Wall clock time and date at job start Tue Mar 31 2020 22:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.33635 * 122.75326 * 2 1 4 4 S 1.76191 * 107.93181 * 179.75956 * 3 2 1 5 5 C 1.70981 * 90.27956 * 0.28272 * 4 3 2 6 6 C 1.50705 * 124.91861 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.46785 * 269.69650 * 6 5 4 8 8 C 1.50705 * 109.46785 * 180.02562 * 7 6 5 9 9 O 1.21284 * 120.00023 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99988 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99880 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47155 * 179.97438 * 11 10 8 13 13 O 1.42906 * 110.88399 * 67.42795 * 12 11 10 14 14 C 1.55155 * 111.00688 * 191.34773 * 12 11 10 15 15 C 1.54330 * 102.94292 * 153.57723 * 14 12 11 16 16 N 1.47026 * 107.26840 * 337.81024 * 15 14 12 17 17 C 1.36935 * 125.64362 * 178.90400 * 16 15 14 18 18 H 1.08001 * 119.99939 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00563 * 0.02562 * 17 16 15 20 20 N 1.31620 * 119.99425 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00494 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46916 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47340 * 119.99904 * 21 19 17 24 24 H 1.48502 * 109.47284 * 240.00100 * 21 19 17 25 25 C 1.47420 * 108.70428 * 358.94103 * 16 15 14 26 26 N 1.29028 * 110.16781 * 359.70880 * 5 4 3 27 27 H 1.09004 * 109.47216 * 270.00138 * 1 2 3 28 28 H 1.09002 * 109.47258 * 29.99537 * 1 2 3 29 29 H 1.09000 * 109.47529 * 150.00005 * 1 2 3 30 30 H 1.08006 * 126.03253 * 359.97438 * 3 2 1 31 31 H 1.08999 * 109.46911 * 149.69629 * 6 5 4 32 32 H 1.08999 * 109.46927 * 29.69726 * 6 5 4 33 33 H 1.08999 * 109.47413 * 60.00286 * 7 6 5 34 34 H 1.08999 * 109.47450 * 299.99755 * 7 6 5 35 35 H 0.96999 * 119.99796 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.47314 * 59.99654 * 11 10 8 37 37 H 1.08999 * 109.47098 * 299.99930 * 11 10 8 38 38 H 0.96700 * 113.99958 * 297.57278 * 13 12 11 39 39 H 1.08998 * 110.71769 * 35.21845 * 14 12 11 40 40 H 1.08991 * 110.72382 * 271.94241 * 14 12 11 41 41 H 1.08998 * 109.88224 * 218.39343 * 15 14 12 42 42 H 1.08998 * 109.88221 * 97.22736 * 15 14 12 43 43 H 0.97001 * 119.99700 * 179.97438 * 20 19 17 44 44 H 1.08997 * 110.36858 * 142.96748 * 25 16 15 45 45 H 1.08997 * 110.36396 * 265.17736 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2299 1.1239 0.0000 4 16 3.9332 0.6732 0.0070 5 6 3.5039 -0.9818 0.0008 6 6 4.4835 -2.1271 0.0021 7 6 4.8154 -2.5158 -1.4400 8 6 5.7944 -3.6615 -1.4387 9 8 6.1876 -4.1221 -0.3879 10 7 6.2331 -4.1743 -2.6053 11 6 7.1853 -5.2877 -2.6040 12 6 7.5172 -5.6766 -4.0461 13 8 8.2507 -4.6377 -4.6979 14 6 8.2914 -7.0203 -4.0957 15 6 7.9394 -7.5706 -5.4939 16 7 6.6854 -6.9275 -5.9131 17 6 6.0452 -7.1295 -7.1066 18 1 5.1249 -6.6064 -7.3209 19 6 6.5789 -8.0064 -8.0409 20 7 7.7001 -8.6442 -7.7794 21 14 5.7059 -8.2813 -9.6693 22 1 4.4748 -7.4522 -9.7170 23 1 6.6066 -7.8956 -10.7851 24 1 5.3418 -9.7151 -9.7999 25 6 6.2321 -6.0286 -4.8361 26 7 2.2199 -1.1084 0.0005 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 1.8391 2.1308 -0.0004 31 1 4.0431 -2.9813 0.5165 32 1 5.3958 -1.8243 0.5160 33 1 5.2558 -1.6617 -1.9544 34 1 3.9031 -2.8186 -1.9539 35 1 5.9184 -3.8062 -3.4457 36 1 6.7448 -6.1420 -2.0899 37 1 8.0975 -4.9851 -2.0898 38 1 7.7662 -3.8046 -4.7775 39 1 7.9408 -7.6963 -3.3158 40 1 9.3643 -6.8507 -4.0069 41 1 7.8031 -8.6509 -5.4435 42 1 8.7343 -7.3276 -6.1988 43 1 8.0729 -9.2573 -8.4322 44 1 5.7864 -5.1273 -5.2567 45 1 5.5167 -6.5395 -4.1917 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325110860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:55 Heat of formation + Delta-G solvation = -22.554228 kcal Electronic energy + Delta-G solvation = -26423.079428 eV Core-core repulsion = 22567.944488 eV Total energy + Delta-G solvation = -3855.134939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.34193 -39.89451 -38.49150 -35.14085 -34.53964 -34.17879 -32.13405 -31.45826 -29.67451 -28.45411 -27.96263 -26.53697 -25.40755 -23.57278 -22.36939 -20.78769 -20.07597 -20.06077 -19.82282 -18.07887 -17.54213 -16.92634 -16.34734 -15.99754 -15.75737 -15.34410 -15.15011 -14.71784 -14.65784 -14.20402 -14.05450 -13.75815 -13.55799 -13.31631 -13.11743 -13.04015 -12.81858 -12.71876 -12.26195 -12.19583 -11.94579 -11.72571 -11.66926 -11.47411 -11.01269 -10.91491 -10.72382 -10.39879 -10.25810 -10.10648 -9.99345 -9.88605 -9.77490 -9.72785 -9.43637 -9.12510 -9.04368 -8.61274 -6.85516 -5.73427 -3.07223 0.32907 1.00601 1.39163 2.39980 2.53169 3.05089 3.38393 3.43290 3.46198 3.70744 4.38366 4.45575 4.48864 4.61147 4.72609 4.74707 4.81367 4.88203 4.98940 5.12048 5.18229 5.20809 5.29807 5.35102 5.41071 5.49874 5.60719 5.64328 5.69606 5.82657 5.89651 5.94966 6.15448 6.30560 6.33055 6.41607 6.53062 6.58875 7.36367 7.40897 7.51870 7.62561 7.81936 7.97556 8.10202 8.23281 9.18798 9.78915 10.43911 11.38317 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015601 B = 0.002086 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.293545 B =13418.529614 C =14600.679034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.068 3.932 3 C -0.268 4.268 4 S 0.120 5.880 5 C 0.058 3.942 6 C -0.028 4.028 7 C -0.136 4.136 8 C 0.516 3.484 9 O -0.542 6.542 10 N -0.726 5.726 11 C 0.104 3.896 12 C 0.101 3.899 13 O -0.537 6.537 14 C -0.128 4.128 15 C 0.181 3.819 16 N -0.599 5.599 17 C -0.230 4.230 18 H 0.077 0.923 19 C -0.007 4.007 20 N -0.919 5.919 21 Si 0.913 3.087 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.117 3.883 26 N -0.469 5.469 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.176 0.824 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.400 0.600 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.364 0.636 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.044 0.956 42 H 0.051 0.949 43 H 0.252 0.748 44 H 0.037 0.963 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.398 19.873 16.551 27.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.064 4.064 3 C -0.406 4.406 4 S 0.375 5.625 5 C -0.220 4.220 6 C -0.069 4.069 7 C -0.177 4.177 8 C 0.302 3.698 9 O -0.419 6.419 10 N -0.377 5.377 11 C -0.020 4.020 12 C 0.059 3.941 13 O -0.341 6.341 14 C -0.167 4.167 15 C 0.057 3.943 16 N -0.325 5.325 17 C -0.358 4.358 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.567 5.567 21 Si 0.743 3.257 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.217 1.217 25 C -0.010 4.010 26 N -0.184 5.184 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.193 0.807 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.235 0.765 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.210 0.790 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.883 18.948 17.082 26.423 hybrid contribution -1.964 0.532 -1.324 2.428 sum -8.848 19.480 15.758 26.572 Atomic orbital electron populations 1.20376 0.87037 1.03504 1.03014 1.20356 0.98374 0.86481 1.01166 1.26822 0.95169 1.03998 1.14659 1.84068 1.07346 1.03099 1.67994 1.27066 0.94037 0.98278 1.02659 1.19998 0.95898 0.94119 0.96922 1.21645 1.00123 0.97876 0.98096 1.20434 0.81636 0.83934 0.83777 1.90717 1.58373 1.61708 1.31122 1.46023 1.46789 1.36309 1.08628 1.22056 0.92623 0.89357 0.97962 1.22706 0.93984 0.89072 0.88320 1.86633 1.43759 1.22763 1.80967 1.22913 0.99862 0.92531 1.01367 1.21147 0.88683 0.95822 0.88693 1.44356 1.24960 1.48442 1.14712 1.19062 1.04394 1.21241 0.91128 0.90476 1.24815 0.97530 0.99316 0.98725 1.69973 1.20314 1.31421 1.34942 0.86034 0.78500 0.77583 0.83548 1.20542 1.21714 1.21728 1.22129 0.93407 0.94334 0.91171 1.66153 1.04519 1.31620 1.16142 0.90601 0.90696 0.90393 0.80668 0.87735 0.88637 0.88514 0.87948 0.76497 0.90382 0.90709 0.78994 0.90907 0.90920 0.93758 0.93110 0.93734 0.94469 0.95550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.31 36.00 0.37 -0.13 16 2 C 0.07 0.61 6.74 -84.23 -0.57 0.04 16 3 C -0.27 -1.99 11.13 29.12 0.32 -1.67 16 4 S 0.12 0.90 23.18 -107.50 -2.49 -1.59 16 5 C 0.06 0.54 6.64 -13.45 -0.09 0.45 16 6 C -0.03 -0.25 5.09 -27.88 -0.14 -0.39 16 7 C -0.14 -1.14 5.68 -27.88 -0.16 -1.30 16 8 C 0.52 5.99 7.83 -10.98 -0.09 5.91 16 9 O -0.54 -8.23 15.98 5.55 0.09 -8.14 16 10 N -0.73 -8.19 5.19 -60.29 -0.31 -8.50 16 11 C 0.10 1.43 4.97 -4.04 -0.02 1.41 16 12 C 0.10 1.67 0.95 -88.47 -0.08 1.59 16 13 O -0.54 -8.99 13.18 -35.23 -0.46 -9.45 16 14 C -0.13 -2.38 6.16 -24.89 -0.15 -2.53 16 15 C 0.18 4.41 5.37 -3.06 -0.02 4.39 16 16 N -0.60 -15.03 3.39 -170.08 -0.58 -15.61 16 17 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.63 16 19 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 20 N -0.92 -27.05 10.31 55.49 0.57 -26.48 16 21 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 C 0.12 2.25 5.74 -2.53 -0.01 2.23 16 26 N -0.47 -5.07 10.53 -8.06 -0.08 -5.16 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.18 0.84 8.06 -52.48 -0.42 0.42 16 31 H 0.10 1.07 8.10 -51.93 -0.42 0.64 16 32 H 0.10 0.80 8.10 -51.93 -0.42 0.38 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.40 3.75 7.31 -40.82 -0.30 3.45 16 36 H 0.08 1.13 8.00 -51.93 -0.42 0.71 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.36 4.54 8.57 45.56 0.39 4.93 16 39 H 0.07 1.22 7.94 -51.93 -0.41 0.81 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.04 1.18 7.51 -51.93 -0.39 0.79 16 42 H 0.05 1.40 7.38 -51.93 -0.38 1.01 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.04 0.66 7.80 -51.93 -0.41 0.26 16 45 H 0.03 0.52 8.04 -51.93 -0.42 0.10 16 LS Contribution 384.94 15.07 5.80 5.80 Total: -1.00 -34.78 384.94 -9.48 -44.26 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -6.10 Total: 4.67 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -0.89 Total: 3.20 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.40 Total: -55.74 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.38 Total: -17.59 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.49 Total: -1.59 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.78 -9.48 -44.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325110860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.703 kcal (2) G-P(sol) polarization free energy of solvation -34.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds