * 109.46881 * 269.96224 * 1 2 3 29 29 H 1.09007 * 109.47167 * 29.95405 * 1 2 3 30 30 H 1.08992 * 109.47426 * 149.95732 * 1 2 3 31 31 H 1.07998 * 126.78102 * 0.05367 * 3 2 1 32 32 H 1.08996 * 109.46914 * 149.68654 * 7 6 5 33 33 H 1.09004 * 109.46836 * 29.69092 * 7 6 5 34 34 H 1.00904 * 110.99892 * 303.95107 * 8 7 6 35 35 H 1.08995 * 109.47073 * 59.99825 * 9 8 7 36 36 H 1.08999 * 109.46645 * 299.99501 * 9 8 7 37 37 H 1.08994 * 110.84929 * 100.19468 * 12 10 9 38 38 H 1.08999 * 110.66323 * 337.04847 * 12 10 9 39 39 H 1.09003 * 111.00209 * 277.22677 * 13 12 10 40 40 H 1.09003 * 111.03554 * 153.40122 * 13 12 10 41 41 H 1.08989 * 110.36917 * 204.15021 * 14 13 12 42 42 H 1.09005 * 110.45526 * 81.87144 * 14 13 12 43 43 H 1.08997 * 109.46997 * 60.00690 * 18 16 15 44 44 H 1.08995 * 109.47631 * 299.99616 * 18 16 15 45 45 H 0.96998 * 119.99330 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3411 1.0673 0.0000 4 8 3.5877 0.5747 -0.0006 5 7 3.5878 -0.6345 0.0048 6 6 2.3775 -1.1140 -0.0005 7 6 1.9826 -2.5683 -0.0009 8 7 1.8538 -3.0405 -1.3859 9 6 1.4695 -4.4578 -1.4254 10 6 1.3448 -4.9121 -2.8810 11 1 0.5302 -4.3777 -3.3698 12 6 1.0815 -6.4317 -2.9388 13 6 1.9232 -6.8861 -4.1605 14 6 3.1521 -5.9487 -4.0576 15 7 2.6062 -4.6604 -3.5932 16 6 3.1726 -3.4525 -3.7846 17 8 2.6326 -2.4547 -3.3562 18 6 4.4772 -3.3419 -4.5310 19 16 4.9751 -1.6040 -4.6212 20 6 6.4833 -1.7640 -5.5181 21 1 6.8256 -2.7398 -5.8292 22 6 7.2319 -0.6359 -5.8237 23 7 6.8149 0.5536 -5.4441 24 14 8.8312 -0.8056 -6.7740 25 1 9.9558 -0.9892 -5.8216 26 1 9.0604 0.4203 -7.5802 27 1 8.7488 -1.9827 -7.6755 28 1 -0.3633 -0.0007 1.0277 29 1 -0.3634 0.8904 -0.5131 30 1 -0.3634 -0.8895 -0.5144 31 1 2.0577 2.1094 0.0008 32 1 1.0287 -2.6858 0.5133 33 1 2.7464 -3.1523 0.5126 34 1 1.1979 -2.4731 -1.9018 35 1 0.5122 -4.5889 -0.9210 36 1 2.2301 -5.0546 -0.9220 37 1 0.0234 -6.6362 -3.1019 38 1 1.4307 -6.9176 -2.0277 39 1 1.3816 -6.7195 -5.0917 40 1 2.2193 -7.9307 -4.0648 41 1 3.6227 -5.8316 -5.0337 42 1 3.8696 -6.3390 -3.3357 43 1 4.3536 -3.7375 -5.5391 44 1 5.2445 -3.9126 -4.0081 45 1 5.9847 0.6415 -4.9503 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324117393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:21 Heat of formation + Delta-G solvation = 43.358357 kcal Electronic energy + Delta-G solvation = -27852.372185 eV Core-core repulsion = 24000.095430 eV Total energy + Delta-G solvation = -3852.276755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.62733 -39.93421 -37.04008 -36.40184 -34.24108 -32.41699 -32.12809 -31.64595 -30.16332 -28.58683 -28.06743 -26.46738 -24.74241 -23.96589 -22.23825 -21.42671 -21.33366 -20.87645 -18.85891 -18.09614 -17.30056 -17.24543 -16.84346 -16.35791 -15.59804 -14.96813 -14.67857 -14.41602 -14.31300 -13.96810 -13.80122 -13.73335 -13.43947 -13.37325 -13.26929 -12.92785 -12.74103 -12.49244 -12.32086 -12.22221 -11.94971 -11.75516 -11.60563 -11.51446 -11.38639 -11.14947 -10.94081 -10.83838 -10.77280 -10.13004 -9.73790 -9.43821 -9.15885 -9.03686 -8.90782 -8.49706 -8.06905 -7.84399 -6.52079 -6.50578 -3.86677 1.78560 2.40982 3.00291 3.36224 3.40381 3.45143 3.53204 3.59237 3.67743 4.16498 4.33106 4.38482 4.40436 4.59774 4.67855 4.76209 4.95660 4.99395 5.11613 5.18621 5.22438 5.24418 5.32616 5.37340 5.40338 5.44089 5.49691 5.52530 5.63145 5.64445 5.65297 5.70468 5.73189 5.82340 5.88519 5.90393 6.01270 6.06847 6.19203 6.26829 6.59271 7.10571 7.62785 7.91500 8.02759 8.60809 8.61191 8.88243 9.38379 10.92162 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007935 B = 0.004628 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3527.725338 B = 6048.041036 C = 9119.539747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.204 4.204 3 C -0.067 4.067 4 O 0.108 5.892 5 N -0.334 5.334 6 C 0.025 3.975 7 C 0.139 3.861 8 N -0.648 5.648 9 C 0.051 3.949 10 C 0.142 3.858 11 H 0.069 0.931 12 C -0.125 4.125 13 C -0.131 4.131 14 C 0.100 3.900 15 N -0.618 5.618 16 C 0.549 3.451 17 O -0.476 6.476 18 C -0.121 4.121 19 S -0.111 6.111 20 C -0.606 4.606 21 H 0.063 0.937 22 C 0.035 3.965 23 N -0.886 5.886 24 Si 1.085 2.915 25 H -0.285 1.285 26 H -0.280 1.280 27 H -0.288 1.288 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.211 0.789 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.355 0.645 35 H 0.031 0.969 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.522 -11.559 10.148 22.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.209 4.209 3 C -0.148 4.148 4 O 0.040 5.960 5 N -0.035 5.035 6 C -0.135 4.135 7 C 0.009 3.991 8 N -0.285 5.285 9 C -0.079 4.079 10 C 0.038 3.962 11 H 0.087 0.913 12 C -0.164 4.164 13 C -0.169 4.169 14 C -0.023 4.023 15 N -0.357 5.357 16 C 0.336 3.664 17 O -0.346 6.346 18 C -0.272 4.272 19 S 0.116 5.884 20 C -0.754 4.754 21 H 0.081 0.919 22 C -0.175 4.175 23 N -0.521 5.521 24 Si 0.912 3.088 25 H -0.211 1.211 26 H -0.206 1.206 27 H -0.214 1.214 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.227 0.773 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.178 0.822 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.142 -9.763 10.071 19.918 hybrid contribution -2.161 -2.003 0.270 2.959 sum -16.302 -11.766 10.341 22.608 Atomic orbital electron populations 1.20009 0.87964 1.02933 1.01909 1.21224 0.98237 0.91998 1.09392 1.25676 0.83614 1.00923 1.04601 1.84884 1.28801 1.15734 1.66622 1.73892 1.22155 0.90907 1.16523 1.23141 0.88559 0.97647 1.04180 1.20085 0.99324 0.87832 0.91845 1.60892 1.55906 1.01772 1.09915 1.22432 0.98523 0.90869 0.96118 1.21472 0.87715 0.95207 0.91824 0.91316 1.22636 1.00774 0.93844 0.99115 1.22755 0.96318 0.99325 0.98546 1.22236 0.96101 0.83967 1.00021 1.48396 1.23607 1.05953 1.57700 1.19648 0.85710 0.81541 0.79504 1.90590 1.62898 1.34779 1.46313 1.23255 0.96725 1.05515 1.01704 1.84780 1.28588 1.00688 1.74350 1.23748 1.09129 0.98483 1.44081 0.91888 1.25995 1.03182 0.91398 0.96950 1.70753 1.23354 1.23644 1.34307 0.83317 0.73938 0.75655 0.75899 1.21117 1.20575 1.21390 0.91393 0.91079 0.91621 0.77273 0.94153 0.90222 0.82179 0.95135 0.91099 0.90247 0.90515 0.90623 0.90014 0.90674 0.91825 0.89905 0.89809 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.37 36.01 0.37 -0.30 16 2 C -0.20 -2.76 6.32 -104.42 -0.66 -3.42 16 3 C -0.07 -0.89 12.26 29.74 0.36 -0.53 16 4 O 0.11 1.91 11.20 17.18 0.19 2.10 16 5 N -0.33 -6.47 12.07 33.42 0.40 -6.07 16 6 C 0.02 0.40 6.84 -82.10 -0.56 -0.16 16 7 C 0.14 1.94 6.19 -4.98 -0.03 1.91 16 8 N -0.65 -9.77 3.31 -115.06 -0.38 -10.15 16 9 C 0.05 0.59 5.28 -3.82 -0.02 0.57 16 10 C 0.14 1.64 3.28 -66.94 -0.22 1.42 16 11 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 12 C -0.13 -0.98 6.48 -24.89 -0.16 -1.14 16 13 C -0.13 -1.05 7.09 -24.59 -0.17 -1.23 16 14 C 0.10 1.14 6.69 -2.53 -0.02 1.12 16 15 N -0.62 -9.03 3.06 -163.01 -0.50 -9.53 16 16 C 0.55 10.78 7.43 -10.98 -0.08 10.70 16 17 O -0.48 -10.48 12.02 5.56 0.07 -10.41 16 18 C -0.12 -2.66 5.16 36.01 0.19 -2.47 16 19 S -0.11 -3.12 19.60 -107.50 -2.11 -5.23 16 20 C -0.61 -18.27 9.50 30.94 0.29 -17.97 16 21 H 0.06 1.83 7.80 -52.49 -0.41 1.42 16 22 C 0.04 1.06 5.49 -17.43 -0.10 0.96 16 23 N -0.89 -28.50 13.67 55.49 0.76 -27.74 16 24 Si 1.09 25.99 29.92 -169.99 -5.09 20.90 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.21 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.36 5.68 7.38 -39.29 -0.29 5.39 16 35 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.54 7.79 -51.93 -0.40 0.13 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.87 7.48 -51.94 -0.39 0.48 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.08 1.72 7.85 -51.92 -0.41 1.32 16 44 H 0.08 1.81 8.14 -51.92 -0.42 1.39 16 45 H 0.28 9.17 7.12 -40.82 -0.29 8.88 16 LS Contribution 383.80 15.07 5.78 5.78 Total: -1.00 -37.77 383.80 -8.57 -46.34 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.90 Total: 4.54 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -0.80 Total: -10.54 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.28 Total: -53.49 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.26 Total: -8.31 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -5.09 Total: 20.90 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.11 Total: -5.23 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.77 -8.57 -46.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324117393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.699 kcal (2) G-P(sol) polarization free energy of solvation -37.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds