Wall clock time and date at job start Tue Mar 31 2020 22:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30178 * 126.80606 * 2 1 4 4 O 1.20924 * 111.60789 * 180.25707 * 3 2 1 5 5 C 1.34040 * 111.56178 * 359.74557 * 4 3 2 6 6 C 1.35449 * 106.45246 * 0.02562 * 5 4 3 7 7 C 1.50697 * 128.00968 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47090 * 260.02483 * 7 6 5 9 9 C 1.46901 * 111.00039 * 180.02562 * 8 7 6 10 10 H 1.08996 * 110.88685 * 328.87640 * 9 8 7 11 11 C 1.55156 * 111.00026 * 204.99946 * 9 8 7 12 12 C 1.54329 * 102.94072 * 206.42044 * 11 9 8 13 13 H 1.09000 * 109.88522 * 262.77914 * 12 11 9 14 14 C 1.53007 * 110.01206 * 141.68304 * 12 11 9 15 15 N 1.47025 * 107.26778 * 22.19637 * 12 11 9 16 16 C 1.34774 * 125.64574 * 181.02230 * 15 12 11 17 17 O 1.21279 * 120.00472 * 359.97438 * 16 15 12 18 18 C 1.50706 * 120.00020 * 180.02562 * 16 15 12 19 19 S 1.81002 * 109.47200 * 179.97438 * 18 16 15 20 20 C 1.76198 * 99.99878 * 179.97438 * 19 18 16 21 21 H 1.08006 * 120.00031 * 359.97438 * 20 19 18 22 22 C 1.38801 * 120.00096 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99737 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99933 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47409 * 89.99815 * 24 22 20 26 26 H 1.48504 * 109.46732 * 209.99538 * 24 22 20 27 27 H 1.48503 * 109.47095 * 329.99265 * 24 22 20 28 28 C 1.47419 * 108.70349 * 1.28347 * 15 12 11 29 29 H 1.09004 * 109.46644 * 270.16798 * 1 2 3 30 30 H 1.09003 * 109.46940 * 30.16229 * 1 2 3 31 31 H 1.08993 * 109.47325 * 150.16363 * 1 2 3 32 32 H 1.08006 * 126.77174 * 180.02562 * 5 4 3 33 33 H 1.09001 * 109.47025 * 140.02601 * 7 6 5 34 34 H 1.08997 * 109.47053 * 20.02281 * 7 6 5 35 35 H 1.00902 * 110.99953 * 303.95265 * 8 7 6 36 36 H 1.08998 * 110.72240 * 88.06517 * 11 9 8 37 37 H 1.08999 * 110.87618 * 324.85366 * 11 9 8 38 38 H 1.09005 * 109.46876 * 300.66343 * 14 12 11 39 39 H 1.08995 * 109.46800 * 60.66080 * 14 12 11 40 40 H 1.08997 * 109.47253 * 180.66568 * 14 12 11 41 41 H 1.09001 * 109.46953 * 299.99667 * 18 16 15 42 42 H 1.09000 * 109.47318 * 59.99264 * 18 16 15 43 43 H 0.97001 * 119.99701 * 180.02562 * 23 22 20 44 44 H 1.09006 * 110.36824 * 94.48688 * 28 15 12 45 45 H 1.08998 * 110.37021 * 216.80393 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0050 5 6 3.6024 -0.6069 -0.0036 6 6 2.3539 -1.1321 0.0026 7 6 1.9590 -2.5864 0.0060 8 7 1.5930 -2.9976 -1.3560 9 6 1.2009 -4.4129 -1.3911 10 1 1.7403 -4.9844 -0.6359 11 6 1.4180 -5.0151 -2.8045 12 6 0.3863 -6.1618 -2.8537 13 1 0.8701 -7.1066 -2.6058 14 6 -0.2362 -6.2465 -4.2488 15 7 -0.6533 -5.8566 -1.8599 16 6 -1.7244 -6.6260 -1.5821 17 8 -1.8913 -7.6703 -2.1757 18 6 -2.7154 -6.1881 -0.5345 19 16 -4.0307 -7.4237 -0.3943 20 6 -5.0170 -6.6793 0.8618 21 1 -4.7212 -5.7334 1.2910 22 6 -6.1735 -7.3091 1.3004 23 7 -6.5337 -8.4621 0.7776 24 14 -7.2195 -6.5196 2.6315 25 1 -8.2353 -5.6364 2.0042 26 1 -7.9021 -7.5785 3.4177 27 1 -6.3528 -5.7163 3.5308 28 6 -0.3334 -4.5665 -1.2222 29 1 -0.3633 0.0030 1.0277 30 1 -0.3633 0.8886 -0.5164 31 1 -0.3633 -0.8914 -0.5112 32 1 4.5339 -1.1535 -0.0068 33 1 1.1067 -2.7299 0.6702 34 1 2.7971 -3.1896 0.3548 35 1 0.8608 -2.4105 -1.7265 36 1 2.4313 -5.4034 -2.9068 37 1 1.2099 -4.2757 -3.5778 38 1 -0.7247 -5.3015 -4.4867 39 1 0.5438 -6.4473 -4.9831 40 1 -0.9714 -7.0510 -4.2704 41 1 -2.2085 -6.0861 0.4251 42 1 -3.1471 -5.2292 -0.8210 43 1 -7.3422 -8.9021 1.0838 44 1 -0.8563 -3.7539 -1.7267 45 1 -0.5978 -4.5900 -0.1650 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331962024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:19 Heat of formation + Delta-G solvation = 27.205584 kcal Electronic energy + Delta-G solvation = -26634.326203 eV Core-core repulsion = 22781.349011 eV Total energy + Delta-G solvation = -3852.977192 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.27770 -40.19178 -37.95002 -36.34533 -34.46768 -32.46905 -32.41790 -32.17713 -29.83523 -29.04412 -28.72639 -26.14410 -25.72310 -25.49612 -22.28248 -21.92334 -21.67776 -21.08823 -19.01334 -17.92917 -17.83377 -17.70134 -17.02843 -16.31758 -15.89338 -15.35604 -14.91444 -14.85194 -14.81923 -14.34679 -13.97231 -13.73542 -13.70061 -13.52636 -13.23179 -13.11442 -12.92574 -12.83105 -12.80088 -12.63828 -12.45130 -12.04688 -11.85120 -11.63338 -11.37987 -11.10975 -11.06344 -11.04249 -10.88620 -10.79250 -10.25152 -9.90355 -9.85117 -9.42716 -9.10077 -8.90014 -8.54881 -8.27334 -6.54121 -6.25098 -3.96030 1.13634 1.79191 2.82900 2.90150 3.02511 3.19371 3.22213 3.27128 3.51263 3.71925 3.87728 4.12481 4.16568 4.24173 4.37143 4.50823 4.58965 4.71519 4.95934 4.98517 5.03814 5.06132 5.09594 5.10062 5.11869 5.25985 5.32720 5.35538 5.40456 5.44156 5.46466 5.57673 5.61401 5.68861 5.74120 5.74984 5.83769 6.06070 6.07221 6.27050 6.47405 6.53327 6.82104 7.55560 7.63557 7.92264 8.31351 8.53182 9.20103 10.82324 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010476 B = 0.002657 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.057876 B =10535.141290 C =12836.223741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.023 3.977 3 N -0.367 5.367 4 O 0.096 5.904 5 C -0.040 4.040 6 C -0.199 4.199 7 C 0.133 3.867 8 N -0.670 5.670 9 C 0.075 3.925 10 H 0.097 0.903 11 C -0.113 4.113 12 C 0.134 3.866 13 H 0.075 0.925 14 C -0.163 4.163 15 N -0.620 5.620 16 C 0.549 3.451 17 O -0.511 6.511 18 C -0.147 4.147 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.075 3.925 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.217 0.783 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.346 0.654 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.269 0.731 44 H 0.067 0.933 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.544 14.893 -3.513 26.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.136 4.136 3 N -0.073 5.073 4 O 0.032 5.968 5 C -0.122 4.122 6 C -0.204 4.204 7 C 0.004 3.996 8 N -0.301 5.301 9 C -0.036 4.036 10 H 0.115 0.885 11 C -0.152 4.152 12 C 0.031 3.969 13 H 0.093 0.907 14 C -0.221 4.221 15 N -0.357 5.357 16 C 0.337 3.663 17 O -0.385 6.385 18 C -0.298 4.298 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.051 4.051 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.233 0.767 33 H 0.069 0.931 34 H 0.107 0.893 35 H 0.165 0.835 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 21.526 14.331 -4.560 26.259 hybrid contribution -1.401 0.960 2.002 2.626 sum 20.125 15.291 -2.558 25.404 Atomic orbital electron populations 1.20197 0.85907 1.03857 1.03681 1.23571 0.99032 0.88486 1.02555 1.73869 0.89436 1.24200 1.19769 1.84831 1.21567 1.23094 1.67314 1.25825 1.00773 0.83486 1.02153 1.21135 0.92459 0.97051 1.09729 1.20179 1.00867 0.88469 0.90089 1.60603 1.46008 1.02699 1.20804 1.22857 0.93000 0.89059 0.98682 0.88473 1.22713 0.98934 0.96888 0.96626 1.21546 0.87872 0.98329 0.89191 0.90704 1.22135 1.01640 1.03008 0.95279 1.48485 1.24986 1.21842 1.40435 1.20009 0.79987 0.83072 0.83206 1.90698 1.73744 1.22954 1.51086 1.23516 1.00845 1.06221 0.99179 1.85412 1.20374 1.25845 1.51632 1.22843 1.11324 1.09809 1.24398 0.91011 1.24992 0.96743 0.94842 0.96985 1.70016 1.24122 1.14909 1.41160 0.86171 0.79850 0.78844 0.80656 1.20242 1.20712 1.19707 1.23043 0.96262 0.86978 0.98827 0.89922 0.90255 0.90259 0.76669 0.93078 0.89265 0.83488 0.89833 0.89991 0.92687 0.91961 0.90820 0.89517 0.89510 0.92146 0.91503 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.39 36.01 0.37 -0.16 16 2 C 0.02 0.20 7.33 -82.10 -0.60 -0.40 16 3 N -0.37 -3.82 12.07 33.43 0.40 -3.41 16 4 O 0.10 0.84 11.20 17.18 0.19 1.03 16 5 C -0.04 -0.24 12.26 29.74 0.36 0.12 16 6 C -0.20 -1.40 5.84 -104.42 -0.61 -2.01 16 7 C 0.13 0.78 6.04 -4.98 -0.03 0.75 16 8 N -0.67 -4.26 6.40 -105.61 -0.68 -4.94 16 9 C 0.07 0.55 3.40 -65.45 -0.22 0.33 16 10 H 0.10 0.70 7.83 -51.93 -0.41 0.29 16 11 C -0.11 -0.89 6.18 -24.89 -0.15 -1.04 16 12 C 0.13 1.52 3.45 -66.94 -0.23 1.29 16 13 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 14 C -0.16 -1.91 9.11 37.16 0.34 -1.57 16 15 N -0.62 -8.43 3.06 -162.87 -0.50 -8.93 16 16 C 0.55 10.29 7.66 -10.98 -0.08 10.20 16 17 O -0.51 -11.52 14.89 5.56 0.08 -11.43 16 18 C -0.15 -2.95 5.16 36.01 0.19 -2.77 16 19 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 20 C -0.54 -15.09 9.50 30.94 0.29 -14.79 16 21 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 24 Si 0.92 21.18 29.55 -169.99 -5.02 16.15 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 C 0.07 0.72 6.29 -2.42 -0.02 0.71 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.43 7.76 -51.93 -0.40 0.03 16 32 H 0.22 0.46 8.06 -52.48 -0.42 0.04 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.44 8.09 -51.93 -0.42 0.02 16 35 H 0.35 2.20 7.79 -39.29 -0.31 1.89 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.63 7.85 -51.93 -0.41 0.22 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 1.11 6.87 -51.93 -0.36 0.76 16 41 H 0.09 1.61 7.85 -51.92 -0.41 1.21 16 42 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.07 0.60 7.75 -51.93 -0.40 0.20 16 45 H 0.08 0.75 7.48 -51.93 -0.39 0.36 16 LS Contribution 388.97 15.07 5.86 5.86 Total: -1.00 -35.18 388.97 -8.47 -43.65 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.85 Total: -1.59 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -0.49 Total: -7.36 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: -0.04 Total: -42.51 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.28 Total: -10.40 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.18 -8.47 -43.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331962024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.856 kcal (2) G-P(sol) polarization free energy of solvation -35.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds