Wall clock time and date at job start Tue Mar 31 2020 22:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47224 * 235.43771 * 3 2 1 5 5 H 1.09002 * 109.47528 * 54.99794 * 4 3 2 6 6 O 1.45205 * 109.46848 * 295.00215 * 4 3 2 7 7 C 1.34750 * 117.00363 * 90.00362 * 6 4 3 8 8 O 1.21531 * 119.99734 * 359.97438 * 7 6 4 9 9 C 1.47287 * 120.00334 * 180.02562 * 7 6 4 10 10 C 1.41343 * 126.42421 * 359.97075 * 9 7 6 11 11 N 1.30429 * 108.00976 * 180.02562 * 10 9 7 12 12 N 1.39926 * 108.92424 * 359.97438 * 11 10 9 13 13 C 1.46491 * 125.74841 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.46957 * 90.02368 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.34227 * 108.51030 * 0.26454 * 12 11 10 23 23 C 1.50694 * 126.29821 * 179.73832 * 22 12 11 24 24 C 1.50695 * 109.47315 * 175.00388 * 4 3 2 25 25 C 1.38224 * 119.62426 * 124.72581 * 24 4 3 26 26 C 1.38628 * 119.16522 * 179.75358 * 25 24 4 27 27 C 1.38669 * 118.41835 * 0.50961 * 26 25 24 28 28 C 1.38183 * 119.16353 * 359.73422 * 27 26 25 29 29 N 1.31854 * 119.61710 * 304.99931 * 24 4 3 30 30 H 4.44644 * 5.63334 * 180.02562 * 4 1 2 31 31 H 1.08995 * 109.47086 * 115.43738 * 3 2 1 32 32 H 1.08998 * 109.47282 * 355.43695 * 3 2 1 33 33 H 1.08004 * 125.99586 * 359.97438 * 10 9 7 34 34 H 1.09004 * 109.47166 * 330.02634 * 13 12 11 35 35 H 1.08994 * 109.47507 * 210.02340 * 13 12 11 36 36 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.47303 * 89.99922 * 23 22 12 38 38 H 1.09004 * 109.47706 * 210.00193 * 23 22 12 39 39 H 1.09000 * 109.47395 * 329.99807 * 23 22 12 40 40 H 1.08008 * 120.41686 * 359.97438 * 25 24 4 41 41 H 1.08004 * 120.78799 * 180.26136 * 26 25 24 42 42 H 1.08008 * 120.41795 * 179.70764 * 27 26 25 43 43 H 1.07999 * 119.61588 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.8192 1.1879 5 1 2.7212 0.4316 2.1094 6 8 2.7708 2.2091 1.0186 7 6 1.5830 2.5821 1.5339 8 8 0.8874 1.7680 2.1087 9 6 1.1270 3.9762 1.3996 10 6 1.8220 5.0287 0.7614 11 7 1.0933 6.1066 0.8525 12 7 -0.0852 5.8008 1.5421 13 6 -1.1646 6.7416 1.8513 14 6 -2.1699 6.7392 0.7286 15 1 -2.0200 6.1004 -0.1292 16 6 -3.2844 7.5480 0.7994 17 7 -3.4672 8.3257 1.8441 18 14 -4.5344 7.5393 -0.5887 19 1 -5.0928 6.1719 -0.7434 20 1 -5.6311 8.4895 -0.2731 21 1 -3.8729 7.9499 -1.8533 22 6 -0.0573 4.5016 1.8783 23 6 -1.1234 3.7531 2.6359 24 6 4.6576 0.7190 1.2596 25 6 5.4199 1.8720 1.2625 26 6 6.8005 1.7689 1.3339 27 6 7.3658 0.5039 1.3892 28 6 6.5399 -0.6039 1.3770 29 7 5.2296 -0.4677 1.3133 30 1 -1.0501 -0.0003 -0.0001 31 1 3.0091 0.4422 -0.9280 32 1 3.0098 -1.0236 0.0818 33 1 2.7874 4.9537 0.2831 34 1 -0.7513 7.7437 1.9667 35 1 -1.6540 6.4416 2.7778 36 1 -4.2511 8.8949 1.8937 37 1 -1.8423 3.3333 1.9323 38 1 -0.6642 2.9481 3.2098 39 1 -1.6350 4.4363 3.3139 40 1 4.9457 2.8412 1.2134 41 1 7.4212 2.6528 1.3422 42 1 8.4382 0.3860 1.4407 43 1 6.9724 -1.5925 1.4202 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341861030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:47 Heat of formation + Delta-G solvation = 75.942621 kcal Electronic energy + Delta-G solvation = -28199.750437 eV Core-core repulsion = 24213.442690 eV Total energy + Delta-G solvation = -3986.307747 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.01851 -40.61317 -39.55531 -36.46060 -34.35809 -33.90658 -32.78682 -32.23947 -32.06922 -31.23730 -29.47874 -27.67567 -26.77900 -25.25712 -23.83887 -23.58323 -22.59590 -21.48843 -20.25651 -19.00870 -18.20010 -17.55614 -17.39684 -16.82680 -16.32492 -16.15052 -15.78380 -15.59805 -15.06967 -14.67395 -14.47583 -14.39343 -13.98112 -13.85315 -13.53837 -13.36253 -13.02184 -12.95463 -12.65895 -12.51445 -12.16708 -12.06145 -11.85692 -11.69691 -11.55338 -11.21283 -11.15414 -10.90072 -10.45557 -10.33825 -10.17645 -10.04744 -10.02124 -9.98306 -9.76401 -9.63018 -9.19970 -8.73917 -8.66980 -8.08280 -6.36998 -4.45110 0.78224 0.99913 1.92068 2.58139 2.70225 2.97827 3.05419 3.17989 3.22268 3.24128 3.35545 3.50300 3.66706 4.02064 4.21570 4.37718 4.57356 4.62289 4.80116 4.87988 4.95337 4.99438 5.03765 5.12456 5.16915 5.25359 5.40069 5.51837 5.58311 5.68892 5.70560 5.81063 5.92861 5.97527 6.02898 6.15177 6.34940 6.36559 6.39812 6.69826 6.77477 6.85519 7.10983 7.50223 7.63999 7.69642 7.72999 7.84375 8.17439 8.33142 8.59823 9.21946 10.71211 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019072 B = 0.002580 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.783052 B =10848.559436 C =11630.593576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.202 4.202 3 C -0.011 4.011 4 C 0.151 3.849 5 H 0.108 0.892 6 O -0.349 6.349 7 C 0.552 3.448 8 O -0.514 6.514 9 C -0.315 4.315 10 C 0.078 3.922 11 N -0.296 5.296 12 N -0.310 5.310 13 C 0.251 3.749 14 C -0.542 4.542 15 H 0.065 0.935 16 C 0.068 3.932 17 N -0.889 5.889 18 Si 0.908 3.092 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.273 1.273 22 C 0.173 3.827 23 C -0.095 4.095 24 C 0.127 3.873 25 C -0.146 4.146 26 C -0.075 4.075 27 C -0.175 4.175 28 C 0.101 3.899 29 N -0.477 5.477 30 H 0.214 0.786 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.184 0.816 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.270 0.730 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.148 0.852 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.600 -15.477 -0.079 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.202 4.202 3 C -0.048 4.048 4 C 0.095 3.905 5 H 0.126 0.874 6 O -0.266 6.266 7 C 0.399 3.601 8 O -0.403 6.403 9 C -0.329 4.329 10 C -0.109 4.109 11 N -0.116 5.116 12 N -0.087 5.087 13 C 0.134 3.866 14 C -0.580 4.580 15 H 0.083 0.917 16 C -0.136 4.136 17 N -0.526 5.526 18 Si 0.735 3.265 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.199 1.199 22 C 0.035 3.965 23 C -0.153 4.153 24 C -0.010 4.010 25 C -0.166 4.166 26 C -0.101 4.101 27 C -0.194 4.194 28 C -0.057 4.057 29 N -0.187 5.187 30 H 0.231 0.769 31 H 0.109 0.891 32 H 0.127 0.873 33 H 0.200 0.800 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.166 0.834 41 H 0.155 0.845 42 H 0.153 0.847 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 16.551 -14.914 -0.091 22.279 hybrid contribution -0.201 0.011 -0.556 0.591 sum 16.349 -14.903 -0.647 22.132 Atomic orbital electron populations 1.24762 0.95787 0.99506 0.99137 1.22553 0.94018 1.01755 1.01889 1.18946 0.85862 1.01589 0.98379 1.20891 0.88926 0.80038 1.00643 0.87437 1.86517 1.38188 1.28498 1.73434 1.19981 0.78085 0.87546 0.74524 1.90783 1.54754 1.53073 1.41649 1.18779 1.00164 0.92268 1.21657 1.23895 0.99444 0.89517 0.98057 1.77209 0.94625 1.23495 1.16247 1.49411 1.15031 1.07341 1.36868 1.19896 0.81108 0.87744 0.97856 1.21196 1.05791 1.26073 1.04941 0.91661 1.24919 0.97781 0.94447 0.96443 1.69902 1.29026 1.24996 1.28714 0.86375 0.80132 0.78240 0.81753 1.19830 1.20840 1.19855 1.21430 0.94808 0.85838 0.94439 1.20612 0.95507 0.99589 0.99617 1.20684 0.94617 0.89172 0.96508 1.22055 0.94162 1.00792 0.99553 1.21671 0.94953 0.98084 0.95368 1.22184 1.01545 0.93668 1.02041 1.22688 0.88285 0.99214 0.95464 1.67210 1.13066 1.26148 1.12295 0.76930 0.89054 0.87275 0.79959 0.92335 0.92464 0.92003 0.89554 0.88847 0.90542 0.83424 0.84512 0.84712 0.82446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 18.31 29.55 0.54 -1.96 16 2 C -0.20 -2.92 11.24 -37.12 -0.42 -3.34 16 3 C -0.01 -0.13 5.34 -29.52 -0.16 -0.29 16 4 C 0.15 1.92 2.73 -27.89 -0.08 1.85 16 5 H 0.11 1.50 7.16 -51.93 -0.37 1.13 16 6 O -0.35 -4.98 8.14 -40.63 -0.33 -5.31 16 7 C 0.55 9.29 7.20 34.41 0.25 9.54 16 8 O -0.51 -9.17 11.87 -19.29 -0.23 -9.40 16 9 C -0.32 -5.79 6.13 -105.08 -0.64 -6.44 16 10 C 0.08 1.40 11.87 -16.97 -0.20 1.19 16 11 N -0.30 -6.33 12.50 30.87 0.39 -5.95 16 12 N -0.31 -6.89 3.56 -57.77 -0.21 -7.09 16 13 C 0.25 6.12 5.97 -5.20 -0.03 6.09 16 14 C -0.54 -14.36 9.39 -34.44 -0.32 -14.69 16 15 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 16 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 17 N -0.89 -24.25 13.29 55.43 0.74 -23.51 16 18 Si 0.91 20.58 29.54 -169.99 -5.02 15.56 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 C 0.17 3.43 7.01 -81.59 -0.57 2.86 16 23 C -0.10 -1.64 9.56 36.00 0.34 -1.30 16 24 C 0.13 1.44 6.18 -82.59 -0.51 0.93 16 25 C -0.15 -1.45 9.42 -39.44 -0.37 -1.82 16 26 C -0.07 -0.58 10.18 -39.28 -0.40 -0.98 16 27 C -0.17 -1.20 10.11 -39.44 -0.40 -1.59 16 28 C 0.10 0.81 11.18 -17.55 -0.20 0.61 16 29 N -0.48 -5.09 9.78 -9.48 -0.09 -5.19 16 30 H 0.21 2.50 7.80 -54.09 -0.42 2.08 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.11 1.17 7.80 -51.93 -0.41 0.77 16 33 H 0.18 2.51 8.06 -52.48 -0.42 2.08 16 34 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 35 H 0.06 1.38 7.00 -51.93 -0.36 1.01 16 36 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.09 1.51 6.52 -51.93 -0.34 1.18 16 39 H 0.08 1.28 7.04 -51.93 -0.37 0.92 16 40 H 0.15 1.45 7.00 -52.48 -0.37 1.08 16 41 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 42 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 43 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 380.36 15.07 5.73 5.73 Total: -1.00 -30.96 380.36 -7.43 -38.39 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.14 Total: 4.41 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -3.26 Total: -7.65 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.82 Total: -41.74 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.56 Total: -14.71 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.96 -7.43 -38.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341861030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.332 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds