Wall clock time and date at job start Tue Mar 31 2020 22:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34048 * 126.77288 * 2 1 4 4 N 1.20923 * 111.56246 * 179.97438 * 3 2 1 5 5 C 1.30173 * 111.60809 * 359.74811 * 4 3 2 6 6 C 1.35441 * 126.78064 * 180.02562 * 2 1 3 7 7 C 1.50702 * 128.00501 * 359.96281 * 6 2 1 8 8 N 1.46904 * 109.46891 * 80.00108 * 7 6 2 9 9 C 1.46900 * 110.99691 * 179.97438 * 8 7 6 10 10 H 1.09003 * 110.89072 * 328.87687 * 9 8 7 11 11 C 1.55156 * 111.00504 * 205.00250 * 9 8 7 12 12 C 1.54321 * 102.94454 * 206.38560 * 11 9 8 13 13 H 1.09002 * 109.88450 * 141.76033 * 12 11 9 14 14 C 1.52997 * 109.88460 * 262.77309 * 12 11 9 15 15 N 1.47023 * 107.40151 * 22.26868 * 12 11 9 16 16 C 1.34777 * 125.65125 * 180.93013 * 15 12 11 17 17 O 1.21279 * 119.99614 * 359.97438 * 16 15 12 18 18 C 1.50701 * 120.00045 * 179.97438 * 16 15 12 19 19 S 1.80998 * 109.46926 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99979 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00062 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99897 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99958 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99689 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.46788 * 90.00277 * 24 22 20 26 26 H 1.48501 * 109.46477 * 209.99892 * 24 22 20 27 27 H 1.48491 * 109.47123 * 330.00009 * 24 22 20 28 28 C 1.47740 * 108.53362 * 0.92871 * 15 12 11 29 29 H 1.09001 * 109.47175 * 269.99946 * 1 2 3 30 30 H 1.08996 * 109.47545 * 30.00008 * 1 2 3 31 31 H 1.09003 * 109.46914 * 150.00377 * 1 2 3 32 32 H 1.07996 * 126.80121 * 180.25528 * 5 4 3 33 33 H 1.08998 * 109.47237 * 320.00041 * 7 6 2 34 34 H 1.09001 * 109.47280 * 199.99890 * 7 6 2 35 35 H 1.00893 * 111.00191 * 303.95512 * 8 7 6 36 36 H 1.08995 * 110.72466 * 88.01808 * 11 9 8 37 37 H 1.09005 * 110.86811 * 324.82004 * 11 9 8 38 38 H 1.09002 * 109.47153 * 59.68222 * 14 12 11 39 39 H 1.09001 * 109.46832 * 299.68412 * 14 12 11 40 40 H 1.09004 * 109.47261 * 179.68394 * 14 12 11 41 41 H 1.09000 * 109.47150 * 300.00028 * 18 16 15 42 42 H 1.08994 * 109.47159 * 59.99947 * 18 16 15 43 43 H 0.97000 * 119.99470 * 179.97438 * 23 22 20 44 44 H 1.08998 * 110.38561 * 217.10759 * 28 15 12 45 45 H 1.09004 * 110.38061 * 94.87238 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0737 0.0000 4 7 3.4763 0.7565 0.0005 5 6 3.6214 -0.5371 0.0062 6 6 2.3180 -1.0848 -0.0005 7 6 1.9225 -2.5390 -0.0004 8 7 1.5612 -2.9483 -1.3642 9 6 1.1698 -4.3636 -1.4028 10 1 1.7070 -4.9362 -0.6466 11 6 1.3919 -4.9638 -2.8162 12 6 0.3617 -6.1115 -2.8703 13 1 -0.0763 -6.1699 -3.8667 14 6 1.0410 -7.4374 -2.5222 15 7 -0.6839 -5.8106 -1.8814 16 6 -1.7555 -6.5824 -1.6117 17 8 -1.9174 -7.6252 -2.2093 18 6 -2.7522 -6.1495 -0.5676 19 16 -4.0657 -7.3879 -0.4374 20 6 -5.0595 -6.6492 0.8162 21 1 -4.7677 -5.7041 1.2496 22 6 -6.2175 -7.2820 1.2466 23 7 -6.5735 -8.4338 0.7179 24 14 -7.2707 -6.4992 2.5761 25 1 -8.2844 -5.6146 1.9476 26 1 -7.9558 -7.5621 3.3546 27 1 -6.4091 -5.6988 3.4827 28 6 -0.3620 -4.5219 -1.2348 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 4.5528 -1.0837 0.0118 33 1 1.0678 -2.6831 0.6606 34 1 2.7591 -3.1431 0.3506 35 1 0.8306 -2.3605 -1.7366 36 1 2.4059 -5.3508 -2.9160 37 1 1.1854 -4.2234 -3.5892 38 1 1.4657 -7.3760 -1.5202 39 1 1.8348 -7.6387 -3.2415 40 1 0.3065 -8.2421 -2.5569 41 1 -2.2503 -6.0502 0.3948 42 1 -3.1838 -5.1902 -0.8530 43 1 -7.3825 -8.8761 1.0190 44 1 -0.6267 -4.5508 -0.1779 45 1 -0.8845 -3.7058 -1.7339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331961545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:06 Heat of formation + Delta-G solvation = 28.439610 kcal Electronic energy + Delta-G solvation = -26665.521858 eV Core-core repulsion = 22812.598177 eV Total energy + Delta-G solvation = -3852.923681 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.27021 -40.20775 -37.96070 -36.27066 -33.90419 -33.45731 -32.47007 -32.19888 -30.09016 -28.77806 -28.16868 -26.03944 -25.71561 -25.50547 -22.98303 -22.55745 -21.11821 -20.85176 -19.03584 -17.97339 -17.74259 -17.59478 -16.74011 -16.45271 -15.90267 -15.12790 -14.93703 -14.84405 -14.76847 -14.50759 -14.04525 -13.99594 -13.66970 -13.51110 -13.38031 -13.15055 -13.06266 -12.95824 -12.65076 -12.52520 -12.30372 -12.09338 -11.85375 -11.67148 -11.44640 -11.12458 -11.09579 -11.05129 -10.80860 -10.80042 -10.65402 -9.86002 -9.63993 -9.41479 -9.10650 -8.89094 -8.55632 -8.27872 -6.54711 -6.25636 -3.96631 1.07189 1.86591 2.70970 2.83011 3.01908 3.18799 3.21508 3.26603 3.50824 3.77657 3.96083 4.15876 4.18923 4.27224 4.29575 4.40169 4.63522 4.70416 4.92664 4.95672 4.97260 5.00677 5.06834 5.09488 5.12647 5.17681 5.26114 5.33849 5.41188 5.44660 5.48495 5.56360 5.60712 5.68788 5.70876 5.76148 5.82800 6.04436 6.06625 6.27080 6.47426 6.53714 6.82650 7.54909 7.62960 7.90243 8.30718 8.52726 9.19516 10.81763 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.002658 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.290179 B =10533.399715 C =12877.573982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.023 4.023 3 O 0.095 5.905 4 N -0.369 5.369 5 C 0.009 3.991 6 C -0.200 4.200 7 C 0.134 3.866 8 N -0.670 5.670 9 C 0.076 3.924 10 H 0.097 0.903 11 C -0.113 4.113 12 C 0.134 3.866 13 H 0.074 0.926 14 C -0.164 4.164 15 N -0.620 5.620 16 C 0.549 3.451 17 O -0.511 6.511 18 C -0.147 4.147 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.075 3.925 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.190 0.810 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.344 0.656 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.269 0.731 44 H 0.076 0.924 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.162 15.299 -2.855 24.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 O 0.031 5.969 4 N -0.073 5.073 5 C -0.170 4.170 6 C -0.205 4.205 7 C 0.005 3.995 8 N -0.301 5.301 9 C -0.035 4.035 10 H 0.115 0.885 11 C -0.152 4.152 12 C 0.030 3.970 13 H 0.092 0.908 14 C -0.222 4.222 15 N -0.358 5.358 16 C 0.338 3.662 17 O -0.385 6.385 18 C -0.297 4.297 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.051 4.051 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.207 0.793 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.164 0.836 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 20.218 14.459 -3.917 25.163 hybrid contribution -1.588 1.038 2.002 2.758 sum 18.630 15.497 -1.915 24.308 Atomic orbital electron populations 1.20393 0.83920 1.04765 1.04478 1.24380 0.96255 0.85976 1.02126 1.84821 1.11449 1.33075 1.67580 1.73896 0.97087 1.16931 1.19391 1.24900 0.99750 0.90071 1.02259 1.20955 0.92393 0.96794 1.10321 1.20183 1.00738 0.88681 0.89887 1.60579 1.46115 1.02680 1.20737 1.22800 0.92981 0.88993 0.98723 0.88525 1.22696 0.99203 0.96706 0.96574 1.21527 0.87591 0.95008 0.92827 0.90769 1.22157 1.00873 0.97852 1.01276 1.48545 1.24346 1.22017 1.40853 1.20003 0.79965 0.83042 0.83225 1.90698 1.74127 1.22935 1.50695 1.23509 1.00786 1.06250 0.99186 1.85423 1.20160 1.25870 1.51824 1.22839 1.11097 1.09908 1.24530 0.91007 1.24996 0.96767 0.94840 0.96967 1.70017 1.24174 1.14882 1.41120 0.86169 0.79864 0.78828 0.80653 1.20243 1.20719 1.19707 1.23061 0.96286 0.87014 0.98751 0.89045 0.89434 0.89277 0.79319 0.93164 0.89224 0.83619 0.89643 0.90199 0.92708 0.91990 0.90705 0.89526 0.89501 0.92142 0.90517 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.33 10.30 36.01 0.37 0.04 16 2 C -0.02 -0.16 7.49 -35.31 -0.26 -0.43 16 3 O 0.10 0.90 11.20 17.15 0.19 1.09 16 4 N -0.37 -3.81 12.07 30.36 0.37 -3.44 16 5 C 0.01 0.08 12.16 -17.06 -0.21 -0.13 16 6 C -0.20 -1.45 5.84 -104.42 -0.61 -2.06 16 7 C 0.13 0.80 5.88 -4.97 -0.03 0.77 16 8 N -0.67 -4.23 6.40 -105.72 -0.68 -4.90 16 9 C 0.08 0.56 3.38 -65.56 -0.22 0.33 16 10 H 0.10 0.72 7.83 -51.93 -0.41 0.31 16 11 C -0.11 -0.89 6.19 -24.90 -0.15 -1.05 16 12 C 0.13 1.52 3.48 -66.96 -0.23 1.28 16 13 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 14 C -0.16 -1.90 9.06 37.16 0.34 -1.56 16 15 N -0.62 -8.33 3.09 -162.76 -0.50 -8.84 16 16 C 0.55 10.19 7.65 -10.98 -0.08 10.11 16 17 O -0.51 -11.43 14.77 5.56 0.08 -11.35 16 18 C -0.15 -2.91 5.18 36.01 0.19 -2.72 16 19 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 20 C -0.54 -14.96 9.50 30.94 0.29 -14.67 16 21 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.82 13.22 55.49 0.73 -25.09 16 24 Si 0.92 20.99 29.55 -169.99 -5.02 15.97 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 28 C 0.07 0.70 6.31 -2.35 -0.01 0.69 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.30 7.51 -51.93 -0.39 -0.09 16 32 H 0.19 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.09 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.34 2.00 7.63 -39.30 -0.30 1.70 16 36 H 0.08 0.60 7.83 -51.93 -0.41 0.20 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 1.12 6.76 -51.93 -0.35 0.77 16 41 H 0.09 1.59 7.86 -51.92 -0.41 1.18 16 42 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.08 0.72 7.51 -51.93 -0.39 0.33 16 45 H 0.07 0.56 7.75 -51.93 -0.40 0.16 16 LS Contribution 388.16 15.07 5.85 5.85 Total: -1.00 -34.85 388.16 -8.74 -43.59 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -6.82 Total: -1.67 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -0.73 Total: -7.42 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: -0.08 Total: -42.27 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.27 Total: -10.26 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.85 -8.74 -43.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331961545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.034 kcal (2) G-P(sol) polarization free energy of solvation -34.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds