Wall clock time and date at job start Tue Mar 31 2020 22:06:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.35447 * 126.77919 * 2 1
4 4 C 1.41385 * 103.98440 * 179.97438 * 3 2 1
5 5 C 1.50703 * 126.80021 * 180.02562 * 4 3 2
6 6 N 1.46894 * 109.47322 * 95.00172 * 5 4 3
7 7 C 1.48530 * 110.99942 * 69.87074 * 6 5 4
8 8 C 1.54945 * 103.22676 * 200.28016 * 7 6 5
9 9 C 1.54593 * 102.92000 * 37.41473 * 8 7 6
10 10 H 1.08997 * 110.30915 * 219.12431 * 9 8 7
11 11 N 1.46510 * 110.30804 * 97.05806 * 9 8 7
12 12 C 1.34776 * 119.99846 * 86.45175 * 11 9 8
13 13 O 1.21282 * 119.99820 * 0.02562 * 12 11 9
14 14 C 1.50702 * 119.99828 * 179.97438 * 12 11 9
15 15 S 1.80999 * 109.46968 * 179.97438 * 14 12 11
16 16 C 1.76205 * 99.99892 * 180.02562 * 15 14 12
17 17 H 1.08002 * 119.99787 * 0.02562 * 16 15 14
18 18 C 1.38789 * 119.99797 * 180.02562 * 16 15 14
19 19 N 1.31628 * 120.00541 * 0.02562 * 18 16 15
20 20 Si 1.86802 * 119.99955 * 180.02562 * 18 16 15
21 21 H 1.48504 * 109.47061 * 59.99916 * 20 18 16
22 22 H 1.48502 * 109.47310 * 180.02562 * 20 18 16
23 23 H 1.48498 * 109.47146 * 300.00318 * 20 18 16
24 24 C 1.47911 * 110.99819 * 312.47467 * 6 5 4
25 25 H 1.09003 * 109.91410 * 26.49659 * 24 6 5
26 26 C 1.52997 * 109.91678 * 265.19684 * 24 6 5
27 27 N 1.30172 * 106.39687 * 0.02562 * 4 3 2
28 28 O 1.20924 * 111.60656 * 359.97438 * 27 4 3
29 29 H 1.08998 * 109.47530 * 89.99264 * 1 2 3
30 30 H 1.08998 * 109.47545 * 209.99762 * 1 2 3
31 31 H 1.09001 * 109.47073 * 329.99851 * 1 2 3
32 32 H 1.08001 * 128.00625 * 0.23336 * 3 2 1
33 33 H 1.08997 * 109.46546 * 215.00302 * 5 4 3
34 34 H 1.09003 * 109.46847 * 334.99631 * 5 4 3
35 35 H 1.08997 * 110.66786 * 318.71606 * 7 6 5
36 36 H 1.09001 * 110.66477 * 81.68251 * 7 6 5
37 37 H 1.09000 * 110.72265 * 155.77214 * 8 7 6
38 38 H 1.08995 * 110.72097 * 278.87762 * 8 7 6
39 39 H 0.97000 * 119.99686 * 266.45659 * 11 9 8
40 40 H 1.08999 * 109.47177 * 300.00545 * 14 12 11
41 41 H 1.09002 * 109.46697 * 60.00462 * 14 12 11
42 42 H 0.97003 * 120.00255 * 180.02562 * 19 18 16
43 43 H 1.08997 * 109.47179 * 61.45485 * 26 24 6
44 44 H 1.09004 * 109.46814 * 181.45297 * 26 24 6
45 45 H 1.08999 * 109.46969 * 301.45566 * 26 24 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3180 1.0849 0.0000
4 6 3.6214 0.5371 0.0006
5 6 4.9211 1.2998 0.0014
6 7 5.4039 1.4433 1.3813
7 6 5.8542 0.1370 1.9263
8 6 5.8123 0.3589 3.4592
9 6 4.5549 1.2386 3.6468
10 1 4.7342 1.9972 4.4087
11 7 3.4050 0.4095 4.0167
12 6 3.1815 0.1059 5.3107
13 8 3.9321 0.5194 6.1689
14 6 1.9983 -0.7463 5.6912
15 16 1.9718 -0.9748 7.4865
16 6 0.5317 -1.9775 7.6461
17 1 -0.0302 -2.2591 6.7678
18 6 0.1197 -2.4055 8.9004
19 7 0.8043 -2.0619 9.9709
20 14 -1.4067 -3.4691 9.0696
21 1 -1.2200 -4.7280 8.3044
22 1 -1.6310 -3.7886 10.5023
23 1 -2.5827 -2.7356 8.5364
24 6 4.3198 1.9018 2.2771
25 1 3.3532 1.5954 1.8772
26 6 4.3704 3.4243 2.4196
27 7 3.4763 -0.7565 0.0003
28 8 2.3094 -1.0738 0.0002
29 1 -0.3634 0.0001 -1.0276
30 1 -0.3634 -0.8900 0.5138
31 1 -0.3633 0.8900 0.5139
32 1 2.0345 2.1270 0.0035
33 1 5.6608 0.7577 -0.5878
34 1 4.7633 2.2870 -0.4329
35 1 5.1689 -0.6586 1.6339
36 1 6.8678 -0.0890 1.5953
37 1 5.7008 -0.5902 3.9834
38 1 6.7065 0.8822 3.7976
39 1 2.8046 0.0791 3.3303
40 1 1.0790 -0.2544 5.3735
41 1 2.0782 -1.7176 5.2028
42 1 0.5164 -2.3613 10.8475
43 1 4.2201 3.8858 1.4436
44 1 3.5851 3.7517 3.1010
45 1 5.3418 3.7201 2.8157
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001479697931.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:06:23
Heat of formation + Delta-G solvation = 33.145999 kcal
Electronic energy + Delta-G solvation = -27706.533273 eV
Core-core repulsion = 23853.813677 eV
Total energy + Delta-G solvation = -3852.719596 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-45.28788 -40.28433 -38.54338 -35.25234 -34.04182 -33.34139 -32.43490 -31.58608
-31.13106 -29.00365 -28.15825 -26.17350 -25.54151 -25.14529 -23.44217 -21.87153
-21.28465 -20.10123 -19.41391 -18.08079 -17.80344 -17.49278 -16.78362 -16.31837
-15.88291 -15.18973 -15.01676 -14.81126 -14.66620 -14.54689 -14.19051 -13.94614
-13.62710 -13.51435 -13.31752 -13.14229 -12.93154 -12.73389 -12.58829 -12.32361
-12.26498 -11.89527 -11.70437 -11.46073 -11.35342 -11.19808 -11.05455 -11.04434
-10.96172 -10.76859 -10.37082 -9.83191 -9.64695 -9.41972 -9.06994 -8.94754
-8.85491 -8.24836 -6.50594 -6.21998 -3.92779 1.12251 1.82445 2.77392
2.99853 3.07032 3.22757 3.26526 3.29503 3.55729 3.74269 3.87034
4.05979 4.19870 4.29304 4.52360 4.65486 4.80361 4.87930 4.93096
5.00504 5.00857 5.11433 5.12965 5.13597 5.18097 5.28016 5.30772
5.32756 5.48230 5.54100 5.57174 5.60062 5.69166 5.70168 5.80518
5.86860 5.98366 6.02800 6.07474 6.12108 6.40346 6.59488 6.74323
7.58423 7.66532 7.94013 8.34333 8.59584 9.23068 10.85370
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.012863 B = 0.003062 C = 0.002647
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2176.225872 B = 9141.522626 C =10575.883554
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 C -0.027 4.027
3 C -0.233 4.233
4 C -0.016 4.016
5 C 0.122 3.878
6 N -0.495 5.495
7 C 0.027 3.973
8 C -0.133 4.133
9 C 0.141 3.859
10 H 0.100 0.900
11 N -0.732 5.732
12 C 0.533 3.467
13 O -0.514 6.514
14 C -0.153 4.153
15 S -0.057 6.057
16 C -0.537 4.537
17 H 0.072 0.928
18 C 0.074 3.926
19 N -0.868 5.868
20 Si 0.918 3.082
21 H -0.274 1.274
22 H -0.283 1.283
23 H -0.274 1.274
24 C 0.045 3.955
25 H 0.072 0.928
26 C -0.132 4.132
27 N -0.353 5.353
28 O 0.099 5.901
29 H 0.088 0.912
30 H 0.087 0.913
31 H 0.093 0.907
32 H 0.171 0.829
33 H 0.093 0.907
34 H 0.100 0.900
35 H 0.057 0.943
36 H 0.084 0.916
37 H 0.079 0.921
38 H 0.083 0.917
39 H 0.392 0.608
40 H 0.088 0.912
41 H 0.088 0.912
42 H 0.269 0.731
43 H 0.056 0.944
44 H 0.061 0.939
45 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.392 8.763 -24.989 26.697
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.090 4.090
3 C -0.255 4.255
4 C -0.177 4.177
5 C -0.007 4.007
6 N -0.218 5.218
7 C -0.101 4.101
8 C -0.172 4.172
9 C 0.035 3.965
10 H 0.118 0.882
11 N -0.386 5.386
12 C 0.320 3.680
13 O -0.388 6.388
14 C -0.304 4.304
15 S 0.169 5.831
16 C -0.685 4.685
17 H 0.090 0.910
18 C -0.135 4.135
19 N -0.503 5.503
20 Si 0.744 3.256
21 H -0.199 1.199
22 H -0.208 1.208
23 H -0.199 1.199
24 C -0.064 4.064
25 H 0.090 0.910
26 C -0.190 4.190
27 N -0.058 5.058
28 O 0.033 5.967
29 H 0.107 0.893
30 H 0.105 0.895
31 H 0.112 0.888
32 H 0.188 0.812
33 H 0.111 0.889
34 H 0.118 0.882
35 H 0.075 0.925
36 H 0.103 0.897
37 H 0.098 0.902
38 H 0.101 0.899
39 H 0.225 0.775
40 H 0.106 0.894
41 H 0.106 0.894
42 H 0.079 0.921
43 H 0.075 0.925
44 H 0.080 0.920
45 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 5.970 8.802 -23.352 25.660
hybrid contribution -3.195 -1.193 -1.331 3.661
sum 2.775 7.609 -24.683 25.978
Atomic orbital electron populations
1.20397 0.83849 1.05181 1.04160 1.24589 0.96529 0.86069 1.01818
1.22462 0.91323 1.01038 1.10645 1.24458 0.98846 0.90569 1.03779
1.20912 0.88628 0.98891 0.92297 1.65108 1.31104 1.25072 1.00534
1.23403 1.01228 0.90471 0.94962 1.22916 0.98394 1.01029 0.94861
1.21740 0.85789 0.93097 0.95875 0.88179 1.46157 1.29519 1.54675
1.08251 1.20309 0.86116 0.80024 0.81601 1.90702 1.47456 1.51913
1.48689 1.23532 0.98003 1.01179 1.07663 1.85391 1.37060 1.67313
0.93329 1.22825 1.12785 1.37092 0.95794 0.91025 1.24980 0.97625
0.96128 0.94768 1.70005 1.38534 1.43282 0.98458 0.86234 0.81767
0.80212 0.77350 1.19923 1.20783 1.19937 1.22872 0.94540 0.96890
0.92058 0.91031 1.21703 1.02713 0.92852 1.01728 1.73920 0.97027
1.16206 1.18619 1.84860 1.11356 1.33272 1.67261 0.89341 0.89450
0.88791 0.81183 0.88903 0.88195 0.92461 0.89716 0.90245 0.89866
0.77487 0.89384 0.89399 0.92111 0.92474 0.92013 0.91480
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.37 10.45 36.00 0.38 0.01 16
2 C -0.03 -0.21 7.49 -35.31 -0.26 -0.48 16
3 C -0.23 -1.80 9.30 -39.38 -0.37 -2.17 16
4 C -0.02 -0.15 4.85 -82.10 -0.40 -0.55 16
5 C 0.12 1.00 6.14 -4.98 -0.03 0.97 16
6 N -0.49 -4.71 5.17 -224.00 -1.16 -5.87 16
7 C 0.03 0.29 6.39 -1.90 -0.01 0.28 16
8 C -0.13 -1.65 6.78 -24.87 -0.17 -1.82 16
9 C 0.14 1.80 2.93 -66.57 -0.20 1.61 16
10 H 0.10 1.44 7.19 -51.93 -0.37 1.07 16
11 N -0.73 -10.46 5.09 -52.49 -0.27 -10.73 16
12 C 0.53 10.14 7.84 -10.98 -0.09 10.05 16
13 O -0.51 -11.71 15.56 5.56 0.09 -11.63 16
14 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16
15 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16
16 C -0.54 -15.33 9.50 30.94 0.29 -15.03 16
17 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16
18 C 0.07 2.12 5.49 -17.44 -0.10 2.03 16
19 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16
20 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16
21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16
22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16
24 C 0.05 0.45 2.62 -66.64 -0.17 0.27 16
25 H 0.07 0.70 4.02 -51.93 -0.21 0.50 16
26 C -0.13 -1.14 9.32 37.16 0.35 -0.80 16
27 N -0.35 -4.01 10.84 33.42 0.36 -3.65 16
28 O 0.10 1.05 11.20 17.16 0.19 1.25 16
29 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16
30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16
31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16
32 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16
33 H 0.09 0.74 8.08 -51.93 -0.42 0.32 16
34 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16
35 H 0.06 0.69 6.25 -51.93 -0.32 0.37 16
36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16
37 H 0.08 1.14 8.05 -51.93 -0.42 0.72 16
38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16
39 H 0.39 4.93 8.29 -40.82 -0.34 4.59 16
40 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16
41 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16
42 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16
43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
LS Contribution 383.38 15.07 5.78 5.78
Total: -1.00 -34.63 383.38 -8.76 -43.39
By element:
Atomic # 1 Polarization: 9.61 SS G_CDS: -6.70 Total: 2.91 kcal
Atomic # 6 Polarization: -7.99 SS G_CDS: -0.55 Total: -8.55 kcal
Atomic # 7 Polarization: -45.39 SS G_CDS: -0.33 Total: -45.72 kcal
Atomic # 8 Polarization: -10.66 SS G_CDS: 0.28 Total: -10.38 kcal
Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal
Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal
Total LS contribution 5.78 Total: 5.78 kcal
Total: -34.63 -8.76 -43.39 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001479697931.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.537 kcal
(2) G-P(sol) polarization free energy of solvation -34.629 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.908 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.391 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.146 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds