Wall clock time and date at job start Tue Mar 31 2020 22:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34484 * 126.83594 * 2 1 4 4 N 1.36451 * 108.85593 * 180.25729 * 3 2 1 5 5 H 0.96995 * 124.84946 * 179.72928 * 4 3 2 6 6 C 1.34656 * 110.29570 * 359.75434 * 4 3 2 7 7 C 1.36768 * 108.39851 * 359.97438 * 6 4 3 8 8 C 1.47265 * 126.94165 * 179.97438 * 7 6 4 9 9 O 1.21623 * 120.00120 * 180.02562 * 8 7 6 10 10 N 1.34784 * 119.99864 * 0.03260 * 8 7 6 11 11 C 1.46494 * 119.99635 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47001 * 180.02562 * 11 10 8 13 13 H 1.09006 * 109.46701 * 305.00011 * 12 11 10 14 14 C 1.52995 * 109.47320 * 64.99504 * 12 11 10 15 15 C 1.53005 * 109.47344 * 185.00297 * 12 11 10 16 16 N 1.46500 * 109.47013 * 174.99961 * 15 12 11 17 17 C 1.34777 * 119.99823 * 179.97438 * 16 15 12 18 18 O 1.21279 * 119.99920 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00147 * 179.97438 * 17 16 15 20 20 S 1.80994 * 109.47093 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99830 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00403 * 359.97438 * 21 20 19 23 23 C 1.38806 * 119.99881 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00085 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99776 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.47154 * 90.00170 * 25 23 21 27 27 H 1.48503 * 109.47117 * 209.99788 * 25 23 21 28 28 H 1.48501 * 109.47390 * 330.00185 * 25 23 21 29 29 H 1.09001 * 109.46450 * 270.14399 * 1 2 3 30 30 H 1.09001 * 109.46994 * 30.13906 * 1 2 3 31 31 H 1.08994 * 109.47680 * 150.14499 * 1 2 3 32 32 H 1.08002 * 125.57152 * 0.04580 * 3 2 1 33 33 H 1.08006 * 125.79905 * 180.02562 * 6 4 3 34 34 H 0.96995 * 120.00015 * 359.72305 * 10 8 7 35 35 H 1.09005 * 109.47306 * 299.99972 * 11 10 8 36 36 H 1.09002 * 109.47518 * 60.00210 * 11 10 8 37 37 H 1.08995 * 109.47420 * 300.00608 * 14 12 11 38 38 H 1.09006 * 109.46819 * 60.00579 * 14 12 11 39 39 H 1.09008 * 109.47216 * 180.02562 * 14 12 11 40 40 H 1.09005 * 109.46652 * 294.99405 * 15 12 11 41 41 H 1.08990 * 109.47271 * 54.99354 * 15 12 11 42 42 H 0.96997 * 120.00203 * 359.97438 * 16 15 12 43 43 H 1.09005 * 109.46984 * 299.99662 * 19 17 16 44 44 H 1.09003 * 109.47074 * 59.99558 * 19 17 16 45 45 H 0.97002 * 120.00514 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6112 0.6552 -0.0058 5 1 4.3840 1.2412 -0.0108 6 6 3.6656 -0.6903 -0.0042 7 6 2.3863 -1.1741 0.0033 8 6 1.9748 -2.5881 0.0070 9 8 0.7936 -2.8776 0.0133 10 7 2.9073 -3.5613 0.0035 11 6 2.4979 -4.9678 0.0077 12 6 3.7404 -5.8607 0.0031 13 1 4.3753 -5.5953 -0.8423 14 6 4.5167 -5.6611 1.3062 15 6 3.3155 -7.3255 -0.1184 16 7 4.5057 -8.1705 -0.2429 17 6 4.3741 -9.5065 -0.3628 18 8 3.2704 -10.0091 -0.3672 19 6 5.5984 -10.3757 -0.4915 20 16 5.0957 -12.1085 -0.6350 21 6 6.6763 -12.8755 -0.7686 22 1 7.5724 -12.2732 -0.7471 23 6 6.7697 -14.2541 -0.9013 24 7 5.6776 -14.9883 -0.9270 25 14 8.4454 -15.0672 -1.0437 26 1 8.9445 -15.4131 0.3116 27 1 8.3283 -16.3032 -1.8584 28 1 9.3957 -14.1317 -1.6972 29 1 -0.3632 0.0026 1.0277 30 1 -0.3633 0.8887 -0.5160 31 1 -0.3634 -0.8912 -0.5115 32 1 1.9869 2.1059 0.0007 33 1 4.5664 -1.2862 -0.0074 34 1 3.8493 -3.3304 -0.0055 35 1 1.9077 -5.1718 0.9011 36 1 1.8983 -5.1745 -0.8788 37 1 4.8194 -4.6176 1.3927 38 1 3.8818 -5.9265 2.1516 39 1 5.4022 -6.2968 1.3027 40 1 2.7550 -7.6160 0.7703 41 1 2.6877 -7.4498 -1.0006 42 1 5.3885 -7.7685 -0.2391 43 1 6.1582 -10.0854 -1.3806 44 1 6.2268 -10.2510 0.3904 45 1 5.7428 -15.9516 -1.0201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357008311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:09 Heat of formation + Delta-G solvation = -45.612328 kcal Electronic energy + Delta-G solvation = -25232.332388 eV Core-core repulsion = 21376.197574 eV Total energy + Delta-G solvation = -3856.134814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.61750 -39.64128 -39.08849 -36.95355 -34.47374 -32.80920 -32.46328 -32.41134 -30.31549 -29.29506 -27.11258 -26.91824 -25.70511 -25.26327 -22.95778 -20.95711 -20.41140 -20.32145 -19.50464 -18.75613 -17.82113 -16.66590 -16.55827 -16.16764 -15.87411 -15.36886 -15.29049 -14.83578 -14.80255 -14.42740 -14.21748 -14.02280 -13.83989 -13.58762 -13.41536 -13.09176 -12.98834 -12.92610 -12.84103 -12.67740 -12.55207 -11.90262 -11.77224 -11.50971 -11.34710 -11.19715 -11.06246 -11.02331 -10.76250 -10.08922 -9.81378 -9.40558 -9.37050 -9.06917 -9.00224 -8.87953 -8.72743 -8.22916 -6.49567 -6.21344 -3.91933 1.34724 1.98910 2.69587 2.88489 3.11124 3.11942 3.22252 3.28529 3.29616 3.33444 3.73785 4.20569 4.33657 4.43911 4.48013 4.57123 4.61465 4.65704 4.97397 5.07739 5.13758 5.14783 5.18164 5.36312 5.37857 5.41822 5.49181 5.56843 5.60544 5.65235 5.70967 5.77071 5.88472 5.90344 5.91748 5.97388 6.13466 6.19088 6.37750 6.45364 6.60672 6.94120 7.29658 7.59552 7.70043 8.10055 8.35256 8.62203 9.23841 10.86075 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035203 B = 0.001479 C = 0.001433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.194456 B =18924.141136 C =19541.431812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.108 4.108 3 C -0.027 4.027 4 N -0.549 5.549 5 H 0.418 0.582 6 C 0.046 3.954 7 C -0.227 4.227 8 C 0.588 3.412 9 O -0.539 6.539 10 N -0.729 5.729 11 C 0.128 3.872 12 C -0.114 4.114 13 H 0.084 0.916 14 C -0.150 4.150 15 C 0.128 3.872 16 N -0.738 5.738 17 C 0.531 3.469 18 O -0.516 6.516 19 C -0.153 4.153 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.169 0.831 33 H 0.171 0.829 34 H 0.396 0.604 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.591 35.665 2.807 35.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.155 4.155 4 N -0.143 5.143 5 H 0.254 0.746 6 C -0.091 4.091 7 C -0.238 4.238 8 C 0.376 3.624 9 O -0.417 6.417 10 N -0.382 5.382 11 C 0.004 3.996 12 C -0.134 4.134 13 H 0.102 0.898 14 C -0.207 4.207 15 C 0.004 3.996 16 N -0.393 5.393 17 C 0.317 3.683 18 O -0.390 6.390 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.685 4.685 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.186 0.814 33 H 0.188 0.812 34 H 0.230 0.770 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.231 0.769 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.318 34.515 2.790 34.786 hybrid contribution 3.805 0.649 -0.079 3.861 sum 0.487 35.163 2.711 35.271 Atomic orbital electron populations 1.20209 0.89211 1.02693 1.02069 1.20591 0.95743 0.90303 1.04786 1.21612 0.82377 0.99323 1.12161 1.41495 1.08401 1.06686 1.57738 0.74563 1.21906 0.98450 0.83977 1.04746 1.20383 0.92715 0.92823 1.17896 1.17396 0.85358 0.83983 0.75651 1.90770 1.17191 1.83696 1.50036 1.45806 1.09443 1.06091 1.76821 1.21265 0.95951 0.79174 1.03179 1.21594 0.97205 0.94841 0.99720 0.89809 1.21890 1.00550 1.01459 0.96802 1.21173 0.88286 0.87461 1.02725 1.45965 1.09224 1.06749 1.77345 1.20302 0.91069 0.81640 0.75297 1.90713 1.27328 1.73231 1.47735 1.23527 0.98476 1.03595 1.04789 1.85424 1.11653 0.90614 1.95645 1.22870 0.92626 0.94646 1.58327 0.90945 1.24989 0.97775 0.96215 0.94574 1.70015 1.27502 1.06172 1.46544 0.86171 0.82353 0.78705 0.78274 1.20280 1.20743 1.19727 0.91750 0.92336 0.90235 0.81356 0.81205 0.77010 0.90844 0.90896 0.92625 0.91879 0.91958 0.91142 0.91209 0.76897 0.89264 0.89265 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 9.97 36.01 0.36 -0.35 16 2 C -0.11 -0.91 6.35 -102.54 -0.65 -1.57 16 3 C -0.03 -0.15 11.82 -16.82 -0.20 -0.35 16 4 N -0.55 -1.99 5.90 -12.85 -0.08 -2.06 16 5 H 0.42 0.08 8.96 -40.82 -0.37 -0.28 16 6 C 0.05 0.23 11.40 -16.85 -0.19 0.03 16 7 C -0.23 -1.97 6.29 -103.35 -0.65 -2.62 16 8 C 0.59 6.22 7.81 -12.59 -0.10 6.13 16 9 O -0.54 -7.82 15.32 5.26 0.08 -7.74 16 10 N -0.73 -5.48 5.27 -61.43 -0.32 -5.80 16 11 C 0.13 1.07 5.06 -4.04 -0.02 1.05 16 12 C -0.11 -0.81 2.46 -90.62 -0.22 -1.04 16 13 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 14 C -0.15 -0.94 8.94 37.15 0.33 -0.61 16 15 C 0.13 1.40 5.07 -4.04 -0.02 1.38 16 16 N -0.74 -9.24 5.28 -60.29 -0.32 -9.56 16 17 C 0.53 9.74 7.85 -10.99 -0.09 9.66 16 18 O -0.52 -11.74 15.86 5.56 0.09 -11.65 16 19 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 20 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 21 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 22 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 25 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.84 6.86 -51.93 -0.36 0.48 16 32 H 0.17 0.45 8.06 -52.49 -0.42 0.03 16 33 H 0.17 0.25 7.45 -52.48 -0.39 -0.14 16 34 H 0.40 1.79 6.61 -40.82 -0.27 1.52 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.26 7.19 -51.93 -0.37 -0.12 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.39 7.18 -51.92 -0.37 0.02 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.40 3.73 7.66 -40.82 -0.31 3.42 16 43 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 44 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 393.98 15.07 5.94 5.94 Total: -1.00 -39.19 393.98 -8.78 -47.97 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.64 Total: -0.09 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -1.03 Total: -4.04 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.02 Total: -42.85 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.17 Total: -19.39 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -39.19 -8.78 -47.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357008311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.357 kcal (2) G-P(sol) polarization free energy of solvation -39.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds