Wall clock time and date at job start Tue Mar 31 2020 22:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35450 * 128.00726 * 2 1 4 4 O 1.34040 * 106.44654 * 180.02562 * 3 2 1 5 5 N 1.20923 * 111.56542 * 359.70717 * 4 3 2 6 6 C 1.30177 * 111.60432 * 0.48441 * 5 4 3 7 7 C 1.50702 * 126.80492 * 179.79203 * 6 5 4 8 8 N 1.46892 * 109.47311 * 269.69138 * 7 6 5 9 9 C 1.46907 * 111.00056 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47046 * 179.97438 * 9 8 7 11 11 H 1.09003 * 110.00075 * 295.35440 * 10 9 8 12 12 C 1.54342 * 109.99099 * 174.32013 * 10 9 8 13 13 C 1.55152 * 103.01802 * 218.66707 * 12 10 9 14 14 C 1.54908 * 101.58912 * 35.30387 * 13 12 10 15 15 N 1.47024 * 109.88691 * 56.45344 * 10 9 8 16 16 C 1.34780 * 125.64345 * 298.39361 * 15 10 9 17 17 O 1.21279 * 120.00426 * 359.71764 * 16 15 10 18 18 C 1.50703 * 119.99340 * 179.71126 * 16 15 10 19 19 S 1.81000 * 109.46640 * 180.02562 * 18 16 15 20 20 C 1.76204 * 100.00077 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99794 * 359.97438 * 20 19 18 22 22 C 1.38797 * 119.99960 * 180.02562 * 20 19 18 23 23 N 1.31633 * 120.00292 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99660 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47297 * 269.99524 * 24 22 20 26 26 H 1.48503 * 109.47261 * 149.99704 * 24 22 20 27 27 H 1.48500 * 109.47454 * 29.99697 * 24 22 20 28 28 H 1.09002 * 109.46881 * 269.96224 * 1 2 3 29 29 H 1.09007 * 109.47167 * 29.95405 * 1 2 3 30 30 H 1.08992 * 109.47426 * 149.95732 * 1 2 3 31 31 H 1.07998 * 126.78102 * 0.05367 * 3 2 1 32 32 H 1.08996 * 109.46914 * 149.68654 * 7 6 5 33 33 H 1.09004 * 109.46836 * 29.69092 * 7 6 5 34 34 H 1.00904 * 110.99892 * 303.95107 * 8 7 6 35 35 H 1.08995 * 109.47073 * 59.99825 * 9 8 7 36 36 H 1.08999 * 109.46645 * 299.99501 * 9 8 7 37 37 H 1.08994 * 110.84929 * 100.19468 * 12 10 9 38 38 H 1.08999 * 110.66323 * 337.04847 * 12 10 9 39 39 H 1.09003 * 111.00209 * 277.22677 * 13 12 10 40 40 H 1.09003 * 111.03554 * 153.40122 * 13 12 10 41 41 H 1.08989 * 110.36917 * 204.15021 * 14 13 12 42 42 H 1.09005 * 110.45526 * 81.87144 * 14 13 12 43 43 H 1.08997 * 109.46997 * 60.00690 * 18 16 15 44 44 H 1.08995 * 109.47631 * 299.99616 * 18 16 15 45 45 H 0.96998 * 119.99330 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3411 1.0673 0.0000 4 8 3.5877 0.5747 -0.0006 5 7 3.5878 -0.6345 0.0048 6 6 2.3775 -1.1140 -0.0005 7 6 1.9826 -2.5683 -0.0009 8 7 1.8538 -3.0405 -1.3859 9 6 1.4695 -4.4578 -1.4254 10 6 1.3448 -4.9121 -2.8810 11 1 0.5302 -4.3777 -3.3698 12 6 1.0815 -6.4317 -2.9388 13 6 1.9232 -6.8861 -4.1605 14 6 3.1521 -5.9487 -4.0576 15 7 2.6062 -4.6604 -3.5932 16 6 3.1726 -3.4525 -3.7846 17 8 2.6326 -2.4547 -3.3562 18 6 4.4772 -3.3419 -4.5310 19 16 4.9751 -1.6040 -4.6212 20 6 6.4833 -1.7640 -5.5181 21 1 6.8256 -2.7398 -5.8292 22 6 7.2319 -0.6359 -5.8237 23 7 6.8149 0.5536 -5.4441 24 14 8.8312 -0.8056 -6.7740 25 1 9.9558 -0.9892 -5.8216 26 1 9.0604 0.4203 -7.5802 27 1 8.7488 -1.9827 -7.6755 28 1 -0.3633 -0.0007 1.0277 29 1 -0.3634 0.8904 -0.5131 30 1 -0.3634 -0.8895 -0.5144 31 1 2.0577 2.1094 0.0008 32 1 1.0287 -2.6858 0.5133 33 1 2.7464 -3.1523 0.5126 34 1 1.1979 -2.4731 -1.9018 35 1 0.5122 -4.5889 -0.9210 36 1 2.2301 -5.0546 -0.9220 37 1 0.0234 -6.6362 -3.1019 38 1 1.4307 -6.9176 -2.0277 39 1 1.3816 -6.7195 -5.0917 40 1 2.2193 -7.9307 -4.0648 41 1 3.6227 -5.8316 -5.0337 42 1 3.8696 -6.3390 -3.3357 43 1 4.3536 -3.7375 -5.5391 44 1 5.2445 -3.9126 -4.0081 45 1 5.9847 0.6415 -4.9503 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324117393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:20 Heat of formation + Delta-G solvation = 17.559275 kcal Electronic energy + Delta-G solvation = -27853.490917 eV Core-core repulsion = 24000.095430 eV Total energy + Delta-G solvation = -3853.395487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.84326 -41.09890 -38.34086 -37.47296 -35.28498 -34.74647 -33.27554 -32.81909 -31.18098 -30.12785 -28.98494 -27.47555 -27.07699 -24.99236 -23.34345 -22.54214 -22.29612 -21.86637 -20.56527 -19.75555 -18.53968 -18.48105 -18.09849 -17.50245 -16.85327 -16.61384 -15.98554 -15.78248 -15.69575 -15.37815 -15.19175 -14.89831 -14.57962 -14.38362 -14.33522 -14.08811 -14.01257 -13.83937 -13.75927 -13.44232 -13.16199 -13.12827 -12.91150 -12.75931 -12.56589 -12.13166 -11.99777 -11.95674 -11.89506 -11.60255 -11.51795 -11.11258 -10.95412 -10.54774 -10.29131 -10.22831 -9.64347 -8.94088 -8.93700 -8.82086 -6.25914 0.66410 1.24238 1.27630 1.48913 1.58548 1.77080 1.83771 2.20267 2.33776 2.50105 3.01465 3.12672 3.20253 3.35873 3.58185 3.62878 3.75612 3.90623 4.01903 4.03327 4.14321 4.19041 4.24803 4.28324 4.33600 4.35420 4.50770 4.57437 4.64309 4.70274 4.76737 4.81448 4.82915 4.88831 4.95340 4.97172 5.08335 5.13555 5.34442 5.36002 5.54680 5.61401 6.11705 6.13592 6.50668 6.59933 7.06084 7.42193 7.43660 8.49446 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007935 B = 0.004628 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3527.725338 B = 6048.041036 C = 9119.539747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.208 4.208 3 C -0.069 4.069 4 O 0.076 5.924 5 N -0.392 5.392 6 C 0.013 3.987 7 C 0.143 3.857 8 N -0.673 5.673 9 C 0.054 3.946 10 C 0.136 3.864 11 H 0.063 0.937 12 C -0.112 4.112 13 C -0.119 4.119 14 C 0.087 3.913 15 N -0.612 5.612 16 C 0.545 3.455 17 O -0.507 6.507 18 C -0.099 4.099 19 S -0.182 6.182 20 C -0.617 4.617 21 H 0.067 0.933 22 C -0.018 4.018 23 N -0.911 5.911 24 Si 1.138 2.862 25 H -0.269 1.269 26 H -0.275 1.275 27 H -0.263 1.263 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.253 0.747 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.347 0.653 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.109 0.891 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.215 -14.194 10.042 25.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.213 4.213 3 C -0.149 4.149 4 O 0.012 5.988 5 N -0.098 5.098 6 C -0.146 4.146 7 C 0.014 3.986 8 N -0.310 5.310 9 C -0.076 4.076 10 C 0.032 3.968 11 H 0.081 0.919 12 C -0.151 4.151 13 C -0.157 4.157 14 C -0.035 4.035 15 N -0.348 5.348 16 C 0.331 3.669 17 O -0.380 6.380 18 C -0.251 4.251 19 S 0.045 5.955 20 C -0.765 4.765 21 H 0.086 0.914 22 C -0.221 4.221 23 N -0.547 5.547 24 Si 0.956 3.044 25 H -0.195 1.195 26 H -0.200 1.200 27 H -0.187 1.187 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.269 0.731 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.169 0.831 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.128 0.872 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.103 0.897 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.873 -12.450 9.986 22.509 hybrid contribution -1.752 -1.277 0.342 2.195 sum -17.625 -13.727 10.328 24.611 Atomic orbital electron populations 1.20130 0.84875 1.03764 1.03591 1.21759 1.00179 0.90808 1.08506 1.26580 0.82228 1.02946 1.03167 1.84793 1.30974 1.15454 1.67567 1.73872 1.24421 0.91895 1.19578 1.23774 0.88468 0.99478 1.02900 1.20120 1.00311 0.86389 0.91797 1.60772 1.56577 1.03383 1.10272 1.22480 0.99862 0.88807 0.96445 1.21803 0.85676 0.98104 0.91186 0.91887 1.22656 1.02370 0.90383 0.99646 1.22747 0.94358 0.99795 0.98818 1.22555 0.98089 0.83142 0.99743 1.48300 1.24374 1.05334 1.56822 1.19198 0.85044 0.83037 0.79632 1.90591 1.63430 1.36343 1.47648 1.23140 0.98591 1.00306 1.03039 1.84957 1.28885 1.07098 1.74527 1.24075 1.09596 0.98884 1.43903 0.91435 1.27832 1.06562 0.90642 0.97074 1.70881 1.23059 1.24932 1.35779 0.82713 0.69734 0.76758 0.75239 1.19451 1.19984 1.18734 0.89124 0.89608 0.91419 0.73140 0.90909 0.91471 0.83088 0.91992 0.91464 0.87675 0.89057 0.90402 0.87218 0.91299 0.91223 0.88782 0.89679 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 10.37 71.24 0.74 -0.40 16 2 C -0.21 -5.60 6.32 -19.74 -0.12 -5.73 16 3 C -0.07 -1.87 12.26 67.18 0.82 -1.05 16 4 O 0.08 2.89 11.20 71.63 0.80 3.69 16 5 N -0.39 -16.25 12.07 -49.55 -0.60 -16.85 16 6 C 0.01 0.45 6.84 43.58 0.30 0.75 16 7 C 0.14 4.02 6.19 85.56 0.53 4.55 16 8 N -0.67 -20.28 3.31 -517.95 -1.71 -21.99 16 9 C 0.05 1.14 5.28 86.30 0.46 1.60 16 10 C 0.14 2.82 3.28 45.35 0.15 2.97 16 11 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 12 C -0.11 -1.28 6.48 31.79 0.21 -1.07 16 13 C -0.12 -1.45 7.09 31.98 0.23 -1.22 16 14 C 0.09 1.80 6.69 86.86 0.58 2.38 16 15 N -0.61 -17.26 3.06 -788.02 -2.41 -19.68 16 16 C 0.54 21.79 7.43 87.66 0.65 22.44 16 17 O -0.51 -23.14 12.02 -3.03 -0.04 -23.18 16 18 C -0.10 -4.47 5.16 71.24 0.37 -4.10 16 19 S -0.18 -10.72 19.60 -56.49 -1.11 -11.83 16 20 C -0.62 -38.01 9.50 67.95 0.65 -37.36 16 21 H 0.07 3.96 7.80 -2.91 -0.02 3.94 16 22 C -0.02 -1.10 5.49 84.86 0.47 -0.64 16 23 N -0.91 -60.46 13.67 21.65 0.30 -60.17 16 24 Si 1.14 52.03 29.92 68.60 2.05 54.09 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 27 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 28 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.25 4.10 8.06 -2.91 -0.02 4.08 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.35 11.22 7.38 -89.69 -0.66 10.56 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 36 H 0.07 1.49 8.06 -2.39 -0.02 1.47 16 37 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.09 0.84 7.79 -2.39 -0.02 0.82 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.07 1.50 7.48 -2.39 -0.02 1.49 16 42 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 43 H 0.09 3.96 7.85 -2.40 -0.02 3.94 16 44 H 0.08 3.76 8.14 -2.40 -0.02 3.74 16 45 H 0.26 17.98 7.12 -92.71 -0.66 17.32 16 Total: -1.00 -88.63 383.80 3.74 -84.89 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.44 Total: 27.89 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 6.01 Total: -16.88 kcal Atomic # 7 Polarization: -114.25 SS G_CDS: -4.43 Total: -118.68 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: 0.77 Total: -19.49 kcal Atomic # 14 Polarization: 52.03 SS G_CDS: 2.05 Total: 54.09 kcal Atomic # 16 Polarization: -10.72 SS G_CDS: -1.11 Total: -11.83 kcal Total: -88.63 3.74 -84.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324117393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.453 kcal (2) G-P(sol) polarization free energy of solvation -88.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds