Wall clock time and date at job start Tue Mar 31 2020 22:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34484 * 126.84028 * 2 1 4 4 N 1.36446 * 108.86098 * 180.25310 * 3 2 1 5 5 H 0.96996 * 124.84869 * 179.72955 * 4 3 2 6 6 C 1.34662 * 110.29488 * 359.74763 * 4 3 2 7 7 C 1.36769 * 108.39905 * 359.97438 * 6 4 3 8 8 C 1.47260 * 126.94247 * 179.97438 * 7 6 4 9 9 O 1.21629 * 119.99972 * 180.02562 * 8 7 6 10 10 N 1.34770 * 119.99918 * 0.02784 * 8 7 6 11 11 C 1.46506 * 120.00207 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47390 * 180.02562 * 11 10 8 13 13 C 1.53006 * 109.47159 * 179.97438 * 12 11 10 14 14 H 1.09007 * 109.46427 * 55.00086 * 13 12 11 15 15 C 1.53001 * 109.47065 * 174.99654 * 13 12 11 16 16 N 1.46497 * 109.47036 * 294.99799 * 13 12 11 17 17 C 1.34777 * 119.99525 * 154.99621 * 16 13 12 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 13 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 13 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46793 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47282 * 119.99523 * 25 23 21 28 28 H 1.48500 * 109.47237 * 240.00020 * 25 23 21 29 29 H 1.09002 * 109.47556 * 270.15136 * 1 2 3 30 30 H 1.08998 * 109.46797 * 30.14730 * 1 2 3 31 31 H 1.09000 * 109.47757 * 150.14836 * 1 2 3 32 32 H 1.08007 * 125.56590 * 0.03442 * 3 2 1 33 33 H 1.08001 * 125.80040 * 180.02562 * 6 4 3 34 34 H 0.97004 * 120.00257 * 359.97438 * 10 8 7 35 35 H 1.08994 * 109.47234 * 59.99284 * 11 10 8 36 36 H 1.09008 * 109.46320 * 299.99951 * 11 10 8 37 37 H 1.09002 * 109.47208 * 59.99941 * 12 11 10 38 38 H 1.09003 * 109.47291 * 299.99777 * 12 11 10 39 39 H 1.08998 * 109.46617 * 180.02562 * 15 13 12 40 40 H 1.09003 * 109.47371 * 300.00160 * 15 13 12 41 41 H 1.09002 * 109.46839 * 60.00194 * 15 13 12 42 42 H 0.97000 * 120.00580 * 335.00367 * 16 13 12 43 43 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 44 44 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 45 45 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6551 -0.0057 5 1 4.3840 1.2412 -0.0106 6 6 3.6656 -0.6904 -0.0039 7 6 2.3863 -1.1742 0.0037 8 6 1.9748 -2.5881 0.0076 9 8 0.7935 -2.8777 0.0139 10 7 2.9072 -3.5613 0.0041 11 6 2.4978 -4.9680 0.0074 12 6 3.7403 -5.8607 0.0031 13 6 3.3127 -7.3298 0.0071 14 1 2.6414 -7.5151 -0.8315 15 6 4.5494 -8.2212 -0.1230 16 7 2.6215 -7.6337 1.2625 17 6 1.7363 -8.6486 1.3157 18 8 1.5122 -9.3105 0.3245 19 6 1.0298 -8.9652 2.6087 20 16 -0.0793 -10.3739 2.3610 21 6 -0.7531 -10.5218 3.9823 22 1 -0.4410 -9.8415 4.7609 23 6 -1.6858 -11.5118 4.2587 24 7 -2.0674 -12.3400 3.3094 25 14 -2.4006 -11.6681 5.9774 26 1 -1.8125 -10.6243 6.8549 27 1 -3.8741 -11.4932 5.9185 28 1 -2.0830 -13.0113 6.5254 29 1 -0.3634 0.0027 1.0277 30 1 -0.3633 0.8887 -0.5161 31 1 -0.3634 -0.8913 -0.5115 32 1 1.9868 2.1058 0.0005 33 1 4.5663 -1.2862 -0.0070 34 1 3.8493 -3.3303 -0.0013 35 1 1.8987 -5.1741 -0.8794 36 1 1.9071 -5.1723 0.9005 37 1 4.3390 -5.6545 0.8903 38 1 4.3314 -5.6565 -0.8897 39 1 4.2447 -9.2678 -0.1205 40 1 5.0637 -7.9951 -1.0571 41 1 5.2207 -8.0359 0.7155 42 1 2.8009 -7.1046 2.0555 43 1 1.7658 -9.2125 3.3738 44 1 0.4508 -8.0987 2.9281 45 1 -2.7189 -13.0322 3.5026 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355154255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:57 Heat of formation + Delta-G solvation = -44.880446 kcal Electronic energy + Delta-G solvation = -25669.801664 eV Core-core repulsion = 21813.698587 eV Total energy + Delta-G solvation = -3856.103077 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.54694 -39.59750 -39.05286 -36.51572 -34.55257 -32.73332 -32.38397 -31.88599 -30.62253 -28.86023 -28.36256 -26.84340 -25.44148 -24.30736 -22.51232 -21.53072 -20.32865 -20.21553 -19.52508 -18.70024 -17.78618 -16.56993 -16.54297 -16.10361 -15.76837 -15.47559 -14.85432 -14.77388 -14.73890 -14.36449 -14.10395 -13.89188 -13.59889 -13.46548 -13.40228 -13.15424 -12.90381 -12.81820 -12.61358 -12.59537 -12.09886 -11.89633 -11.69747 -11.66158 -11.45212 -11.05002 -11.02296 -10.96946 -10.71234 -9.97038 -9.75849 -9.33070 -9.29036 -9.03448 -8.94548 -8.84544 -8.66115 -8.17880 -6.44546 -6.17361 -3.87207 1.41783 2.05938 2.76503 3.05064 3.08547 3.15547 3.25154 3.31783 3.36811 3.38577 3.76548 4.24760 4.39361 4.53145 4.60064 4.69929 4.75886 4.80854 5.05425 5.17830 5.20639 5.25145 5.28243 5.35872 5.41894 5.45283 5.60030 5.66499 5.68834 5.71411 5.80993 5.89076 5.95047 5.99161 6.04839 6.19031 6.21184 6.28087 6.45733 6.52015 6.70589 7.00287 7.38733 7.64466 7.75823 8.20329 8.40037 8.67466 9.28162 10.90138 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012953 B = 0.002017 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.201774 B =13880.947974 C =15461.991407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.107 4.107 3 C -0.028 4.028 4 N -0.550 5.550 5 H 0.417 0.583 6 C 0.044 3.956 7 C -0.226 4.226 8 C 0.585 3.415 9 O -0.535 6.535 10 N -0.733 5.733 11 C 0.119 3.881 12 C -0.137 4.137 13 C 0.146 3.854 14 H 0.091 0.909 15 C -0.162 4.162 16 N -0.735 5.735 17 C 0.534 3.466 18 O -0.517 6.517 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.534 4.534 22 H 0.073 0.927 23 C 0.072 3.928 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.169 0.831 33 H 0.171 0.829 34 H 0.394 0.606 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.680 28.092 -7.104 34.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C -0.155 4.155 4 N -0.144 5.144 5 H 0.254 0.746 6 C -0.092 4.092 7 C -0.237 4.237 8 C 0.373 3.627 9 O -0.412 6.412 10 N -0.385 5.385 11 C -0.005 4.005 12 C -0.175 4.175 13 C 0.041 3.959 14 H 0.109 0.891 15 C -0.221 4.221 16 N -0.390 5.390 17 C 0.320 3.680 18 O -0.391 6.391 19 C -0.305 4.305 20 S 0.166 5.834 21 C -0.682 4.682 22 H 0.091 0.909 23 C -0.137 4.137 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.186 0.814 33 H 0.188 0.812 34 H 0.228 0.772 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.231 0.769 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.396 26.709 -8.821 33.073 hybrid contribution 0.891 1.305 2.678 3.109 sum 18.287 28.014 -6.143 34.014 Atomic orbital electron populations 1.20220 0.89170 1.02722 1.02184 1.20612 0.95787 0.90312 1.04621 1.21603 0.82369 0.99305 1.12259 1.41480 1.08359 1.06661 1.57887 0.74633 1.21884 0.98406 0.83957 1.04984 1.20411 0.92719 0.92868 1.17675 1.17423 0.85447 0.84004 0.75812 1.90800 1.17155 1.83638 1.49608 1.45838 1.09293 1.06291 1.77047 1.21379 0.96790 0.78925 1.03365 1.22101 0.97622 0.94265 1.03510 1.20777 0.94347 0.92280 0.88512 0.89055 1.22172 0.97151 1.01236 1.01525 1.46120 1.44565 1.35464 1.12874 1.20288 0.78218 0.79155 0.90313 1.90698 1.63022 1.48703 1.36657 1.23539 1.03279 1.06473 0.97195 1.85380 1.48397 1.33112 1.16484 1.22913 1.29098 1.20031 0.96168 0.90901 1.24996 0.95676 0.94786 0.98206 1.70032 1.30642 1.17303 1.32335 0.86116 0.78790 0.78086 0.82498 1.19632 1.20560 1.20618 0.91658 0.92334 0.90179 0.81365 0.81221 0.77201 0.91119 0.90902 0.90726 0.89844 0.91452 0.91917 0.92583 0.76925 0.89303 0.89210 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 9.97 36.00 0.36 -0.47 16 2 C -0.11 -1.02 6.35 -102.54 -0.65 -1.67 16 3 C -0.03 -0.17 11.82 -16.83 -0.20 -0.37 16 4 N -0.55 -2.31 5.90 -12.85 -0.08 -2.39 16 5 H 0.42 0.26 8.96 -40.82 -0.37 -0.10 16 6 C 0.04 0.24 11.40 -16.84 -0.19 0.05 16 7 C -0.23 -2.18 6.29 -103.35 -0.65 -2.83 16 8 C 0.58 7.01 7.81 -12.60 -0.10 6.92 16 9 O -0.54 -8.82 15.32 5.25 0.08 -8.74 16 10 N -0.73 -6.27 5.55 -61.44 -0.34 -6.61 16 11 C 0.12 1.17 5.56 -4.04 -0.02 1.15 16 12 C -0.14 -0.98 4.87 -26.73 -0.13 -1.11 16 13 C 0.15 1.59 2.57 -67.93 -0.17 1.41 16 14 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 15 C -0.16 -1.63 9.48 37.16 0.35 -1.28 16 16 N -0.74 -9.56 4.53 -53.80 -0.24 -9.80 16 17 C 0.53 9.99 7.81 -10.98 -0.09 9.90 16 18 O -0.52 -11.73 15.53 5.55 0.09 -11.64 16 19 C -0.15 -3.18 6.16 36.01 0.22 -2.95 16 20 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 21 C -0.53 -15.50 9.50 30.94 0.29 -15.21 16 22 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.58 13.22 55.49 0.73 -25.85 16 25 Si 0.92 21.83 29.55 -169.99 -5.02 16.81 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.97 6.86 -51.93 -0.36 0.62 16 32 H 0.17 0.58 8.06 -52.48 -0.42 0.16 16 33 H 0.17 0.31 7.45 -52.49 -0.39 -0.08 16 34 H 0.39 1.94 7.42 -40.82 -0.30 1.64 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.86 7.75 -51.92 -0.40 0.46 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.40 4.10 8.60 -40.82 -0.35 3.75 16 43 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 44 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 45 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 396.80 15.07 5.98 5.98 Total: -1.00 -39.96 396.80 -8.85 -48.81 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.76 Total: 1.79 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -1.07 Total: -4.47 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.07 Total: -44.65 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.17 Total: -20.38 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -39.96 -8.85 -48.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355154255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.925 kcal (2) G-P(sol) polarization free energy of solvation -39.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds