Wall clock time and date at job start Tue Mar 31 2020 22:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47224 * 235.43771 * 3 2 1 5 5 H 1.09002 * 109.47528 * 54.99794 * 4 3 2 6 6 O 1.45205 * 109.46848 * 295.00215 * 4 3 2 7 7 C 1.34750 * 117.00363 * 90.00362 * 6 4 3 8 8 O 1.21531 * 119.99734 * 359.97438 * 7 6 4 9 9 C 1.47287 * 120.00334 * 180.02562 * 7 6 4 10 10 C 1.41343 * 126.42421 * 359.97075 * 9 7 6 11 11 N 1.30429 * 108.00976 * 180.02562 * 10 9 7 12 12 N 1.39926 * 108.92424 * 359.97438 * 11 10 9 13 13 C 1.46491 * 125.74841 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.46957 * 90.02368 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.34227 * 108.51030 * 0.26454 * 12 11 10 23 23 C 1.50694 * 126.29821 * 179.73832 * 22 12 11 24 24 C 1.50695 * 109.47315 * 175.00388 * 4 3 2 25 25 C 1.38224 * 119.62426 * 124.72581 * 24 4 3 26 26 C 1.38628 * 119.16522 * 179.75358 * 25 24 4 27 27 C 1.38669 * 118.41835 * 0.50961 * 26 25 24 28 28 C 1.38183 * 119.16353 * 359.73422 * 27 26 25 29 29 N 1.31854 * 119.61710 * 304.99931 * 24 4 3 30 30 H 4.44644 * 5.63334 * 180.02562 * 4 1 2 31 31 H 1.08995 * 109.47086 * 115.43738 * 3 2 1 32 32 H 1.08998 * 109.47282 * 355.43695 * 3 2 1 33 33 H 1.08004 * 125.99586 * 359.97438 * 10 9 7 34 34 H 1.09004 * 109.47166 * 330.02634 * 13 12 11 35 35 H 1.08994 * 109.47507 * 210.02340 * 13 12 11 36 36 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.47303 * 89.99922 * 23 22 12 38 38 H 1.09004 * 109.47706 * 210.00193 * 23 22 12 39 39 H 1.09000 * 109.47395 * 329.99807 * 23 22 12 40 40 H 1.08008 * 120.41686 * 359.97438 * 25 24 4 41 41 H 1.08004 * 120.78799 * 180.26136 * 26 25 24 42 42 H 1.08008 * 120.41795 * 179.70764 * 27 26 25 43 43 H 1.07999 * 119.61588 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.8192 1.1879 5 1 2.7212 0.4316 2.1094 6 8 2.7708 2.2091 1.0186 7 6 1.5830 2.5821 1.5339 8 8 0.8874 1.7680 2.1087 9 6 1.1270 3.9762 1.3996 10 6 1.8220 5.0287 0.7614 11 7 1.0933 6.1066 0.8525 12 7 -0.0852 5.8008 1.5421 13 6 -1.1646 6.7416 1.8513 14 6 -2.1699 6.7392 0.7286 15 1 -2.0200 6.1004 -0.1292 16 6 -3.2844 7.5480 0.7994 17 7 -3.4672 8.3257 1.8441 18 14 -4.5344 7.5393 -0.5887 19 1 -5.0928 6.1719 -0.7434 20 1 -5.6311 8.4895 -0.2731 21 1 -3.8729 7.9499 -1.8533 22 6 -0.0573 4.5016 1.8783 23 6 -1.1234 3.7531 2.6359 24 6 4.6576 0.7190 1.2596 25 6 5.4199 1.8720 1.2625 26 6 6.8005 1.7689 1.3339 27 6 7.3658 0.5039 1.3892 28 6 6.5399 -0.6039 1.3770 29 7 5.2296 -0.4677 1.3133 30 1 -1.0501 -0.0003 -0.0001 31 1 3.0091 0.4422 -0.9280 32 1 3.0098 -1.0236 0.0818 33 1 2.7874 4.9537 0.2831 34 1 -0.7513 7.7437 1.9667 35 1 -1.6540 6.4416 2.7778 36 1 -4.2511 8.8949 1.8937 37 1 -1.8423 3.3333 1.9323 38 1 -0.6642 2.9481 3.2098 39 1 -1.6350 4.4363 3.3139 40 1 4.9457 2.8412 1.2134 41 1 7.4212 2.6528 1.3422 42 1 8.4382 0.3860 1.4407 43 1 6.9724 -1.5925 1.4202 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341861030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:47 Heat of formation + Delta-G solvation = 60.012413 kcal Electronic energy + Delta-G solvation = -28200.441222 eV Core-core repulsion = 24213.442690 eV Total energy + Delta-G solvation = -3986.998532 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.45138 -41.58080 -40.63119 -37.67942 -35.85575 -35.35264 -33.90274 -33.50358 -32.98433 -32.76634 -30.38969 -29.37790 -28.35824 -26.25576 -25.39421 -24.46479 -23.85221 -22.50036 -21.63169 -20.52492 -19.25543 -18.96024 -18.75901 -18.26852 -17.35801 -17.20623 -16.85364 -16.66706 -16.40170 -16.14368 -15.95988 -15.40081 -15.19147 -14.88479 -14.75156 -14.38928 -14.20155 -14.15927 -13.94243 -13.78720 -13.71697 -13.60040 -13.15112 -13.01321 -12.95373 -12.69633 -12.49648 -12.35461 -12.31289 -11.89526 -11.85156 -11.33219 -11.07697 -10.99081 -10.77257 -10.76174 -10.37006 -10.32924 -9.91077 -9.65056 -8.38635 -6.54673 0.12470 0.37977 0.45126 1.19376 1.32879 1.38393 1.39290 1.48434 1.79662 1.89287 1.95442 2.26876 2.32299 2.83587 2.94064 3.13476 3.50363 3.66374 3.76265 3.80627 3.92924 4.01075 4.03939 4.12376 4.17235 4.28081 4.34256 4.45175 4.57609 4.61936 4.70406 4.74500 4.79271 4.89093 4.92193 4.98853 5.10602 5.12982 5.21402 5.32105 5.47312 5.48488 5.61603 5.73347 5.79415 5.96769 6.53144 6.72838 6.75221 6.89922 6.98013 7.16325 8.69218 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019072 B = 0.002580 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.783052 B =10848.559436 C =11630.593576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.219 4.219 3 C -0.008 4.008 4 C 0.155 3.845 5 H 0.090 0.910 6 O -0.340 6.340 7 C 0.558 3.442 8 O -0.525 6.525 9 C -0.317 4.317 10 C 0.096 3.904 11 N -0.334 5.334 12 N -0.333 5.333 13 C 0.266 3.734 14 C -0.557 4.557 15 H 0.052 0.948 16 C 0.026 3.974 17 N -0.915 5.915 18 Si 0.969 3.031 19 H -0.266 1.266 20 H -0.273 1.273 21 H -0.274 1.274 22 C 0.162 3.838 23 C -0.090 4.090 24 C 0.107 3.893 25 C -0.161 4.161 26 C -0.076 4.076 27 C -0.163 4.163 28 C 0.093 3.907 29 N -0.499 5.499 30 H 0.230 0.770 31 H 0.100 0.900 32 H 0.122 0.878 33 H 0.224 0.776 34 H 0.034 0.966 35 H 0.055 0.945 36 H 0.275 0.725 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.144 0.856 41 H 0.162 0.838 42 H 0.170 0.830 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.559 -16.774 -0.851 25.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.219 4.219 3 C -0.045 4.045 4 C 0.099 3.901 5 H 0.108 0.892 6 O -0.257 6.257 7 C 0.404 3.596 8 O -0.415 6.415 9 C -0.331 4.331 10 C -0.091 4.091 11 N -0.153 5.153 12 N -0.110 5.110 13 C 0.148 3.852 14 C -0.595 4.595 15 H 0.070 0.930 16 C -0.176 4.176 17 N -0.553 5.553 18 Si 0.793 3.207 19 H -0.191 1.191 20 H -0.198 1.198 21 H -0.199 1.199 22 C 0.025 3.975 23 C -0.147 4.147 24 C -0.029 4.029 25 C -0.180 4.180 26 C -0.102 4.102 27 C -0.183 4.183 28 C -0.065 4.065 29 N -0.209 5.209 30 H 0.246 0.754 31 H 0.118 0.882 32 H 0.140 0.860 33 H 0.240 0.760 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.095 0.905 40 H 0.162 0.838 41 H 0.180 0.820 42 H 0.187 0.813 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 18.527 -16.228 -0.861 24.644 hybrid contribution -0.606 0.292 -0.298 0.736 sum 17.920 -15.936 -1.158 24.009 Atomic orbital electron populations 1.25384 0.96729 0.99612 0.99229 1.23197 0.95049 1.01770 1.01890 1.19035 0.84614 1.02324 0.98524 1.20919 0.90446 0.78663 1.00035 0.89208 1.86484 1.36670 1.29831 1.72682 1.19706 0.78678 0.86807 0.74406 1.90777 1.55345 1.53247 1.42119 1.18984 0.99719 0.93264 1.21092 1.24538 1.00063 0.88161 0.96366 1.77164 0.95040 1.25349 1.17742 1.49159 1.15292 1.07836 1.38663 1.19441 0.81317 0.87195 0.97238 1.21347 1.06774 1.26199 1.05147 0.92954 1.25696 0.99381 0.93883 0.98623 1.69983 1.29713 1.25440 1.30173 0.85436 0.77957 0.78653 0.78680 1.19069 1.19792 1.19935 1.21905 0.95926 0.85231 0.94442 1.20634 0.95057 0.99561 0.99495 1.20444 0.93555 0.90113 0.98812 1.22123 0.95396 1.00124 1.00392 1.22021 0.94182 0.99651 0.94297 1.22585 1.03192 0.92760 0.99729 1.23261 0.87504 1.01093 0.94599 1.67164 1.14650 1.25969 1.13151 0.75371 0.88182 0.86015 0.75984 0.94790 0.92721 0.91620 0.89314 0.87783 0.90510 0.83833 0.81995 0.81298 0.79728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.47 18.31 74.32 1.36 -4.11 16 2 C -0.22 -6.25 11.24 31.12 0.35 -5.90 16 3 C -0.01 -0.20 5.34 28.79 0.15 -0.04 16 4 C 0.16 3.87 2.73 29.85 0.08 3.95 16 5 H 0.09 2.54 7.16 -2.39 -0.02 2.52 16 6 O -0.34 -9.43 8.14 -56.61 -0.46 -9.89 16 7 C 0.56 18.47 7.20 70.20 0.51 18.97 16 8 O -0.52 -18.62 11.87 19.74 0.23 -18.38 16 9 C -0.32 -11.53 6.13 -20.16 -0.12 -11.65 16 10 C 0.10 3.33 11.87 85.67 1.02 4.35 16 11 N -0.33 -14.38 12.50 -56.25 -0.70 -15.08 16 12 N -0.33 -15.13 3.56 -336.68 -1.20 -16.33 16 13 C 0.27 13.46 5.97 85.64 0.51 13.97 16 14 C -0.56 -30.15 9.39 25.60 0.24 -29.91 16 15 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 16 C 0.03 1.38 5.46 84.66 0.46 1.84 16 17 N -0.92 -50.47 13.29 21.45 0.28 -50.19 16 18 Si 0.97 42.12 29.54 68.60 2.03 44.15 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 22 C 0.16 6.47 7.01 42.16 0.30 6.77 16 23 C -0.09 -3.12 9.56 71.23 0.68 -2.44 16 24 C 0.11 2.30 6.18 42.55 0.26 2.56 16 25 C -0.16 -2.94 9.42 22.36 0.21 -2.73 16 26 C -0.08 -0.95 10.18 22.47 0.23 -0.72 16 27 C -0.16 -1.64 10.11 22.36 0.23 -1.41 16 28 C 0.09 1.22 11.18 84.67 0.95 2.17 16 29 N -0.50 -9.87 9.78 -183.89 -1.80 -11.67 16 30 H 0.23 5.29 7.80 -4.41 -0.03 5.26 16 31 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.12 2.53 7.80 -2.39 -0.02 2.51 16 33 H 0.22 5.60 8.06 -2.91 -0.02 5.58 16 34 H 0.03 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.06 2.74 7.00 -2.39 -0.02 2.72 16 36 H 0.27 14.21 8.31 -92.70 -0.77 13.43 16 37 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.10 3.36 6.52 -2.38 -0.02 3.35 16 39 H 0.08 2.63 7.04 -2.39 -0.02 2.62 16 40 H 0.14 2.63 7.00 -2.91 -0.02 2.61 16 41 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 42 H 0.17 0.53 8.06 -2.91 -0.02 0.50 16 43 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -67.56 380.36 6.83 -60.73 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 1.04 Total: 21.01 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 7.41 Total: -4.33 kcal Atomic # 7 Polarization: -89.86 SS G_CDS: -3.42 Total: -93.28 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.23 Total: -28.27 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -67.56 6.83 -60.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341861030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.738 kcal (2) G-P(sol) polarization free energy of solvation -67.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds