Wall clock time and date at job start Tue Mar 31 2020 22:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31790 * 122.74898 * 2 1 4 4 C 1.29019 * 117.12361 * 180.02562 * 3 2 1 5 5 S 1.70978 * 110.16851 * 359.72373 * 4 3 2 6 6 C 1.33633 * 122.74940 * 180.02562 * 2 1 3 7 7 C 1.50692 * 126.03984 * 359.97438 * 6 2 1 8 8 C 1.53003 * 109.47196 * 89.99985 * 7 6 2 9 9 C 1.50701 * 109.47284 * 180.02562 * 8 7 6 10 10 O 1.21280 * 119.99837 * 0.02562 * 9 8 7 11 11 N 1.34767 * 120.00052 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00024 * 183.41533 * 11 9 8 13 13 C 1.52996 * 113.28403 * 306.25364 * 12 11 9 14 14 C 1.53003 * 109.47175 * 292.16874 * 13 12 11 15 15 O 1.42906 * 109.46827 * 184.79976 * 14 13 12 16 16 C 1.53502 * 114.20430 * 173.18968 * 12 11 9 17 17 N 1.47069 * 87.98456 * 220.14320 * 16 12 11 18 18 C 1.36937 * 136.06018 * 207.08092 * 17 16 12 19 19 H 1.07992 * 120.00010 * 354.42598 * 18 17 16 20 20 C 1.38816 * 119.99873 * 174.42561 * 18 17 16 21 21 N 1.31617 * 120.00006 * 182.15138 * 20 18 17 22 22 Si 1.86804 * 120.00003 * 2.42295 * 20 18 17 23 23 H 1.48495 * 109.46785 * 173.50347 * 22 20 18 24 24 H 1.48495 * 109.46956 * 293.50455 * 22 20 18 25 25 H 1.48498 * 109.47103 * 53.50470 * 22 20 18 26 26 C 1.47076 * 87.88177 * 27.34606 * 17 16 12 27 27 H 1.09003 * 109.46901 * 270.00316 * 1 2 3 28 28 H 1.09003 * 109.47299 * 29.99369 * 1 2 3 29 29 H 1.08996 * 109.47320 * 149.99980 * 1 2 3 30 30 H 1.08004 * 124.91941 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.47128 * 330.00462 * 7 6 2 32 32 H 1.08999 * 109.47442 * 210.00331 * 7 6 2 33 33 H 1.09004 * 109.46692 * 60.00210 * 8 7 6 34 34 H 1.08999 * 109.47208 * 300.00490 * 8 7 6 35 35 H 0.97001 * 120.00166 * 3.41360 * 11 9 8 36 36 H 1.09008 * 109.46875 * 52.16827 * 13 12 11 37 37 H 1.08997 * 109.47420 * 172.16498 * 13 12 11 38 38 H 1.08995 * 109.47108 * 304.80384 * 14 13 12 39 39 H 1.08999 * 109.47178 * 64.80424 * 14 13 12 40 40 H 0.96698 * 113.99483 * 179.97438 * 15 14 13 41 41 H 1.09004 * 113.46744 * 105.36840 * 16 12 11 42 42 H 1.08997 * 113.52348 * 334.93709 * 16 12 11 43 43 H 0.97003 * 119.99466 * 5.29355 * 21 20 18 44 44 H 1.08993 * 113.46811 * 87.43787 * 26 17 16 45 45 H 1.09001 * 113.46521 * 217.87564 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 -0.0005 5 16 3.9332 -0.6730 0.0067 6 6 2.2299 -1.1239 -0.0005 7 6 1.6847 -2.5287 -0.0006 8 6 1.4996 -3.0039 -1.4431 9 6 0.9538 -4.4086 -1.4432 10 8 0.7340 -4.9738 -0.3930 11 7 0.7100 -5.0367 -2.6104 12 6 0.1096 -6.3731 -2.6116 13 6 0.8720 -7.3794 -1.7475 14 6 2.2359 -7.6644 -2.3798 15 8 2.9019 -8.6862 -1.6351 16 6 -0.2612 -6.8951 -4.0067 17 7 -1.4925 -7.4427 -3.4176 18 6 -2.3420 -8.4801 -3.6958 19 1 -2.2028 -9.0666 -4.5918 20 6 -3.3821 -8.7777 -2.8260 21 7 -4.1728 -9.8009 -3.0714 22 14 -3.6643 -7.7215 -1.3113 23 1 -4.9179 -8.1464 -0.6381 24 1 -2.5216 -7.8816 -0.3764 25 1 -3.7776 -6.2970 -1.7152 26 6 -1.4136 -6.3817 -2.4022 27 1 -0.3633 0.0001 1.0277 28 1 -0.3634 0.8901 -0.5137 29 1 -0.3634 -0.8899 -0.5138 30 1 4.2060 1.8027 -0.0010 31 1 0.7237 -2.5456 0.5136 32 1 2.3831 -3.1896 0.5129 33 1 2.4607 -2.9871 -1.9573 34 1 0.8013 -2.3431 -1.9566 35 1 0.9319 -4.6040 -3.4497 36 1 1.0137 -6.9666 -0.7486 37 1 0.3020 -8.3060 -1.6802 38 1 2.0971 -7.9964 -3.4086 39 1 2.8382 -6.7560 -2.3692 40 1 3.7746 -8.9189 -1.9803 41 1 0.4196 -7.6607 -4.3788 42 1 -0.4425 -6.1033 -4.7335 43 1 -3.9834 -10.3924 -3.8165 44 1 -1.8987 -5.4539 -2.7052 45 1 -1.7145 -6.7099 -1.4072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329707905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:36 Heat of formation + Delta-G solvation = -13.515419 kcal Electronic energy + Delta-G solvation = -27444.158208 eV Core-core repulsion = 23589.415221 eV Total energy + Delta-G solvation = -3854.742987 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.75931 -40.86364 -39.70880 -37.75702 -35.49935 -35.26627 -34.14599 -32.33185 -31.63175 -29.33933 -28.54308 -27.31504 -26.01331 -24.97976 -24.12107 -23.21508 -21.34818 -20.49335 -19.77114 -19.53681 -19.05066 -18.49924 -18.20261 -17.50747 -16.97960 -16.78570 -16.23889 -15.98731 -15.81856 -15.72710 -15.18285 -15.09846 -15.01588 -14.54100 -14.27428 -14.07755 -13.54232 -13.46978 -13.46081 -13.37776 -13.26430 -13.18835 -13.04119 -12.74246 -12.56551 -12.44294 -12.31887 -11.94322 -11.77471 -11.38696 -11.23812 -11.08012 -10.98715 -10.59696 -10.50542 -10.15805 -10.04217 -9.62329 -9.25954 -8.65723 -5.51726 -0.23051 0.45985 0.82780 1.33747 1.41349 1.59206 1.68964 1.80448 2.10021 2.45368 2.93693 3.05235 3.16857 3.36994 3.48594 3.67100 3.94409 4.04299 4.05332 4.13978 4.24358 4.27627 4.34499 4.36156 4.40567 4.50281 4.53803 4.56462 4.61600 4.74687 4.77198 4.84269 4.94934 4.96382 5.02628 5.05100 5.09143 5.14625 5.22779 5.39284 5.62807 5.91376 6.64674 6.65877 6.79282 6.91439 7.27521 7.35116 8.19151 8.88227 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015172 B = 0.002877 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.084466 B = 9730.681356 C =10883.893800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.047 3.953 3 N -0.501 5.501 4 C 0.017 3.983 5 S 0.148 5.852 6 C -0.226 4.226 7 C -0.023 4.023 8 C -0.122 4.122 9 C 0.512 3.488 10 O -0.572 6.572 11 N -0.701 5.701 12 C 0.162 3.838 13 C -0.105 4.105 14 C 0.093 3.907 15 O -0.596 6.596 16 C 0.128 3.872 17 N -0.650 5.650 18 C -0.280 4.280 19 H 0.062 0.938 20 C -0.078 4.078 21 N -0.970 5.970 22 Si 1.105 2.895 23 H -0.302 1.302 24 H -0.288 1.288 25 H -0.266 1.266 26 C 0.084 3.916 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.227 0.773 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.422 0.578 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.397 0.603 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.250 0.750 44 H 0.059 0.941 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.410 23.200 1.784 32.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 N -0.215 5.215 4 C -0.280 4.280 5 S 0.402 5.598 6 C -0.347 4.347 7 C -0.063 4.063 8 C -0.163 4.163 9 C 0.300 3.700 10 O -0.451 6.451 11 N -0.354 5.354 12 C 0.074 3.926 13 C -0.144 4.144 14 C 0.016 3.984 15 O -0.404 6.404 16 C 0.002 3.998 17 N -0.379 5.379 18 C -0.407 4.407 19 H 0.079 0.921 20 C -0.271 4.271 21 N -0.616 5.616 22 Si 0.934 3.066 23 H -0.231 1.231 24 H -0.216 1.216 25 H -0.192 1.192 26 C -0.042 4.042 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.243 0.757 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.260 0.740 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.247 0.753 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 21.321 22.930 4.073 31.575 hybrid contribution 0.146 -0.573 -2.104 2.186 sum 21.467 22.357 1.968 31.057 Atomic orbital electron populations 1.20436 0.86568 1.03826 1.03335 1.20494 0.98950 0.86379 1.02600 1.66235 1.06222 1.32227 1.16839 1.28831 0.95041 1.01258 1.02876 1.83970 1.05659 1.03002 1.67187 1.25721 0.96015 1.00220 1.12740 1.19663 1.02002 0.88135 0.96504 1.21669 1.04762 0.91224 0.98609 1.21244 0.76783 0.88887 0.83084 1.90704 1.53327 1.68249 1.32858 1.45744 1.63484 1.16419 1.09793 1.21686 0.90526 0.83175 0.97211 1.21348 0.95439 0.97379 1.00236 1.21990 0.91924 0.90469 0.94031 1.86473 1.36866 1.58881 1.58217 1.22854 0.86841 0.96839 0.93254 1.45759 1.28746 1.29639 1.33765 1.19980 1.08981 1.05680 1.06084 0.92058 1.26689 0.94773 1.01211 1.04428 1.71002 1.40054 1.17465 1.33076 0.83242 0.74605 0.74981 0.73730 1.23052 1.21614 1.19175 1.23370 0.95461 0.91955 0.93368 0.90527 0.90569 0.89748 0.75690 0.89813 0.90404 0.86084 0.86508 0.73996 0.90236 0.93739 0.92733 0.91706 0.75303 0.91852 0.90508 0.94100 0.92318 0.94805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 9.82 71.24 0.70 -0.56 16 2 C 0.05 0.84 6.74 41.52 0.28 1.12 16 3 N -0.50 -9.31 10.53 -191.55 -2.02 -11.33 16 4 C 0.02 0.22 12.23 130.66 1.60 1.81 16 5 S 0.15 1.74 23.22 -56.49 -1.31 0.43 16 6 C -0.23 -3.54 5.84 24.64 0.14 -3.40 16 7 C -0.02 -0.37 4.44 29.85 0.13 -0.24 16 8 C -0.12 -1.65 5.68 29.85 0.17 -1.48 16 9 C 0.51 11.56 7.63 87.66 0.67 12.22 16 10 O -0.57 -18.64 13.74 -3.03 -0.04 -18.68 16 11 N -0.70 -14.95 5.24 -421.96 -2.21 -17.16 16 12 C 0.16 5.21 0.82 4.16 0.00 5.21 16 13 C -0.11 -3.78 4.91 30.59 0.15 -3.63 16 14 C 0.09 2.50 6.89 71.98 0.50 2.99 16 15 O -0.60 -16.73 13.66 -148.98 -2.04 -18.77 16 16 C 0.13 4.30 7.81 83.18 0.65 4.95 16 17 N -0.65 -30.89 3.46 -737.79 -2.56 -33.44 16 18 C -0.28 -16.23 11.09 84.03 0.93 -15.30 16 19 H 0.06 3.76 8.05 -2.91 -0.02 3.74 16 20 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 21 N -0.97 -63.81 13.70 21.65 0.30 -63.51 16 22 Si 1.11 57.68 25.05 68.60 1.72 59.40 16 23 H -0.30 -15.98 7.11 99.48 0.71 -15.27 16 24 H -0.29 -14.83 6.51 99.48 0.65 -14.18 16 25 H -0.27 -12.59 6.53 99.48 0.65 -11.94 16 26 C 0.08 3.54 5.30 83.27 0.44 3.98 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.13 7.18 -2.39 -0.02 1.11 16 30 H 0.23 1.20 8.06 -2.91 -0.02 1.17 16 31 H 0.08 1.59 7.39 -2.38 -0.02 1.57 16 32 H 0.08 1.41 8.10 -2.39 -0.02 1.39 16 33 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.12 1.19 7.98 -2.39 -0.02 1.17 16 35 H 0.42 5.39 8.68 -92.71 -0.80 4.59 16 36 H 0.08 3.12 5.79 -2.38 -0.01 3.10 16 37 H 0.04 1.99 7.94 -2.39 -0.02 1.97 16 38 H 0.05 1.35 6.63 -2.39 -0.02 1.33 16 39 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.40 6.40 9.12 -74.06 -0.68 5.73 16 41 H 0.06 2.04 6.70 -2.39 -0.02 2.02 16 42 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.25 16.30 8.73 -92.71 -0.81 15.49 16 44 H 0.06 2.31 8.07 -2.39 -0.02 2.29 16 45 H 0.03 1.61 3.99 -2.39 -0.01 1.60 16 Total: -1.00 -84.20 376.54 -1.92 -86.12 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -0.60 Total: 13.59 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 6.83 Total: 3.35 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -6.49 Total: -125.45 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -2.08 Total: -37.45 kcal Atomic # 14 Polarization: 57.68 SS G_CDS: 1.72 Total: 59.40 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -1.31 Total: 0.43 kcal Total: -84.20 -1.92 -86.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329707905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.609 kcal (2) G-P(sol) polarization free energy of solvation -84.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds