Wall clock time and date at job start Tue Mar 31 2020 22:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34484 * 126.83594 * 2 1 4 4 N 1.36451 * 108.85593 * 180.25729 * 3 2 1 5 5 H 0.96995 * 124.84946 * 179.72928 * 4 3 2 6 6 C 1.34656 * 110.29570 * 359.75434 * 4 3 2 7 7 C 1.36768 * 108.39851 * 359.97438 * 6 4 3 8 8 C 1.47265 * 126.94165 * 179.97438 * 7 6 4 9 9 O 1.21623 * 120.00120 * 180.02562 * 8 7 6 10 10 N 1.34784 * 119.99864 * 0.03260 * 8 7 6 11 11 C 1.46494 * 119.99635 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47001 * 180.02562 * 11 10 8 13 13 H 1.09006 * 109.46701 * 305.00011 * 12 11 10 14 14 C 1.52995 * 109.47320 * 64.99504 * 12 11 10 15 15 C 1.53005 * 109.47344 * 185.00297 * 12 11 10 16 16 N 1.46500 * 109.47013 * 174.99961 * 15 12 11 17 17 C 1.34777 * 119.99823 * 179.97438 * 16 15 12 18 18 O 1.21279 * 119.99920 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00147 * 179.97438 * 17 16 15 20 20 S 1.80994 * 109.47093 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99830 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00403 * 359.97438 * 21 20 19 23 23 C 1.38806 * 119.99881 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00085 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99776 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.47154 * 90.00170 * 25 23 21 27 27 H 1.48503 * 109.47117 * 209.99788 * 25 23 21 28 28 H 1.48501 * 109.47390 * 330.00185 * 25 23 21 29 29 H 1.09001 * 109.46450 * 270.14399 * 1 2 3 30 30 H 1.09001 * 109.46994 * 30.13906 * 1 2 3 31 31 H 1.08994 * 109.47680 * 150.14499 * 1 2 3 32 32 H 1.08002 * 125.57152 * 0.04580 * 3 2 1 33 33 H 1.08006 * 125.79905 * 180.02562 * 6 4 3 34 34 H 0.96995 * 120.00015 * 359.72305 * 10 8 7 35 35 H 1.09005 * 109.47306 * 299.99972 * 11 10 8 36 36 H 1.09002 * 109.47518 * 60.00210 * 11 10 8 37 37 H 1.08995 * 109.47420 * 300.00608 * 14 12 11 38 38 H 1.09006 * 109.46819 * 60.00579 * 14 12 11 39 39 H 1.09008 * 109.47216 * 180.02562 * 14 12 11 40 40 H 1.09005 * 109.46652 * 294.99405 * 15 12 11 41 41 H 1.08990 * 109.47271 * 54.99354 * 15 12 11 42 42 H 0.96997 * 120.00203 * 359.97438 * 16 15 12 43 43 H 1.09005 * 109.46984 * 299.99662 * 19 17 16 44 44 H 1.09003 * 109.47074 * 59.99558 * 19 17 16 45 45 H 0.97002 * 120.00514 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6112 0.6552 -0.0058 5 1 4.3840 1.2412 -0.0108 6 6 3.6656 -0.6903 -0.0042 7 6 2.3863 -1.1741 0.0033 8 6 1.9748 -2.5881 0.0070 9 8 0.7936 -2.8776 0.0133 10 7 2.9073 -3.5613 0.0035 11 6 2.4979 -4.9678 0.0077 12 6 3.7404 -5.8607 0.0031 13 1 4.3753 -5.5953 -0.8423 14 6 4.5167 -5.6611 1.3062 15 6 3.3155 -7.3255 -0.1184 16 7 4.5057 -8.1705 -0.2429 17 6 4.3741 -9.5065 -0.3628 18 8 3.2704 -10.0091 -0.3672 19 6 5.5984 -10.3757 -0.4915 20 16 5.0957 -12.1085 -0.6350 21 6 6.6763 -12.8755 -0.7686 22 1 7.5724 -12.2732 -0.7471 23 6 6.7697 -14.2541 -0.9013 24 7 5.6776 -14.9883 -0.9270 25 14 8.4454 -15.0672 -1.0437 26 1 8.9445 -15.4131 0.3116 27 1 8.3283 -16.3032 -1.8584 28 1 9.3957 -14.1317 -1.6972 29 1 -0.3632 0.0026 1.0277 30 1 -0.3633 0.8887 -0.5160 31 1 -0.3634 -0.8912 -0.5115 32 1 1.9869 2.1059 0.0007 33 1 4.5664 -1.2862 -0.0074 34 1 3.8493 -3.3304 -0.0055 35 1 1.9077 -5.1718 0.9011 36 1 1.8983 -5.1745 -0.8788 37 1 4.8194 -4.6176 1.3927 38 1 3.8818 -5.9265 2.1516 39 1 5.4022 -6.2968 1.3027 40 1 2.7550 -7.6160 0.7703 41 1 2.6877 -7.4498 -1.0006 42 1 5.3885 -7.7685 -0.2391 43 1 6.1582 -10.0854 -1.3806 44 1 6.2268 -10.2510 0.3904 45 1 5.7428 -15.9516 -1.0201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357008311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:09 Heat of formation + Delta-G solvation = -75.750872 kcal Electronic energy + Delta-G solvation = -25233.639293 eV Core-core repulsion = 21376.197574 eV Total energy + Delta-G solvation = -3857.441719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.05865 -40.74020 -40.10262 -37.88722 -35.51055 -34.57153 -33.43007 -33.31436 -31.10865 -30.47944 -27.83220 -27.62118 -27.43476 -26.38507 -23.60064 -21.82695 -21.60033 -20.87259 -20.18734 -19.73403 -19.13663 -17.80260 -17.54732 -17.14899 -16.86814 -16.80327 -16.43824 -16.32102 -15.68136 -15.61396 -14.98950 -14.87770 -14.76311 -14.51601 -14.38311 -14.19907 -13.95563 -13.85450 -13.58979 -13.57503 -13.30883 -13.24492 -13.15063 -12.87667 -12.60892 -12.32081 -12.15715 -12.12548 -11.84161 -11.71089 -11.12969 -11.00728 -10.86604 -10.25201 -10.13859 -10.08954 -9.50185 -9.15686 -8.65446 -8.33195 -6.11449 0.82492 1.28281 1.43767 1.48540 1.51724 1.58542 1.63826 2.10858 2.28767 2.41646 2.55318 2.61408 3.01094 3.34005 3.71909 3.81428 3.88841 4.02263 4.04424 4.11782 4.32654 4.33394 4.42607 4.48460 4.53303 4.53577 4.69596 4.79287 4.83454 4.89999 4.91574 4.93272 4.99419 5.17143 5.19142 5.33410 5.36352 5.43209 5.46889 5.52220 5.84458 5.99449 6.21162 6.53296 6.67308 6.75784 7.08059 7.27727 7.40951 8.76042 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035203 B = 0.001479 C = 0.001433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.194456 B =18924.141136 C =19541.431812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.154 4.154 3 C -0.013 4.013 4 N -0.534 5.534 5 H 0.438 0.562 6 C 0.073 3.927 7 C -0.273 4.273 8 C 0.580 3.420 9 O -0.594 6.594 10 N -0.711 5.711 11 C 0.131 3.869 12 C -0.093 4.093 13 H 0.109 0.891 14 C -0.150 4.150 15 C 0.126 3.874 16 N -0.707 5.707 17 C 0.532 3.468 18 O -0.569 6.569 19 C -0.128 4.128 20 S -0.157 6.157 21 C -0.546 4.546 22 H 0.085 0.915 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 0.999 3.001 26 H -0.268 1.268 27 H -0.279 1.279 28 H -0.257 1.257 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.197 0.803 33 H 0.211 0.789 34 H 0.414 0.586 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.418 0.582 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.714 38.646 2.831 38.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.160 4.160 3 C -0.141 4.141 4 N -0.129 5.129 5 H 0.279 0.721 6 C -0.065 4.065 7 C -0.283 4.283 8 C 0.371 3.629 9 O -0.476 6.476 10 N -0.364 5.364 11 C 0.007 3.993 12 C -0.112 4.112 13 H 0.127 0.873 14 C -0.207 4.207 15 C 0.001 3.999 16 N -0.361 5.361 17 C 0.317 3.683 18 O -0.447 6.447 19 C -0.279 4.279 20 S 0.070 5.930 21 C -0.694 4.694 22 H 0.103 0.897 23 C -0.192 4.192 24 N -0.549 5.549 25 Si 0.821 3.179 26 H -0.193 1.193 27 H -0.204 1.204 28 H -0.181 1.181 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.214 0.786 33 H 0.227 0.773 34 H 0.252 0.748 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.256 0.744 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.083 37.586 2.820 37.707 hybrid contribution 2.447 -0.096 -0.070 2.450 sum 3.530 37.491 2.751 37.757 Atomic orbital electron populations 1.20095 0.90307 1.01934 1.01386 1.20815 0.95846 0.91774 1.07536 1.21938 0.82605 0.99728 1.09855 1.41565 1.08640 1.06668 1.55995 0.72112 1.22382 0.98203 0.84596 1.01350 1.20396 0.94703 0.91722 1.21528 1.17860 0.84931 0.85345 0.74772 1.90738 1.19499 1.84580 1.52804 1.45577 1.10037 1.05070 1.75726 1.21118 0.96374 0.80097 1.01746 1.21412 0.96785 0.91443 1.01553 0.87269 1.21915 1.00189 1.03273 0.95306 1.21276 0.87451 0.89522 1.01633 1.45636 1.10997 1.04771 1.74743 1.20102 0.89670 0.83247 0.75239 1.90705 1.28888 1.74554 1.50574 1.23363 0.99432 0.98281 1.06845 1.85647 1.13824 0.97440 1.96040 1.23218 0.92693 0.95315 1.58149 0.89727 1.26139 1.02289 0.96934 0.93821 1.70188 1.30364 1.06530 1.47784 0.84944 0.76781 0.77546 0.78635 1.19323 1.20444 1.18051 0.92500 0.90447 0.93509 0.78617 0.77274 0.74848 0.92468 0.92517 0.90129 0.93272 0.91223 0.92485 0.92414 0.74420 0.87012 0.86975 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 9.97 71.24 0.71 -0.74 16 2 C -0.15 -2.55 6.35 -18.52 -0.12 -2.67 16 3 C -0.01 -0.11 11.82 83.11 0.98 0.87 16 4 N -0.53 -1.80 5.90 -194.55 -1.15 -2.95 16 5 H 0.44 -1.89 8.96 -92.71 -0.83 -2.72 16 6 C 0.07 0.46 11.40 83.92 0.96 1.42 16 7 C -0.27 -4.47 6.29 -19.04 -0.12 -4.59 16 8 C 0.58 12.53 7.81 86.62 0.68 13.21 16 9 O -0.59 -18.73 15.32 -4.11 -0.06 -18.79 16 10 N -0.71 -9.78 5.27 -466.52 -2.46 -12.24 16 11 C 0.13 2.16 5.06 86.38 0.44 2.60 16 12 C -0.09 -1.12 2.46 -10.79 -0.03 -1.14 16 13 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 14 C -0.15 -1.41 8.94 71.98 0.64 -0.77 16 15 C 0.13 2.64 5.07 86.38 0.44 3.08 16 16 N -0.71 -16.29 5.28 -463.06 -2.45 -18.73 16 17 C 0.53 19.17 7.85 87.66 0.69 19.85 16 18 O -0.57 -26.60 15.86 -3.03 -0.05 -26.65 16 19 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 20 S -0.16 -8.69 20.57 -56.49 -1.16 -9.85 16 21 C -0.55 -30.95 9.50 67.96 0.65 -30.31 16 22 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 23 C 0.01 0.73 5.49 84.86 0.47 1.19 16 24 N -0.91 -56.17 13.22 21.65 0.29 -55.88 16 25 Si 1.00 43.25 29.55 68.60 2.03 45.27 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 27 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 28 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 1.13 6.86 -2.39 -0.02 1.11 16 32 H 0.20 0.40 8.06 -2.91 -0.02 0.37 16 33 H 0.21 -0.54 7.45 -2.91 -0.02 -0.56 16 34 H 0.41 2.34 6.61 -92.71 -0.61 1.73 16 35 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 0.39 7.19 -2.39 -0.02 0.38 16 38 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 39 H 0.07 0.59 7.18 -2.38 -0.02 0.58 16 40 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.42 6.26 7.66 -92.71 -0.71 5.55 16 43 H 0.11 3.80 8.14 -2.39 -0.02 3.79 16 44 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 45 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -92.64 393.98 0.69 -91.96 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -1.12 Total: 10.33 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 6.82 Total: -2.47 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -5.77 Total: -89.80 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -0.11 Total: -45.44 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -92.64 0.69 -91.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357008311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.205 kcal (2) G-P(sol) polarization free energy of solvation -92.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds