Wall clock time and date at job start Tue Mar 31 2020 22:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30178 * 126.80606 * 2 1 4 4 O 1.20924 * 111.60789 * 180.25707 * 3 2 1 5 5 C 1.34040 * 111.56178 * 359.74557 * 4 3 2 6 6 C 1.35449 * 106.45246 * 0.02562 * 5 4 3 7 7 C 1.50697 * 128.00968 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47090 * 260.02483 * 7 6 5 9 9 C 1.46901 * 111.00039 * 180.02562 * 8 7 6 10 10 H 1.08996 * 110.88685 * 328.87640 * 9 8 7 11 11 C 1.55156 * 111.00026 * 204.99946 * 9 8 7 12 12 C 1.54329 * 102.94072 * 206.42044 * 11 9 8 13 13 H 1.09000 * 109.88522 * 262.77914 * 12 11 9 14 14 C 1.53007 * 110.01206 * 141.68304 * 12 11 9 15 15 N 1.47025 * 107.26778 * 22.19637 * 12 11 9 16 16 C 1.34774 * 125.64574 * 181.02230 * 15 12 11 17 17 O 1.21279 * 120.00472 * 359.97438 * 16 15 12 18 18 C 1.50706 * 120.00020 * 180.02562 * 16 15 12 19 19 S 1.81002 * 109.47200 * 179.97438 * 18 16 15 20 20 C 1.76198 * 99.99878 * 179.97438 * 19 18 16 21 21 H 1.08006 * 120.00031 * 359.97438 * 20 19 18 22 22 C 1.38801 * 120.00096 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99737 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99933 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47409 * 89.99815 * 24 22 20 26 26 H 1.48504 * 109.46732 * 209.99538 * 24 22 20 27 27 H 1.48503 * 109.47095 * 329.99265 * 24 22 20 28 28 C 1.47419 * 108.70349 * 1.28347 * 15 12 11 29 29 H 1.09004 * 109.46644 * 270.16798 * 1 2 3 30 30 H 1.09003 * 109.46940 * 30.16229 * 1 2 3 31 31 H 1.08993 * 109.47325 * 150.16363 * 1 2 3 32 32 H 1.08006 * 126.77174 * 180.02562 * 5 4 3 33 33 H 1.09001 * 109.47025 * 140.02601 * 7 6 5 34 34 H 1.08997 * 109.47053 * 20.02281 * 7 6 5 35 35 H 1.00902 * 110.99953 * 303.95265 * 8 7 6 36 36 H 1.08998 * 110.72240 * 88.06517 * 11 9 8 37 37 H 1.08999 * 110.87618 * 324.85366 * 11 9 8 38 38 H 1.09005 * 109.46876 * 300.66343 * 14 12 11 39 39 H 1.08995 * 109.46800 * 60.66080 * 14 12 11 40 40 H 1.08997 * 109.47253 * 180.66568 * 14 12 11 41 41 H 1.09001 * 109.46953 * 299.99667 * 18 16 15 42 42 H 1.09000 * 109.47318 * 59.99264 * 18 16 15 43 43 H 0.97001 * 119.99701 * 180.02562 * 23 22 20 44 44 H 1.09006 * 110.36824 * 94.48688 * 28 15 12 45 45 H 1.08998 * 110.37021 * 216.80393 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0050 5 6 3.6024 -0.6069 -0.0036 6 6 2.3539 -1.1321 0.0026 7 6 1.9590 -2.5864 0.0060 8 7 1.5930 -2.9976 -1.3560 9 6 1.2009 -4.4129 -1.3911 10 1 1.7403 -4.9844 -0.6359 11 6 1.4180 -5.0151 -2.8045 12 6 0.3863 -6.1618 -2.8537 13 1 0.8701 -7.1066 -2.6058 14 6 -0.2362 -6.2465 -4.2488 15 7 -0.6533 -5.8566 -1.8599 16 6 -1.7244 -6.6260 -1.5821 17 8 -1.8913 -7.6703 -2.1757 18 6 -2.7154 -6.1881 -0.5345 19 16 -4.0307 -7.4237 -0.3943 20 6 -5.0170 -6.6793 0.8618 21 1 -4.7212 -5.7334 1.2910 22 6 -6.1735 -7.3091 1.3004 23 7 -6.5337 -8.4621 0.7776 24 14 -7.2195 -6.5196 2.6315 25 1 -8.2353 -5.6364 2.0042 26 1 -7.9021 -7.5785 3.4177 27 1 -6.3528 -5.7163 3.5308 28 6 -0.3334 -4.5665 -1.2222 29 1 -0.3633 0.0030 1.0277 30 1 -0.3633 0.8886 -0.5164 31 1 -0.3633 -0.8914 -0.5112 32 1 4.5339 -1.1535 -0.0068 33 1 1.1067 -2.7299 0.6702 34 1 2.7971 -3.1896 0.3548 35 1 0.8608 -2.4105 -1.7265 36 1 2.4313 -5.4034 -2.9068 37 1 1.2099 -4.2757 -3.5778 38 1 -0.7247 -5.3015 -4.4867 39 1 0.5438 -6.4473 -4.9831 40 1 -0.9714 -7.0510 -4.2704 41 1 -2.2085 -6.0861 0.4251 42 1 -3.1471 -5.2292 -0.8210 43 1 -7.3422 -8.9021 1.0838 44 1 -0.8563 -3.7539 -1.7267 45 1 -0.5978 -4.5900 -0.1650 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331962024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:18 Heat of formation + Delta-G solvation = 2.774545 kcal Electronic energy + Delta-G solvation = -26635.385612 eV Core-core repulsion = 22781.349011 eV Total energy + Delta-G solvation = -3854.036601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.85983 -41.27597 -39.02925 -37.08005 -35.12139 -34.60185 -33.35068 -32.99078 -30.60754 -30.13877 -29.58530 -27.68201 -26.87218 -26.40876 -23.30437 -22.44441 -22.24187 -21.78900 -20.36465 -19.50289 -18.53746 -18.43592 -18.11034 -17.42399 -16.89761 -16.72003 -16.27103 -15.97460 -15.81103 -15.64776 -15.06437 -14.60483 -14.45102 -14.32945 -14.19403 -14.14093 -13.87615 -13.76875 -13.54834 -13.39673 -13.31150 -13.18088 -13.10002 -12.94168 -12.90306 -12.59348 -12.32483 -11.93243 -11.87522 -11.74488 -11.64526 -11.15841 -10.91559 -10.81392 -10.42683 -10.29797 -9.74017 -9.40130 -8.69577 -8.36214 -6.14867 0.63845 1.21425 1.24714 1.41361 1.44097 1.54720 1.57356 2.06166 2.25742 2.46380 2.98036 3.06852 3.25383 3.33715 3.54665 3.63339 3.65001 3.91472 4.01048 4.06874 4.12134 4.17832 4.23809 4.29192 4.39661 4.44727 4.56793 4.60692 4.63107 4.67275 4.73603 4.76142 4.82543 4.90650 4.98991 5.01029 5.08060 5.18251 5.25929 5.32235 5.39715 5.50862 5.95971 6.17945 6.31062 6.41251 7.04932 7.13894 7.38582 8.73055 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010476 B = 0.002657 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.057876 B =10535.141290 C =12836.223741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.012 3.988 3 N -0.405 5.405 4 O 0.082 5.918 5 C -0.028 4.028 6 C -0.209 4.209 7 C 0.136 3.864 8 N -0.664 5.664 9 C 0.090 3.910 10 H 0.106 0.894 11 C -0.099 4.099 12 C 0.128 3.872 13 H 0.066 0.934 14 C -0.158 4.158 15 N -0.610 5.610 16 C 0.546 3.454 17 O -0.561 6.561 18 C -0.120 4.120 19 S -0.150 6.150 20 C -0.545 4.545 21 H 0.082 0.918 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.257 1.257 28 C 0.065 3.935 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.255 0.745 33 H 0.052 0.948 34 H 0.105 0.895 35 H 0.347 0.653 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.032 0.968 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.271 0.729 44 H 0.080 0.920 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.478 16.861 -2.639 29.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.147 4.147 3 N -0.114 5.114 4 O 0.020 5.980 5 C -0.110 4.110 6 C -0.214 4.214 7 C 0.008 3.992 8 N -0.295 5.295 9 C -0.021 4.021 10 H 0.124 0.876 11 C -0.137 4.137 12 C 0.025 3.975 13 H 0.084 0.916 14 C -0.216 4.216 15 N -0.345 5.345 16 C 0.333 3.667 17 O -0.440 6.440 18 C -0.271 4.271 19 S 0.077 5.923 20 C -0.693 4.693 21 H 0.100 0.900 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.181 1.181 28 C -0.060 4.060 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.271 0.729 33 H 0.070 0.930 34 H 0.123 0.877 35 H 0.167 0.833 36 H 0.122 0.878 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.051 0.949 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 23.523 16.355 -3.690 28.887 hybrid contribution -1.858 0.400 1.661 2.524 sum 21.666 16.756 -2.028 27.464 Atomic orbital electron populations 1.20266 0.85147 1.04338 1.04001 1.23973 0.99836 0.88913 1.01987 1.73870 0.90215 1.25551 1.21776 1.84787 1.21065 1.24556 1.67572 1.26580 1.02058 0.82484 0.99861 1.21297 0.92480 0.97228 1.10386 1.20224 1.01522 0.87847 0.89648 1.60611 1.45743 1.01923 1.21230 1.22730 0.90918 0.89875 0.98556 0.87581 1.22656 0.98465 0.95437 0.97160 1.21798 0.87846 0.99796 0.88107 0.91561 1.22088 1.01492 1.01553 0.96507 1.48408 1.23477 1.22287 1.40296 1.19743 0.81058 0.83063 0.82787 1.90681 1.75246 1.25254 1.52771 1.23308 0.98858 1.04009 1.00895 1.85606 1.24080 1.30305 1.52338 1.23172 1.11659 1.10121 1.24311 0.89953 1.26134 0.98161 0.95286 0.99556 1.70185 1.24850 1.16726 1.43000 0.84955 0.77846 0.77912 0.77285 1.19314 1.20317 1.18068 1.23423 0.98566 0.85106 0.98891 0.89637 0.90677 0.88880 0.72924 0.93021 0.87662 0.83319 0.87791 0.89200 0.92351 0.89349 0.94902 0.87724 0.87935 0.91974 0.90185 0.90101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.39 71.24 0.74 -0.23 16 2 C 0.01 0.19 7.33 43.58 0.32 0.51 16 3 N -0.41 -8.13 12.07 -49.54 -0.60 -8.73 16 4 O 0.08 1.33 11.20 71.63 0.80 2.13 16 5 C -0.03 -0.26 12.26 67.17 0.82 0.56 16 6 C -0.21 -2.37 5.84 -19.74 -0.12 -2.49 16 7 C 0.14 1.09 6.04 85.56 0.52 1.60 16 8 N -0.66 -5.81 6.40 -488.03 -3.12 -8.93 16 9 C 0.09 0.98 3.40 46.38 0.16 1.14 16 10 H 0.11 1.06 7.83 -2.39 -0.02 1.04 16 11 C -0.10 -1.18 6.18 31.78 0.20 -0.98 16 12 C 0.13 2.68 3.45 45.34 0.16 2.83 16 13 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 14 C -0.16 -3.60 9.11 71.98 0.66 -2.95 16 15 N -0.61 -15.75 3.06 -787.60 -2.41 -18.16 16 16 C 0.55 20.56 7.66 87.66 0.67 21.23 16 17 O -0.56 -26.37 14.89 -3.02 -0.05 -26.42 16 18 C -0.12 -4.78 5.16 71.24 0.37 -4.41 16 19 S -0.15 -8.37 20.57 -56.49 -1.16 -9.54 16 20 C -0.54 -30.90 9.50 67.95 0.65 -30.25 16 21 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 22 C 0.01 0.76 5.49 84.86 0.47 1.23 16 23 N -0.91 -55.85 13.22 21.65 0.29 -55.57 16 24 Si 1.00 43.16 29.55 68.60 2.03 45.19 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 27 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 28 C 0.06 1.06 6.29 86.93 0.55 1.61 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.09 0.81 7.76 -2.39 -0.02 0.80 16 32 H 0.25 0.02 8.06 -2.91 -0.02 0.00 16 33 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.11 0.55 8.09 -2.39 -0.02 0.53 16 35 H 0.35 3.13 7.79 -89.69 -0.70 2.43 16 36 H 0.10 0.92 8.14 -2.39 -0.02 0.91 16 37 H 0.09 1.00 7.85 -2.39 -0.02 0.99 16 38 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.03 1.02 6.87 -2.39 -0.02 1.00 16 41 H 0.10 3.77 7.85 -2.39 -0.02 3.75 16 42 H 0.10 3.74 8.14 -2.40 -0.02 3.72 16 43 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.08 1.17 7.75 -2.38 -0.02 1.15 16 45 H 0.08 1.31 7.48 -2.39 -0.02 1.30 16 Total: -1.00 -80.86 388.97 2.22 -78.63 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.30 Total: 11.99 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: 6.15 Total: -10.59 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -5.85 Total: -91.39 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: 0.76 Total: -24.29 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.54 kcal Total: -80.86 2.22 -78.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331962024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.409 kcal (2) G-P(sol) polarization free energy of solvation -80.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds