Wall clock time and date at job start Tue Mar 31 2020 22:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.33635 * 122.75326 * 2 1 4 4 S 1.76191 * 107.93181 * 179.75956 * 3 2 1 5 5 C 1.70981 * 90.27956 * 0.28272 * 4 3 2 6 6 C 1.50705 * 124.91861 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.46785 * 269.69650 * 6 5 4 8 8 C 1.50705 * 109.46785 * 180.02562 * 7 6 5 9 9 O 1.21284 * 120.00023 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99988 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99880 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47155 * 179.97438 * 11 10 8 13 13 O 1.42906 * 110.88399 * 67.42795 * 12 11 10 14 14 C 1.55155 * 111.00688 * 191.34773 * 12 11 10 15 15 C 1.54330 * 102.94292 * 153.57723 * 14 12 11 16 16 N 1.47026 * 107.26840 * 337.81024 * 15 14 12 17 17 C 1.36935 * 125.64362 * 178.90400 * 16 15 14 18 18 H 1.08001 * 119.99939 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00563 * 0.02562 * 17 16 15 20 20 N 1.31620 * 119.99425 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00494 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46916 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47340 * 119.99904 * 21 19 17 24 24 H 1.48502 * 109.47284 * 240.00100 * 21 19 17 25 25 C 1.47420 * 108.70428 * 358.94103 * 16 15 14 26 26 N 1.29028 * 110.16781 * 359.70880 * 5 4 3 27 27 H 1.09004 * 109.47216 * 270.00138 * 1 2 3 28 28 H 1.09002 * 109.47258 * 29.99537 * 1 2 3 29 29 H 1.09000 * 109.47529 * 150.00005 * 1 2 3 30 30 H 1.08006 * 126.03253 * 359.97438 * 3 2 1 31 31 H 1.08999 * 109.46911 * 149.69629 * 6 5 4 32 32 H 1.08999 * 109.46927 * 29.69726 * 6 5 4 33 33 H 1.08999 * 109.47413 * 60.00286 * 7 6 5 34 34 H 1.08999 * 109.47450 * 299.99755 * 7 6 5 35 35 H 0.96999 * 119.99796 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.47314 * 59.99654 * 11 10 8 37 37 H 1.08999 * 109.47098 * 299.99930 * 11 10 8 38 38 H 0.96700 * 113.99958 * 297.57278 * 13 12 11 39 39 H 1.08998 * 110.71769 * 35.21845 * 14 12 11 40 40 H 1.08991 * 110.72382 * 271.94241 * 14 12 11 41 41 H 1.08998 * 109.88224 * 218.39343 * 15 14 12 42 42 H 1.08998 * 109.88221 * 97.22736 * 15 14 12 43 43 H 0.97001 * 119.99700 * 179.97438 * 20 19 17 44 44 H 1.08997 * 110.36858 * 142.96748 * 25 16 15 45 45 H 1.08997 * 110.36396 * 265.17736 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2299 1.1239 0.0000 4 16 3.9332 0.6732 0.0070 5 6 3.5039 -0.9818 0.0008 6 6 4.4835 -2.1271 0.0021 7 6 4.8154 -2.5158 -1.4400 8 6 5.7944 -3.6615 -1.4387 9 8 6.1876 -4.1221 -0.3879 10 7 6.2331 -4.1743 -2.6053 11 6 7.1853 -5.2877 -2.6040 12 6 7.5172 -5.6766 -4.0461 13 8 8.2507 -4.6377 -4.6979 14 6 8.2914 -7.0203 -4.0957 15 6 7.9394 -7.5706 -5.4939 16 7 6.6854 -6.9275 -5.9131 17 6 6.0452 -7.1295 -7.1066 18 1 5.1249 -6.6064 -7.3209 19 6 6.5789 -8.0064 -8.0409 20 7 7.7001 -8.6442 -7.7794 21 14 5.7059 -8.2813 -9.6693 22 1 4.4748 -7.4522 -9.7170 23 1 6.6066 -7.8956 -10.7851 24 1 5.3418 -9.7151 -9.7999 25 6 6.2321 -6.0286 -4.8361 26 7 2.2199 -1.1084 0.0005 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 1.8391 2.1308 -0.0004 31 1 4.0431 -2.9813 0.5165 32 1 5.3958 -1.8243 0.5160 33 1 5.2558 -1.6617 -1.9544 34 1 3.9031 -2.8186 -1.9539 35 1 5.9184 -3.8062 -3.4457 36 1 6.7448 -6.1420 -2.0899 37 1 8.0975 -4.9851 -2.0898 38 1 7.7662 -3.8046 -4.7775 39 1 7.9408 -7.6963 -3.3158 40 1 9.3643 -6.8507 -4.0069 41 1 7.8031 -8.6509 -5.4435 42 1 8.7343 -7.3276 -6.1988 43 1 8.0729 -9.2573 -8.4322 44 1 5.7864 -5.1273 -5.2567 45 1 5.5167 -6.5395 -4.1917 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325110860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:54 Heat of formation + Delta-G solvation = -49.100335 kcal Electronic energy + Delta-G solvation = -26424.230553 eV Core-core repulsion = 22567.944488 eV Total energy + Delta-G solvation = -3856.286065 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.17751 -40.77003 -39.84880 -36.75299 -35.38127 -35.16566 -33.98951 -32.14940 -31.36072 -29.83289 -28.54423 -27.77153 -26.80727 -25.06366 -23.14766 -22.24786 -21.39723 -21.19458 -20.67138 -18.98881 -18.69711 -18.41938 -17.50842 -16.89229 -16.77970 -16.71696 -16.10721 -15.93848 -15.85041 -15.58614 -15.30420 -14.89207 -14.68784 -14.29218 -14.07791 -13.91328 -13.85653 -13.65428 -13.40117 -13.26153 -13.22262 -12.91311 -12.87234 -12.79653 -12.33762 -12.21466 -12.15323 -12.08121 -11.97754 -11.80388 -11.71950 -11.01740 -10.85012 -10.69857 -10.60932 -10.36814 -10.13850 -9.62524 -8.88953 -7.84933 -5.20391 -0.27469 0.42489 0.80123 1.46061 1.47174 1.57242 1.62394 1.76193 2.13683 2.48983 3.08534 3.20128 3.34496 3.48679 3.62751 3.70356 3.93378 3.96332 3.99050 4.08871 4.18612 4.29739 4.40783 4.50304 4.55803 4.60667 4.68573 4.77000 4.78903 4.83297 4.84663 4.94420 4.98534 4.99470 5.05591 5.10123 5.34945 5.37510 5.44721 5.64108 5.76554 6.19023 6.47621 6.80482 6.85429 7.09332 7.20102 7.76785 8.40704 9.25986 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015601 B = 0.002086 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.293545 B =13418.529614 C =14600.679034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.043 3.957 3 C -0.263 4.263 4 S 0.151 5.849 5 C 0.039 3.961 6 C -0.025 4.025 7 C -0.125 4.125 8 C 0.518 3.482 9 O -0.579 6.579 10 N -0.718 5.718 11 C 0.120 3.880 12 C 0.122 3.878 13 O -0.553 6.553 14 C -0.122 4.122 15 C 0.189 3.811 16 N -0.622 5.622 17 C -0.239 4.239 18 H 0.086 0.914 19 C -0.070 4.070 20 N -0.953 5.953 21 Si 0.979 3.021 22 H -0.262 1.262 23 H -0.294 1.294 24 H -0.294 1.294 25 C 0.112 3.888 26 N -0.500 5.500 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.202 0.798 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.412 0.588 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.384 0.616 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.008 0.992 42 H 0.008 0.992 43 H 0.246 0.754 44 H 0.057 0.943 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.673 22.623 17.088 29.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 C -0.402 4.402 4 S 0.406 5.594 5 C -0.238 4.238 6 C -0.066 4.066 7 C -0.166 4.166 8 C 0.306 3.694 9 O -0.459 6.459 10 N -0.371 5.371 11 C -0.005 4.005 12 C 0.080 3.920 13 O -0.360 6.360 14 C -0.160 4.160 15 C 0.064 3.936 16 N -0.348 5.348 17 C -0.368 4.368 18 H 0.104 0.896 19 C -0.263 4.263 20 N -0.602 5.602 21 Si 0.808 3.192 22 H -0.186 1.186 23 H -0.221 1.221 24 H -0.221 1.221 25 C -0.014 4.014 26 N -0.216 5.216 27 H 0.100 0.900 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.219 0.781 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.142 0.858 34 H 0.127 0.873 35 H 0.249 0.751 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.233 0.767 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -8.196 21.752 17.627 29.173 hybrid contribution -1.586 -0.241 -1.447 2.160 sum -9.782 21.511 16.180 28.640 Atomic orbital electron populations 1.20437 0.85713 1.04032 1.03563 1.20754 0.99515 0.86546 1.02069 1.27208 0.95095 1.04875 1.12986 1.83918 1.07182 1.01229 1.67069 1.27057 0.93858 0.99402 1.03510 1.19916 0.95899 0.93617 0.97160 1.21609 0.99485 0.97375 0.98131 1.20918 0.81386 0.84083 0.82989 1.90710 1.59770 1.62959 1.32438 1.45903 1.46234 1.35587 1.09345 1.21721 0.93361 0.90097 0.95356 1.22377 0.91779 0.88330 0.89502 1.86600 1.44449 1.23810 1.81163 1.22798 1.00947 0.94147 0.98136 1.20836 0.87570 0.94135 0.91056 1.44651 1.25133 1.49613 1.15370 1.19502 1.04588 1.20581 0.92096 0.89582 1.25694 0.98525 0.99756 1.02341 1.70207 1.21948 1.32272 1.35752 0.84994 0.77867 0.77202 0.79164 1.18644 1.22100 1.22129 1.22362 0.94880 0.94014 0.90110 1.66160 1.05374 1.33123 1.16985 0.90027 0.88631 0.91391 0.78072 0.89622 0.88267 0.85826 0.87302 0.75108 0.90802 0.90376 0.76665 0.88849 0.89965 0.97393 0.97404 0.94507 0.92473 0.94901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.31 71.23 0.73 -0.14 16 2 C 0.04 0.70 6.74 41.52 0.28 0.98 16 3 C -0.26 -3.26 11.13 66.78 0.74 -2.52 16 4 S 0.15 1.93 23.18 -56.49 -1.31 0.62 16 5 C 0.04 0.68 6.64 88.52 0.59 1.27 16 6 C -0.02 -0.42 5.09 29.85 0.15 -0.26 16 7 C -0.12 -1.81 5.68 29.85 0.17 -1.64 16 8 C 0.52 10.95 7.83 87.66 0.69 11.64 16 9 O -0.58 -16.85 15.98 -3.04 -0.05 -16.90 16 10 N -0.72 -14.25 5.19 -463.06 -2.40 -16.65 16 11 C 0.12 3.00 4.97 86.38 0.43 3.43 16 12 C 0.12 3.81 0.95 -9.40 -0.01 3.80 16 13 O -0.55 -17.32 13.18 -148.98 -1.96 -19.28 16 14 C -0.12 -4.45 6.16 31.78 0.20 -4.25 16 15 C 0.19 9.49 5.37 86.73 0.47 9.95 16 16 N -0.62 -31.32 3.39 -692.00 -2.35 -33.67 16 17 C -0.24 -13.20 10.28 84.03 0.86 -12.34 16 18 H 0.09 4.48 7.83 -2.91 -0.02 4.45 16 19 C -0.07 -4.03 5.49 84.86 0.47 -3.56 16 20 N -0.95 -58.17 10.31 21.65 0.22 -57.95 16 21 Si 0.98 45.78 29.55 68.60 2.03 47.81 16 22 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 24 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 25 C 0.11 4.12 5.74 86.86 0.50 4.62 16 26 N -0.50 -10.35 10.53 -179.40 -1.89 -12.24 16 27 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.09 0.62 8.12 -2.39 -0.02 0.60 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.20 1.26 8.06 -2.91 -0.02 1.23 16 31 H 0.09 1.75 8.10 -2.39 -0.02 1.73 16 32 H 0.10 1.55 8.10 -2.39 -0.02 1.53 16 33 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.41 6.33 7.31 -92.71 -0.68 5.65 16 36 H 0.07 1.97 8.00 -2.39 -0.02 1.95 16 37 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.38 8.43 8.57 -74.06 -0.63 7.79 16 39 H 0.09 3.02 7.94 -2.39 -0.02 3.00 16 40 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 41 H 0.01 0.44 7.51 -2.39 -0.02 0.42 16 42 H 0.01 0.44 7.38 -2.39 -0.02 0.43 16 43 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 44 H 0.06 1.88 7.80 -2.39 -0.02 1.86 16 45 H 0.03 1.21 8.04 -2.39 -0.02 1.19 16 Total: -1.00 -77.67 384.94 -1.74 -79.42 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -0.29 Total: 17.87 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 6.26 Total: 10.98 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -6.42 Total: -120.51 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -2.01 Total: -36.18 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -1.31 Total: 0.62 kcal Total: -77.67 -1.74 -79.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325110860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.317 kcal (2) G-P(sol) polarization free energy of solvation -77.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds