Wall clock time and date at job start Tue Mar 31 2020 22:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31790 * 122.74898 * 2 1 4 4 C 1.29019 * 117.12361 * 180.02562 * 3 2 1 5 5 S 1.70978 * 110.16851 * 359.72373 * 4 3 2 6 6 C 1.33633 * 122.74940 * 180.02562 * 2 1 3 7 7 C 1.50692 * 126.03984 * 359.97438 * 6 2 1 8 8 C 1.53003 * 109.47196 * 89.99985 * 7 6 2 9 9 C 1.50701 * 109.47284 * 180.02562 * 8 7 6 10 10 O 1.21280 * 119.99837 * 0.02562 * 9 8 7 11 11 N 1.34767 * 120.00052 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00024 * 183.41533 * 11 9 8 13 13 C 1.52996 * 113.28403 * 306.25364 * 12 11 9 14 14 C 1.53003 * 109.47175 * 292.16874 * 13 12 11 15 15 O 1.42906 * 109.46827 * 184.79976 * 14 13 12 16 16 C 1.53502 * 114.20430 * 173.18968 * 12 11 9 17 17 N 1.47069 * 87.98456 * 220.14320 * 16 12 11 18 18 C 1.36937 * 136.06018 * 207.08092 * 17 16 12 19 19 H 1.07992 * 120.00010 * 354.42598 * 18 17 16 20 20 C 1.38816 * 119.99873 * 174.42561 * 18 17 16 21 21 N 1.31617 * 120.00006 * 182.15138 * 20 18 17 22 22 Si 1.86804 * 120.00003 * 2.42295 * 20 18 17 23 23 H 1.48495 * 109.46785 * 173.50347 * 22 20 18 24 24 H 1.48495 * 109.46956 * 293.50455 * 22 20 18 25 25 H 1.48498 * 109.47103 * 53.50470 * 22 20 18 26 26 C 1.47076 * 87.88177 * 27.34606 * 17 16 12 27 27 H 1.09003 * 109.46901 * 270.00316 * 1 2 3 28 28 H 1.09003 * 109.47299 * 29.99369 * 1 2 3 29 29 H 1.08996 * 109.47320 * 149.99980 * 1 2 3 30 30 H 1.08004 * 124.91941 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.47128 * 330.00462 * 7 6 2 32 32 H 1.08999 * 109.47442 * 210.00331 * 7 6 2 33 33 H 1.09004 * 109.46692 * 60.00210 * 8 7 6 34 34 H 1.08999 * 109.47208 * 300.00490 * 8 7 6 35 35 H 0.97001 * 120.00166 * 3.41360 * 11 9 8 36 36 H 1.09008 * 109.46875 * 52.16827 * 13 12 11 37 37 H 1.08997 * 109.47420 * 172.16498 * 13 12 11 38 38 H 1.08995 * 109.47108 * 304.80384 * 14 13 12 39 39 H 1.08999 * 109.47178 * 64.80424 * 14 13 12 40 40 H 0.96698 * 113.99483 * 179.97438 * 15 14 13 41 41 H 1.09004 * 113.46744 * 105.36840 * 16 12 11 42 42 H 1.08997 * 113.52348 * 334.93709 * 16 12 11 43 43 H 0.97003 * 119.99466 * 5.29355 * 21 20 18 44 44 H 1.08993 * 113.46811 * 87.43787 * 26 17 16 45 45 H 1.09001 * 113.46521 * 217.87564 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 -0.0005 5 16 3.9332 -0.6730 0.0067 6 6 2.2299 -1.1239 -0.0005 7 6 1.6847 -2.5287 -0.0006 8 6 1.4996 -3.0039 -1.4431 9 6 0.9538 -4.4086 -1.4432 10 8 0.7340 -4.9738 -0.3930 11 7 0.7100 -5.0367 -2.6104 12 6 0.1096 -6.3731 -2.6116 13 6 0.8720 -7.3794 -1.7475 14 6 2.2359 -7.6644 -2.3798 15 8 2.9019 -8.6862 -1.6351 16 6 -0.2612 -6.8951 -4.0067 17 7 -1.4925 -7.4427 -3.4176 18 6 -2.3420 -8.4801 -3.6958 19 1 -2.2028 -9.0666 -4.5918 20 6 -3.3821 -8.7777 -2.8260 21 7 -4.1728 -9.8009 -3.0714 22 14 -3.6643 -7.7215 -1.3113 23 1 -4.9179 -8.1464 -0.6381 24 1 -2.5216 -7.8816 -0.3764 25 1 -3.7776 -6.2970 -1.7152 26 6 -1.4136 -6.3817 -2.4022 27 1 -0.3633 0.0001 1.0277 28 1 -0.3634 0.8901 -0.5137 29 1 -0.3634 -0.8899 -0.5138 30 1 4.2060 1.8027 -0.0010 31 1 0.7237 -2.5456 0.5136 32 1 2.3831 -3.1896 0.5129 33 1 2.4607 -2.9871 -1.9573 34 1 0.8013 -2.3431 -1.9566 35 1 0.9319 -4.6040 -3.4497 36 1 1.0137 -6.9666 -0.7486 37 1 0.3020 -8.3060 -1.6802 38 1 2.0971 -7.9964 -3.4086 39 1 2.8382 -6.7560 -2.3692 40 1 3.7746 -8.9189 -1.9803 41 1 0.4196 -7.6607 -4.3788 42 1 -0.4425 -6.1033 -4.7335 43 1 -3.9834 -10.3924 -3.8165 44 1 -1.8987 -5.4539 -2.7052 45 1 -1.7145 -6.7099 -1.4072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329707905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:38 Heat of formation + Delta-G solvation = 17.094121 kcal Electronic energy + Delta-G solvation = -27442.830879 eV Core-core repulsion = 23589.415221 eV Total energy + Delta-G solvation = -3853.415658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.50133 -40.13985 -38.41764 -36.56369 -34.61697 -33.87584 -32.26984 -31.31358 -30.52863 -28.12502 -27.19803 -25.70885 -25.32431 -23.92551 -22.96507 -21.60454 -20.11285 -19.19102 -18.98312 -18.44042 -17.54335 -17.28967 -17.16250 -16.08765 -16.01518 -15.40386 -15.32353 -15.14165 -14.57059 -14.20940 -14.02321 -13.86121 -13.52853 -13.40395 -13.13853 -13.03436 -12.85227 -12.67541 -12.35370 -12.11638 -11.99331 -11.93258 -11.73582 -11.56443 -11.21093 -11.11182 -10.86499 -10.49615 -10.36076 -9.98318 -9.92319 -9.64004 -9.46997 -9.30793 -9.14554 -9.01155 -8.93573 -8.68185 -7.22737 -6.33874 -3.29168 0.36945 1.03483 1.42175 2.45400 2.69302 3.19267 3.45234 3.49001 3.67186 3.90926 4.25541 4.42237 4.58408 4.63668 4.66957 4.72137 4.82102 4.89803 4.97531 5.08437 5.24416 5.34207 5.35418 5.38013 5.45761 5.46348 5.56460 5.60960 5.67891 5.70612 5.76710 5.91603 6.01751 6.05366 6.21312 6.23848 6.30694 6.52371 6.68543 6.94718 6.99615 7.39351 7.62205 7.76386 8.19150 8.32947 8.92904 9.44505 10.27102 11.17459 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015172 B = 0.002877 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.084466 B = 9730.681356 C =10883.893800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.060 3.940 3 N -0.467 5.467 4 C 0.015 3.985 5 S 0.115 5.885 6 C -0.213 4.213 7 C -0.027 4.027 8 C -0.136 4.136 9 C 0.512 3.488 10 O -0.530 6.530 11 N -0.716 5.716 12 C 0.134 3.866 13 C -0.106 4.106 14 C 0.085 3.915 15 O -0.571 6.571 16 C 0.122 3.878 17 N -0.617 5.617 18 C -0.304 4.304 19 H 0.084 0.916 20 C -0.019 4.019 21 N -0.931 5.931 22 Si 1.068 2.932 23 H -0.294 1.294 24 H -0.287 1.287 25 H -0.291 1.291 26 C 0.097 3.903 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.198 0.802 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.399 0.601 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.044 0.956 39 H 0.035 0.965 40 H 0.372 0.628 41 H 0.054 0.946 42 H 0.042 0.958 43 H 0.261 0.739 44 H 0.045 0.955 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.394 20.155 2.633 28.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 N -0.181 5.181 4 C -0.283 4.283 5 S 0.369 5.631 6 C -0.334 4.334 7 C -0.067 4.067 8 C -0.177 4.177 9 C 0.298 3.702 10 O -0.406 6.406 11 N -0.367 5.367 12 C 0.047 3.953 13 C -0.144 4.144 14 C 0.007 3.993 15 O -0.376 6.376 16 C -0.005 4.005 17 N -0.345 5.345 18 C -0.430 4.430 19 H 0.102 0.898 20 C -0.218 4.218 21 N -0.573 5.573 22 Si 0.901 3.099 23 H -0.222 1.222 24 H -0.215 1.215 25 H -0.218 1.218 26 C -0.030 4.030 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.215 0.785 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.233 0.767 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.218 0.782 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 18.216 19.818 4.976 27.374 hybrid contribution 0.899 0.327 -2.361 2.548 sum 19.115 20.145 2.615 27.894 Atomic orbital electron populations 1.20411 0.86885 1.03554 1.03255 1.20293 0.98367 0.86105 1.02395 1.66188 1.05053 1.31678 1.15138 1.28267 0.95248 1.00013 1.04767 1.84090 1.07348 1.03668 1.68004 1.25770 0.94826 1.00770 1.11997 1.19781 1.02780 0.87970 0.96182 1.21699 1.03136 0.94348 0.98539 1.20518 0.77925 0.87713 0.84071 1.90697 1.51670 1.66996 1.31217 1.46025 1.64042 1.18322 1.08333 1.22445 0.93088 0.81122 0.98611 1.21441 0.93564 0.99287 1.00136 1.22101 0.93634 0.89158 0.94367 1.86532 1.34940 1.58652 1.57461 1.22633 0.89497 0.96054 0.92320 1.45755 1.27407 1.29478 1.31898 1.20099 1.09506 1.05414 1.07969 0.89798 1.25682 0.93842 1.00364 1.01917 1.70930 1.38103 1.15859 1.32362 0.83734 0.75307 0.74772 0.76063 1.22187 1.21539 1.21774 1.23162 0.91816 0.92572 0.95408 0.90460 0.90558 0.90367 0.78541 0.88521 0.89525 0.88950 0.88555 0.76726 0.88668 0.89080 0.93751 0.94634 0.78190 0.92800 0.94090 0.92848 0.93713 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 9.82 36.01 0.35 -0.32 16 2 C 0.06 0.59 6.74 -84.22 -0.57 0.02 16 3 N -0.47 -4.81 10.53 -11.90 -0.13 -4.93 16 4 C 0.02 0.12 12.23 51.58 0.63 0.75 16 5 S 0.12 0.85 23.22 -107.50 -2.50 -1.65 16 6 C -0.21 -1.92 5.84 -35.93 -0.21 -2.13 16 7 C -0.03 -0.25 4.44 -27.89 -0.12 -0.37 16 8 C -0.14 -1.18 5.68 -27.88 -0.16 -1.34 16 9 C 0.51 6.56 7.63 -10.99 -0.08 6.47 16 10 O -0.53 -8.97 13.74 5.56 0.08 -8.90 16 11 N -0.72 -9.02 5.24 -47.30 -0.25 -9.26 16 12 C 0.13 2.30 0.82 -131.56 -0.11 2.19 16 13 C -0.11 -1.94 4.91 -26.73 -0.13 -2.07 16 14 C 0.08 1.25 6.89 37.16 0.26 1.50 16 15 O -0.57 -8.55 13.66 -35.23 -0.48 -9.03 16 16 C 0.12 2.23 7.81 -8.50 -0.07 2.17 16 17 N -0.62 -14.88 3.46 -184.55 -0.64 -15.52 16 18 C -0.30 -8.67 11.09 -15.06 -0.17 -8.84 16 19 H 0.08 2.50 8.05 -52.49 -0.42 2.08 16 20 C -0.02 -0.56 5.50 -17.43 -0.10 -0.66 16 21 N -0.93 -29.47 13.70 55.49 0.76 -28.71 16 22 Si 1.07 27.72 25.05 -169.99 -4.26 23.46 16 23 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 24 H -0.29 -7.27 6.51 56.52 0.37 -6.90 16 25 H -0.29 -7.08 6.53 56.52 0.37 -6.71 16 26 C 0.10 2.09 5.30 -8.36 -0.04 2.05 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.59 7.18 -51.93 -0.37 0.22 16 30 H 0.20 0.85 8.06 -52.48 -0.42 0.43 16 31 H 0.10 0.97 7.39 -51.93 -0.38 0.59 16 32 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 0.71 7.98 -51.93 -0.41 0.30 16 35 H 0.40 3.63 8.68 -40.82 -0.35 3.27 16 36 H 0.09 1.87 5.79 -51.92 -0.30 1.57 16 37 H 0.09 1.99 7.94 -51.93 -0.41 1.58 16 38 H 0.04 0.62 6.63 -51.93 -0.34 0.28 16 39 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.37 3.49 9.12 45.56 0.42 3.91 16 41 H 0.05 0.95 6.70 -51.93 -0.35 0.60 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.26 8.13 8.73 -40.82 -0.36 7.77 16 44 H 0.05 0.94 8.07 -51.93 -0.42 0.52 16 45 H 0.06 1.43 3.99 -51.93 -0.21 1.22 16 LS Contribution 376.54 15.07 5.67 5.67 Total: -1.00 -36.76 376.54 -7.99 -44.75 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.74 Total: 4.70 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -0.52 Total: -0.59 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.25 Total: -58.42 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.40 Total: -17.93 kcal Atomic # 14 Polarization: 27.72 SS G_CDS: -4.26 Total: 23.46 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.50 Total: -1.65 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.76 -7.99 -44.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329707905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.844 kcal (2) G-P(sol) polarization free energy of solvation -36.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds