Wall clock time and date at job start Tue Mar 31 2020 22:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34048 * 126.77288 * 2 1 4 4 N 1.20923 * 111.56246 * 179.97438 * 3 2 1 5 5 C 1.30173 * 111.60809 * 359.74811 * 4 3 2 6 6 C 1.35441 * 126.78064 * 180.02562 * 2 1 3 7 7 C 1.50702 * 128.00501 * 359.96281 * 6 2 1 8 8 N 1.46904 * 109.46891 * 80.00108 * 7 6 2 9 9 C 1.46900 * 110.99691 * 179.97438 * 8 7 6 10 10 H 1.09003 * 110.89072 * 328.87687 * 9 8 7 11 11 C 1.55156 * 111.00504 * 205.00250 * 9 8 7 12 12 C 1.54321 * 102.94454 * 206.38560 * 11 9 8 13 13 H 1.09002 * 109.88450 * 141.76033 * 12 11 9 14 14 C 1.52997 * 109.88460 * 262.77309 * 12 11 9 15 15 N 1.47023 * 107.40151 * 22.26868 * 12 11 9 16 16 C 1.34777 * 125.65125 * 180.93013 * 15 12 11 17 17 O 1.21279 * 119.99614 * 359.97438 * 16 15 12 18 18 C 1.50701 * 120.00045 * 179.97438 * 16 15 12 19 19 S 1.80998 * 109.46926 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99979 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00062 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99897 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99958 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99689 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.46788 * 90.00277 * 24 22 20 26 26 H 1.48501 * 109.46477 * 209.99892 * 24 22 20 27 27 H 1.48491 * 109.47123 * 330.00009 * 24 22 20 28 28 C 1.47740 * 108.53362 * 0.92871 * 15 12 11 29 29 H 1.09001 * 109.47175 * 269.99946 * 1 2 3 30 30 H 1.08996 * 109.47545 * 30.00008 * 1 2 3 31 31 H 1.09003 * 109.46914 * 150.00377 * 1 2 3 32 32 H 1.07996 * 126.80121 * 180.25528 * 5 4 3 33 33 H 1.08998 * 109.47237 * 320.00041 * 7 6 2 34 34 H 1.09001 * 109.47280 * 199.99890 * 7 6 2 35 35 H 1.00893 * 111.00191 * 303.95512 * 8 7 6 36 36 H 1.08995 * 110.72466 * 88.01808 * 11 9 8 37 37 H 1.09005 * 110.86811 * 324.82004 * 11 9 8 38 38 H 1.09002 * 109.47153 * 59.68222 * 14 12 11 39 39 H 1.09001 * 109.46832 * 299.68412 * 14 12 11 40 40 H 1.09004 * 109.47261 * 179.68394 * 14 12 11 41 41 H 1.09000 * 109.47150 * 300.00028 * 18 16 15 42 42 H 1.08994 * 109.47159 * 59.99947 * 18 16 15 43 43 H 0.97000 * 119.99470 * 179.97438 * 23 22 20 44 44 H 1.08998 * 110.38561 * 217.10759 * 28 15 12 45 45 H 1.09004 * 110.38061 * 94.87238 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0737 0.0000 4 7 3.4763 0.7565 0.0005 5 6 3.6214 -0.5371 0.0062 6 6 2.3180 -1.0848 -0.0005 7 6 1.9225 -2.5390 -0.0004 8 7 1.5612 -2.9483 -1.3642 9 6 1.1698 -4.3636 -1.4028 10 1 1.7070 -4.9362 -0.6466 11 6 1.3919 -4.9638 -2.8162 12 6 0.3617 -6.1115 -2.8703 13 1 -0.0763 -6.1699 -3.8667 14 6 1.0410 -7.4374 -2.5222 15 7 -0.6839 -5.8106 -1.8814 16 6 -1.7555 -6.5824 -1.6117 17 8 -1.9174 -7.6252 -2.2093 18 6 -2.7522 -6.1495 -0.5676 19 16 -4.0657 -7.3879 -0.4374 20 6 -5.0595 -6.6492 0.8162 21 1 -4.7677 -5.7041 1.2496 22 6 -6.2175 -7.2820 1.2466 23 7 -6.5735 -8.4338 0.7179 24 14 -7.2707 -6.4992 2.5761 25 1 -8.2844 -5.6146 1.9476 26 1 -7.9558 -7.5621 3.3546 27 1 -6.4091 -5.6988 3.4827 28 6 -0.3620 -4.5219 -1.2348 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 4.5528 -1.0837 0.0118 33 1 1.0678 -2.6831 0.6606 34 1 2.7591 -3.1431 0.3506 35 1 0.8306 -2.3605 -1.7366 36 1 2.4059 -5.3508 -2.9160 37 1 1.1854 -4.2234 -3.5892 38 1 1.4657 -7.3760 -1.5202 39 1 1.8348 -7.6387 -3.2415 40 1 0.3065 -8.2421 -2.5569 41 1 -2.2503 -6.0502 0.3948 42 1 -3.1838 -5.1902 -0.8530 43 1 -7.3825 -8.8761 1.0190 44 1 -0.6267 -4.5508 -0.1779 45 1 -0.8845 -3.7058 -1.7339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331961545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:06 Heat of formation + Delta-G solvation = 4.607386 kcal Electronic energy + Delta-G solvation = -26666.555301 eV Core-core repulsion = 22812.598177 eV Total energy + Delta-G solvation = -3853.957123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.86909 -41.27286 -39.03720 -37.01340 -34.59908 -34.55787 -33.99671 -33.32328 -30.79740 -30.19138 -28.67557 -27.66552 -26.80808 -26.34411 -23.60346 -23.46192 -21.78566 -21.52187 -20.33578 -19.54205 -18.58989 -18.23597 -17.92542 -17.26452 -16.90837 -16.86771 -16.27559 -16.00487 -15.63981 -15.47882 -15.00346 -14.81007 -14.58196 -14.33056 -14.20360 -14.10232 -13.96744 -13.77533 -13.57445 -13.45749 -13.16800 -13.09385 -13.00675 -12.88537 -12.77991 -12.58393 -12.39871 -12.04951 -11.87125 -11.72965 -11.56167 -11.28175 -11.14190 -10.87760 -10.27615 -10.15927 -9.73532 -9.37853 -8.67970 -8.34604 -6.13210 0.52739 1.23884 1.30107 1.42952 1.45779 1.56204 1.59092 2.06743 2.22980 2.27374 2.99758 3.09518 3.29961 3.41733 3.57007 3.63034 3.73075 3.86370 3.92147 4.07900 4.13393 4.21061 4.25400 4.31696 4.40402 4.45843 4.51877 4.61169 4.68746 4.70867 4.74693 4.79292 4.82224 4.88317 4.99447 5.05834 5.08885 5.16077 5.28207 5.33685 5.41476 5.52869 5.95713 6.19599 6.34808 6.43341 7.06593 7.15559 7.32621 8.74607 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.002658 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.290179 B =10533.399715 C =12877.573982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.021 4.021 3 O 0.075 5.925 4 N -0.404 5.404 5 C 0.006 3.994 6 C -0.206 4.206 7 C 0.138 3.862 8 N -0.666 5.666 9 C 0.091 3.909 10 H 0.102 0.898 11 C -0.100 4.100 12 C 0.128 3.872 13 H 0.062 0.938 14 C -0.159 4.159 15 N -0.610 5.610 16 C 0.546 3.454 17 O -0.562 6.562 18 C -0.119 4.119 19 S -0.153 6.153 20 C -0.543 4.543 21 H 0.084 0.916 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.268 1.268 26 H -0.279 1.279 27 H -0.256 1.256 28 C 0.065 3.935 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.208 0.792 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.350 0.650 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.032 0.968 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.271 0.729 44 H 0.082 0.918 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.227 17.561 -1.885 26.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 O 0.014 5.986 4 N -0.111 5.111 5 C -0.173 4.173 6 C -0.210 4.210 7 C 0.009 3.991 8 N -0.298 5.298 9 C -0.020 4.020 10 H 0.120 0.880 11 C -0.138 4.138 12 C 0.025 3.975 13 H 0.080 0.920 14 C -0.217 4.217 15 N -0.345 5.345 16 C 0.334 3.666 17 O -0.440 6.440 18 C -0.270 4.270 19 S 0.074 5.926 20 C -0.691 4.691 21 H 0.102 0.898 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.193 1.193 26 H -0.205 1.205 27 H -0.180 1.180 28 C -0.059 4.059 29 H 0.119 0.881 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.225 0.775 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.170 0.830 36 H 0.120 0.880 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.052 0.948 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 21.317 16.787 -2.951 27.294 hybrid contribution -1.794 0.387 1.632 2.456 sum 19.523 17.175 -1.319 26.035 Atomic orbital electron populations 1.20567 0.81908 1.05823 1.05356 1.24945 0.97352 0.85474 1.00815 1.84781 1.11550 1.34086 1.68166 1.73893 0.97739 1.18171 1.21316 1.25347 1.01089 0.89746 1.01114 1.21113 0.91902 0.97444 1.10534 1.20209 1.01377 0.87809 0.89706 1.60556 1.46117 1.01993 1.21102 1.22655 0.91197 0.89748 0.98408 0.87956 1.22636 0.98610 0.95320 0.97251 1.21749 0.87708 0.96502 0.91559 0.91995 1.22107 1.00447 0.96626 1.02516 1.48464 1.22890 1.22532 1.40641 1.19758 0.81027 0.83005 0.82837 1.90683 1.75600 1.25252 1.52479 1.23298 0.98724 1.04076 1.00866 1.85639 1.23912 1.30455 1.52559 1.23174 1.11351 1.10225 1.24377 0.89814 1.26144 0.98253 0.95266 0.99543 1.70190 1.24903 1.16736 1.43009 0.84949 0.77835 0.77889 0.77294 1.19283 1.20482 1.17965 1.23449 0.98287 0.85205 0.98976 0.88138 0.88649 0.87936 0.77543 0.92229 0.88533 0.83013 0.87980 0.89278 0.92054 0.89438 0.94845 0.87703 0.87675 0.92022 0.89920 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.30 71.24 0.73 0.28 16 2 C -0.02 -0.26 7.49 25.04 0.19 -0.08 16 3 O 0.08 1.36 11.20 71.55 0.80 2.16 16 4 N -0.40 -8.03 12.07 -59.26 -0.72 -8.75 16 5 C 0.01 0.09 12.16 85.71 1.04 1.13 16 6 C -0.21 -2.46 5.84 -19.74 -0.12 -2.57 16 7 C 0.14 1.14 5.88 85.56 0.50 1.65 16 8 N -0.67 -5.75 6.40 -488.39 -3.13 -8.88 16 9 C 0.09 0.98 3.38 46.31 0.16 1.14 16 10 H 0.10 1.08 7.83 -2.39 -0.02 1.06 16 11 C -0.10 -1.22 6.19 31.78 0.20 -1.02 16 12 C 0.13 2.68 3.48 45.34 0.16 2.84 16 13 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 14 C -0.16 -3.54 9.06 71.98 0.65 -2.89 16 15 N -0.61 -15.43 3.09 -787.26 -2.43 -17.86 16 16 C 0.55 20.23 7.65 87.66 0.67 20.90 16 17 O -0.56 -26.18 14.77 -3.03 -0.04 -26.23 16 18 C -0.12 -4.62 5.18 71.24 0.37 -4.25 16 19 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 20 C -0.54 -30.40 9.50 67.96 0.65 -29.76 16 21 H 0.08 4.31 7.80 -2.91 -0.02 4.28 16 22 C 0.01 0.71 5.49 84.86 0.47 1.17 16 23 N -0.91 -55.54 13.22 21.65 0.29 -55.25 16 24 Si 1.00 42.60 29.55 68.60 2.03 44.63 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 27 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 28 C 0.07 1.00 6.31 86.79 0.55 1.55 16 29 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.10 0.31 7.51 -2.39 -0.02 0.30 16 32 H 0.21 1.99 8.06 -2.91 -0.02 1.96 16 33 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.10 0.71 8.09 -2.39 -0.02 0.69 16 35 H 0.35 2.60 7.63 -89.70 -0.68 1.92 16 36 H 0.10 1.01 7.83 -2.39 -0.02 0.99 16 37 H 0.09 0.99 8.14 -2.38 -0.02 0.98 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.03 1.03 6.76 -2.38 -0.02 1.01 16 41 H 0.10 3.68 7.86 -2.40 -0.02 3.66 16 42 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16 43 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 44 H 0.08 1.23 7.51 -2.39 -0.02 1.21 16 45 H 0.09 1.08 7.75 -2.39 -0.02 1.06 16 Total: -1.00 -79.82 388.16 2.16 -77.66 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.32 Total: 12.01 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 6.21 Total: -9.92 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -5.99 Total: -90.75 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: 0.76 Total: -24.06 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -79.82 2.16 -77.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331961545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.263 kcal (2) G-P(sol) polarization free energy of solvation -79.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds