Wall clock time and date at job start Tue Mar 31 2020 22:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34484 * 126.84028 * 2 1 4 4 N 1.36446 * 108.86098 * 180.25310 * 3 2 1 5 5 H 0.96996 * 124.84869 * 179.72955 * 4 3 2 6 6 C 1.34662 * 110.29488 * 359.74763 * 4 3 2 7 7 C 1.36769 * 108.39905 * 359.97438 * 6 4 3 8 8 C 1.47260 * 126.94247 * 179.97438 * 7 6 4 9 9 O 1.21629 * 119.99972 * 180.02562 * 8 7 6 10 10 N 1.34770 * 119.99918 * 0.02784 * 8 7 6 11 11 C 1.46506 * 120.00207 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47390 * 180.02562 * 11 10 8 13 13 C 1.53006 * 109.47159 * 179.97438 * 12 11 10 14 14 H 1.09007 * 109.46427 * 55.00086 * 13 12 11 15 15 C 1.53001 * 109.47065 * 174.99654 * 13 12 11 16 16 N 1.46497 * 109.47036 * 294.99799 * 13 12 11 17 17 C 1.34777 * 119.99525 * 154.99621 * 16 13 12 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 13 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 13 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46793 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47282 * 119.99523 * 25 23 21 28 28 H 1.48500 * 109.47237 * 240.00020 * 25 23 21 29 29 H 1.09002 * 109.47556 * 270.15136 * 1 2 3 30 30 H 1.08998 * 109.46797 * 30.14730 * 1 2 3 31 31 H 1.09000 * 109.47757 * 150.14836 * 1 2 3 32 32 H 1.08007 * 125.56590 * 0.03442 * 3 2 1 33 33 H 1.08001 * 125.80040 * 180.02562 * 6 4 3 34 34 H 0.97004 * 120.00257 * 359.97438 * 10 8 7 35 35 H 1.08994 * 109.47234 * 59.99284 * 11 10 8 36 36 H 1.09008 * 109.46320 * 299.99951 * 11 10 8 37 37 H 1.09002 * 109.47208 * 59.99941 * 12 11 10 38 38 H 1.09003 * 109.47291 * 299.99777 * 12 11 10 39 39 H 1.08998 * 109.46617 * 180.02562 * 15 13 12 40 40 H 1.09003 * 109.47371 * 300.00160 * 15 13 12 41 41 H 1.09002 * 109.46839 * 60.00194 * 15 13 12 42 42 H 0.97000 * 120.00580 * 335.00367 * 16 13 12 43 43 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 44 44 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 45 45 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6551 -0.0057 5 1 4.3840 1.2412 -0.0106 6 6 3.6656 -0.6904 -0.0039 7 6 2.3863 -1.1742 0.0037 8 6 1.9748 -2.5881 0.0076 9 8 0.7935 -2.8777 0.0139 10 7 2.9072 -3.5613 0.0041 11 6 2.4978 -4.9680 0.0074 12 6 3.7403 -5.8607 0.0031 13 6 3.3127 -7.3298 0.0071 14 1 2.6414 -7.5151 -0.8315 15 6 4.5494 -8.2212 -0.1230 16 7 2.6215 -7.6337 1.2625 17 6 1.7363 -8.6486 1.3157 18 8 1.5122 -9.3105 0.3245 19 6 1.0298 -8.9652 2.6087 20 16 -0.0793 -10.3739 2.3610 21 6 -0.7531 -10.5218 3.9823 22 1 -0.4410 -9.8415 4.7609 23 6 -1.6858 -11.5118 4.2587 24 7 -2.0674 -12.3400 3.3094 25 14 -2.4006 -11.6681 5.9774 26 1 -1.8125 -10.6243 6.8549 27 1 -3.8741 -11.4932 5.9185 28 1 -2.0830 -13.0113 6.5254 29 1 -0.3634 0.0027 1.0277 30 1 -0.3633 0.8887 -0.5161 31 1 -0.3634 -0.8913 -0.5115 32 1 1.9868 2.1058 0.0005 33 1 4.5663 -1.2862 -0.0070 34 1 3.8493 -3.3303 -0.0013 35 1 1.8987 -5.1741 -0.8794 36 1 1.9071 -5.1723 0.9005 37 1 4.3390 -5.6545 0.8903 38 1 4.3314 -5.6565 -0.8897 39 1 4.2447 -9.2678 -0.1205 40 1 5.0637 -7.9951 -1.0571 41 1 5.2207 -8.0359 0.7155 42 1 2.8009 -7.1046 2.0555 43 1 1.7658 -9.2125 3.3738 44 1 0.4508 -8.0987 2.9281 45 1 -2.7189 -13.0322 3.5026 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355154255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:56 Heat of formation + Delta-G solvation = -76.211271 kcal Electronic energy + Delta-G solvation = -25671.160270 eV Core-core repulsion = 21813.698587 eV Total energy + Delta-G solvation = -3857.461683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.05778 -40.83378 -40.03827 -37.60768 -35.55801 -34.59246 -33.32554 -33.08279 -31.40652 -30.08096 -29.30222 -27.66810 -27.44860 -25.07577 -23.26820 -22.53150 -21.59684 -20.85516 -20.22071 -19.80847 -19.14836 -17.93892 -17.48621 -17.06505 -16.88930 -16.69094 -16.43449 -16.29418 -15.90978 -15.31994 -14.94732 -14.81432 -14.71847 -14.51035 -14.34234 -14.29074 -14.07557 -13.85429 -13.60086 -13.29429 -13.27214 -13.16826 -13.00024 -12.91708 -12.59005 -12.43281 -12.38010 -12.26996 -11.88922 -11.70702 -11.16505 -10.93303 -10.87682 -10.28040 -10.18841 -10.05183 -9.50483 -9.16095 -8.67069 -8.35480 -6.13367 0.82300 1.26887 1.40608 1.46650 1.50945 1.58185 1.64374 2.23108 2.25882 2.33139 2.50966 2.60714 2.98434 3.32108 3.77288 3.85430 4.01955 4.03015 4.09821 4.13719 4.29007 4.33390 4.45731 4.46368 4.50116 4.53659 4.65520 4.75261 4.84453 4.88297 4.92080 4.92736 5.07346 5.15447 5.18193 5.33355 5.35923 5.41149 5.51121 5.58479 5.83434 5.98767 6.19290 6.53639 6.68591 6.77243 7.05685 7.28684 7.42491 8.74095 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012953 B = 0.002017 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.201774 B =13880.947974 C =15461.991407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.156 4.156 3 C -0.011 4.011 4 N -0.532 5.532 5 H 0.439 0.561 6 C 0.077 3.923 7 C -0.275 4.275 8 C 0.576 3.424 9 O -0.598 6.598 10 N -0.712 5.712 11 C 0.120 3.880 12 C -0.115 4.115 13 C 0.141 3.859 14 H 0.062 0.938 15 C -0.156 4.156 16 N -0.710 5.710 17 C 0.535 3.465 18 O -0.565 6.565 19 C -0.131 4.131 20 S -0.152 6.152 21 C -0.546 4.546 22 H 0.082 0.918 23 C 0.011 3.989 24 N -0.911 5.911 25 Si 1.000 3.000 26 H -0.257 1.257 27 H -0.274 1.274 28 H -0.272 1.272 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.198 0.802 33 H 0.215 0.785 34 H 0.417 0.583 35 H 0.042 0.958 36 H 0.049 0.951 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.029 0.971 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.414 0.586 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.580 31.174 -5.637 38.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.162 4.162 3 C -0.140 4.140 4 N -0.128 5.128 5 H 0.280 0.720 6 C -0.061 4.061 7 C -0.285 4.285 8 C 0.367 3.633 9 O -0.480 6.480 10 N -0.364 5.364 11 C -0.004 4.004 12 C -0.153 4.153 13 C 0.036 3.964 14 H 0.080 0.920 15 C -0.214 4.214 16 N -0.364 5.364 17 C 0.320 3.680 18 O -0.443 6.443 19 C -0.282 4.282 20 S 0.075 5.925 21 C -0.694 4.694 22 H 0.100 0.900 23 C -0.193 4.193 24 N -0.548 5.548 25 Si 0.822 3.178 26 H -0.181 1.181 27 H -0.200 1.200 28 H -0.197 1.197 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.214 0.786 33 H 0.231 0.769 34 H 0.254 0.746 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.125 0.875 38 H 0.133 0.867 39 H 0.048 0.952 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.251 0.749 43 H 0.129 0.871 44 H 0.121 0.879 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 21.415 29.869 -7.344 37.479 hybrid contribution -0.198 0.495 2.145 2.210 sum 21.217 30.364 -5.199 37.405 Atomic orbital electron populations 1.20095 0.90592 1.01861 1.01302 1.20812 0.95733 0.91976 1.07679 1.21913 0.82642 0.99634 1.09766 1.41548 1.08558 1.06663 1.55991 0.72000 1.22394 0.98082 0.84565 1.01103 1.20394 0.94872 0.91557 1.21681 1.17967 0.84974 0.85589 0.74793 1.90764 1.19822 1.84659 1.52778 1.45577 1.10034 1.05097 1.75734 1.21243 0.97853 0.80332 1.00965 1.21991 0.96468 0.90219 1.06643 1.21003 0.94022 0.95252 0.86127 0.91988 1.22113 0.96813 0.98506 1.03978 1.45911 1.42519 1.33298 1.14672 1.20003 0.78977 0.80136 0.88864 1.90685 1.64921 1.50892 1.37827 1.23390 1.02381 1.03380 0.99098 1.85549 1.51237 1.37761 1.17915 1.23236 1.29486 1.20495 0.96152 0.90034 1.26157 0.95906 0.94136 1.03122 1.70195 1.31425 1.18115 1.35032 0.84886 0.77839 0.78628 0.76461 1.18093 1.19975 1.19688 0.92670 0.90326 0.93775 0.78563 0.76890 0.74577 0.93959 0.93303 0.87464 0.86656 0.95188 0.89251 0.90344 0.74881 0.87097 0.87884 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.72 9.97 71.23 0.71 -1.01 16 2 C -0.16 -2.94 6.35 -18.51 -0.12 -3.06 16 3 C -0.01 -0.11 11.82 83.12 0.98 0.87 16 4 N -0.53 -2.23 5.90 -194.55 -1.15 -3.38 16 5 H 0.44 -1.72 8.96 -92.71 -0.83 -2.55 16 6 C 0.08 0.55 11.40 83.91 0.96 1.51 16 7 C -0.27 -5.05 6.29 -19.04 -0.12 -5.17 16 8 C 0.58 14.13 7.81 86.62 0.68 14.81 16 9 O -0.60 -21.53 15.32 -4.12 -0.06 -21.59 16 10 N -0.71 -11.11 5.55 -466.53 -2.59 -13.70 16 11 C 0.12 2.30 5.56 86.38 0.48 2.78 16 12 C -0.12 -1.27 4.87 30.59 0.15 -1.12 16 13 C 0.14 2.86 2.57 44.99 0.12 2.98 16 14 H 0.06 1.67 7.58 -2.38 -0.02 1.66 16 15 C -0.16 -2.79 9.48 71.98 0.68 -2.11 16 16 N -0.71 -17.79 4.53 -442.52 -2.00 -19.79 16 17 C 0.53 20.38 7.81 87.66 0.68 21.06 16 18 O -0.57 -26.95 15.53 -3.04 -0.05 -27.00 16 19 C -0.13 -5.45 6.16 71.24 0.44 -5.02 16 20 S -0.15 -8.74 20.57 -56.49 -1.16 -9.90 16 21 C -0.55 -32.22 9.50 67.95 0.65 -31.57 16 22 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 23 C 0.01 0.67 5.49 84.86 0.47 1.13 16 24 N -0.91 -57.40 13.22 21.65 0.29 -57.11 16 25 Si 1.00 44.95 29.55 68.60 2.03 46.98 16 26 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 28 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 31 H 0.04 1.23 6.86 -2.39 -0.02 1.21 16 32 H 0.20 0.67 8.06 -2.91 -0.02 0.64 16 33 H 0.21 -0.53 7.45 -2.91 -0.02 -0.55 16 34 H 0.42 2.48 7.42 -92.71 -0.69 1.79 16 35 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.05 1.17 7.75 -2.38 -0.02 1.16 16 37 H 0.11 0.60 8.14 -2.39 -0.02 0.59 16 38 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.41 7.61 8.60 -92.71 -0.80 6.81 16 43 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 44 H 0.10 3.99 8.14 -2.40 -0.02 3.97 16 45 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -97.36 396.80 0.77 -96.59 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -1.28 Total: 12.82 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 6.75 Total: -3.91 kcal Atomic # 7 Polarization: -88.53 SS G_CDS: -5.45 Total: -93.98 kcal Atomic # 8 Polarization: -48.48 SS G_CDS: -0.11 Total: -48.59 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.16 Total: -9.90 kcal Total: -97.36 0.77 -96.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355154255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.377 kcal (2) G-P(sol) polarization free energy of solvation -97.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds