Wall clock time and date at job start Tue Mar 31 2020 22:06:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.35447 * 126.77919 * 2 1
4 4 C 1.41385 * 103.98440 * 179.97438 * 3 2 1
5 5 C 1.50703 * 126.80021 * 180.02562 * 4 3 2
6 6 N 1.46894 * 109.47322 * 95.00172 * 5 4 3
7 7 C 1.48530 * 110.99942 * 69.87074 * 6 5 4
8 8 C 1.54945 * 103.22676 * 200.28016 * 7 6 5
9 9 C 1.54593 * 102.92000 * 37.41473 * 8 7 6
10 10 H 1.08997 * 110.30915 * 219.12431 * 9 8 7
11 11 N 1.46510 * 110.30804 * 97.05806 * 9 8 7
12 12 C 1.34776 * 119.99846 * 86.45175 * 11 9 8
13 13 O 1.21282 * 119.99820 * 0.02562 * 12 11 9
14 14 C 1.50702 * 119.99828 * 179.97438 * 12 11 9
15 15 S 1.80999 * 109.46968 * 179.97438 * 14 12 11
16 16 C 1.76205 * 99.99892 * 180.02562 * 15 14 12
17 17 H 1.08002 * 119.99787 * 0.02562 * 16 15 14
18 18 C 1.38789 * 119.99797 * 180.02562 * 16 15 14
19 19 N 1.31628 * 120.00541 * 0.02562 * 18 16 15
20 20 Si 1.86802 * 119.99955 * 180.02562 * 18 16 15
21 21 H 1.48504 * 109.47061 * 59.99916 * 20 18 16
22 22 H 1.48502 * 109.47310 * 180.02562 * 20 18 16
23 23 H 1.48498 * 109.47146 * 300.00318 * 20 18 16
24 24 C 1.47911 * 110.99819 * 312.47467 * 6 5 4
25 25 H 1.09003 * 109.91410 * 26.49659 * 24 6 5
26 26 C 1.52997 * 109.91678 * 265.19684 * 24 6 5
27 27 N 1.30172 * 106.39687 * 0.02562 * 4 3 2
28 28 O 1.20924 * 111.60656 * 359.97438 * 27 4 3
29 29 H 1.08998 * 109.47530 * 89.99264 * 1 2 3
30 30 H 1.08998 * 109.47545 * 209.99762 * 1 2 3
31 31 H 1.09001 * 109.47073 * 329.99851 * 1 2 3
32 32 H 1.08001 * 128.00625 * 0.23336 * 3 2 1
33 33 H 1.08997 * 109.46546 * 215.00302 * 5 4 3
34 34 H 1.09003 * 109.46847 * 334.99631 * 5 4 3
35 35 H 1.08997 * 110.66786 * 318.71606 * 7 6 5
36 36 H 1.09001 * 110.66477 * 81.68251 * 7 6 5
37 37 H 1.09000 * 110.72265 * 155.77214 * 8 7 6
38 38 H 1.08995 * 110.72097 * 278.87762 * 8 7 6
39 39 H 0.97000 * 119.99686 * 266.45659 * 11 9 8
40 40 H 1.08999 * 109.47177 * 300.00545 * 14 12 11
41 41 H 1.09002 * 109.46697 * 60.00462 * 14 12 11
42 42 H 0.97003 * 120.00255 * 180.02562 * 19 18 16
43 43 H 1.08997 * 109.47179 * 61.45485 * 26 24 6
44 44 H 1.09004 * 109.46814 * 181.45297 * 26 24 6
45 45 H 1.08999 * 109.46969 * 301.45566 * 26 24 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3180 1.0849 0.0000
4 6 3.6214 0.5371 0.0006
5 6 4.9211 1.2998 0.0014
6 7 5.4039 1.4433 1.3813
7 6 5.8542 0.1370 1.9263
8 6 5.8123 0.3589 3.4592
9 6 4.5549 1.2386 3.6468
10 1 4.7342 1.9972 4.4087
11 7 3.4050 0.4095 4.0167
12 6 3.1815 0.1059 5.3107
13 8 3.9321 0.5194 6.1689
14 6 1.9983 -0.7463 5.6912
15 16 1.9718 -0.9748 7.4865
16 6 0.5317 -1.9775 7.6461
17 1 -0.0302 -2.2591 6.7678
18 6 0.1197 -2.4055 8.9004
19 7 0.8043 -2.0619 9.9709
20 14 -1.4067 -3.4691 9.0696
21 1 -1.2200 -4.7280 8.3044
22 1 -1.6310 -3.7886 10.5023
23 1 -2.5827 -2.7356 8.5364
24 6 4.3198 1.9018 2.2771
25 1 3.3532 1.5954 1.8772
26 6 4.3704 3.4243 2.4196
27 7 3.4763 -0.7565 0.0003
28 8 2.3094 -1.0738 0.0002
29 1 -0.3634 0.0001 -1.0276
30 1 -0.3634 -0.8900 0.5138
31 1 -0.3633 0.8900 0.5139
32 1 2.0345 2.1270 0.0035
33 1 5.6608 0.7577 -0.5878
34 1 4.7633 2.2870 -0.4329
35 1 5.1689 -0.6586 1.6339
36 1 6.8678 -0.0890 1.5953
37 1 5.7008 -0.5902 3.9834
38 1 6.7065 0.8822 3.7976
39 1 2.8046 0.0791 3.3303
40 1 1.0790 -0.2544 5.3735
41 1 2.0782 -1.7176 5.2028
42 1 0.5164 -2.3613 10.8475
43 1 4.2201 3.8858 1.4436
44 1 3.5851 3.7517 3.1010
45 1 5.3418 3.7201 2.8157
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001479697931.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:06:23
Heat of formation + Delta-G solvation = 8.441705 kcal
Electronic energy + Delta-G solvation = -27707.604532 eV
Core-core repulsion = 23853.813677 eV
Total energy + Delta-G solvation = -3853.790855 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-45.95955 -41.38591 -39.83791 -36.20937 -34.85013 -34.59733 -34.15971 -32.40281
-32.21095 -30.43489 -28.65708 -27.71546 -26.94558 -26.09785 -24.11321 -22.85246
-22.20956 -21.38920 -20.28718 -19.71663 -18.79341 -18.13745 -17.89955 -17.84412
-16.89051 -16.81600 -16.42276 -16.17191 -15.75511 -15.51096 -15.42169 -14.76405
-14.69132 -14.51014 -14.20493 -13.97290 -13.96753 -13.85166 -13.56284 -13.24694
-13.18849 -13.11709 -12.88326 -12.79420 -12.67736 -12.52949 -12.37129 -12.33669
-11.88601 -11.83154 -11.74041 -11.14067 -11.10475 -10.99343 -10.31457 -10.25577
-10.19440 -9.70339 -8.69056 -8.35667 -6.14511 0.50050 1.19488 1.23722
1.43303 1.44647 1.52634 1.54739 2.15051 2.22876 2.26203 2.86278
2.98459 3.19431 3.28904 3.35355 3.50781 3.62550 3.87914 3.98787
4.09425 4.13223 4.20746 4.23829 4.28061 4.39876 4.41344 4.43319
4.51667 4.69277 4.71428 4.72286 4.78909 4.85158 4.89115 4.93735
5.00183 5.02712 5.03828 5.25309 5.32945 5.38025 5.39984 5.72218
5.86104 6.18165 6.33678 7.05310 7.13160 7.29013 8.73344
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.012863 B = 0.003062 C = 0.002647
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2176.225872 B = 9141.522626 C =10575.883554
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 C -0.028 4.028
3 C -0.235 4.235
4 C -0.019 4.019
5 C 0.121 3.879
6 N -0.490 5.490
7 C 0.035 3.965
8 C -0.133 4.133
9 C 0.135 3.865
10 H 0.083 0.917
11 N -0.708 5.708
12 C 0.537 3.463
13 O -0.557 6.557
14 C -0.129 4.129
15 S -0.144 6.144
16 C -0.549 4.549
17 H 0.082 0.918
18 C 0.015 3.985
19 N -0.911 5.911
20 Si 0.998 3.002
21 H -0.263 1.263
22 H -0.278 1.278
23 H -0.260 1.260
24 C 0.055 3.945
25 H 0.078 0.922
26 C -0.129 4.129
27 N -0.386 5.386
28 O 0.076 5.924
29 H 0.105 0.895
30 H 0.085 0.915
31 H 0.109 0.891
32 H 0.195 0.805
33 H 0.095 0.905
34 H 0.125 0.875
35 H 0.045 0.955
36 H 0.096 0.904
37 H 0.055 0.945
38 H 0.087 0.913
39 H 0.404 0.596
40 H 0.110 0.890
41 H 0.102 0.898
42 H 0.272 0.728
43 H 0.080 0.920
44 H 0.059 0.941
45 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.767 9.418 -27.548 29.167
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.091 4.091
3 C -0.256 4.256
4 C -0.180 4.180
5 C -0.008 4.008
6 N -0.213 5.213
7 C -0.093 4.093
8 C -0.172 4.172
9 C 0.030 3.970
10 H 0.102 0.898
11 N -0.361 5.361
12 C 0.323 3.677
13 O -0.435 6.435
14 C -0.280 4.280
15 S 0.083 5.917
16 C -0.697 4.697
17 H 0.100 0.900
18 C -0.190 4.190
19 N -0.547 5.547
20 Si 0.819 3.181
21 H -0.188 1.188
22 H -0.203 1.203
23 H -0.184 1.184
24 C -0.054 4.054
25 H 0.096 0.904
26 C -0.187 4.187
27 N -0.094 5.094
28 O 0.012 5.988
29 H 0.123 0.877
30 H 0.104 0.896
31 H 0.128 0.872
32 H 0.212 0.788
33 H 0.113 0.887
34 H 0.143 0.857
35 H 0.063 0.937
36 H 0.114 0.886
37 H 0.074 0.926
38 H 0.106 0.894
39 H 0.239 0.761
40 H 0.128 0.872
41 H 0.120 0.880
42 H 0.081 0.919
43 H 0.098 0.902
44 H 0.078 0.922
45 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 4.328 9.460 -25.977 27.983
hybrid contribution -2.634 -1.348 -0.653 3.030
sum 1.694 8.112 -26.630 27.890
Atomic orbital electron populations
1.20576 0.81710 1.05848 1.05438 1.25219 0.97726 0.85533 1.00657
1.22779 0.90414 1.02119 1.10335 1.24738 0.99888 0.90265 1.03070
1.21075 0.88283 1.00162 0.91255 1.65156 1.30972 1.24009 1.01178
1.23302 1.01680 0.90837 0.93466 1.22867 0.98423 0.99758 0.96167
1.21928 0.85199 0.92630 0.97267 0.89845 1.45915 1.29813 1.53623
1.06734 1.20054 0.85295 0.79667 0.82679 1.90692 1.48770 1.53769
1.50249 1.23357 0.99847 1.02613 1.02211 1.85561 1.37971 1.67885
1.00321 1.23170 1.12780 1.37165 0.96575 0.89965 1.26121 1.01255
0.97429 0.94186 1.70172 1.40676 1.44756 0.99129 0.85014 0.77212
0.78267 0.77575 1.18765 1.20344 1.18421 1.22817 0.94951 0.97569
0.90062 0.90427 1.21692 1.02420 0.91575 1.02990 1.73928 0.97638
1.17468 1.20375 1.84820 1.11534 1.34492 1.67923 0.87686 0.89592
0.87235 0.78770 0.88694 0.85673 0.93704 0.88617 0.92625 0.89408
0.76076 0.87179 0.87978 0.91936 0.90158 0.92233 0.91984
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.54 10.45 71.24 0.74 0.21 16
2 C -0.03 -0.39 7.49 25.04 0.19 -0.20 16
3 C -0.23 -2.97 9.30 22.40 0.21 -2.76 16
4 C -0.02 -0.32 4.85 43.58 0.21 -0.11 16
5 C 0.12 1.66 6.14 85.56 0.53 2.18 16
6 N -0.49 -8.28 5.17 -862.59 -4.46 -12.74 16
7 C 0.03 0.71 6.39 86.65 0.55 1.27 16
8 C -0.13 -3.30 6.78 31.80 0.22 -3.08 16
9 C 0.14 3.37 2.93 45.87 0.13 3.51 16
10 H 0.08 2.42 7.19 -2.39 -0.02 2.40 16
11 N -0.71 -19.73 5.09 -438.36 -2.23 -21.96 16
12 C 0.54 20.52 7.84 87.66 0.69 21.21 16
13 O -0.56 -26.21 15.56 -3.04 -0.05 -26.26 16
14 C -0.13 -5.26 6.16 71.24 0.44 -4.82 16
15 S -0.14 -8.09 20.57 -56.49 -1.16 -9.26 16
16 C -0.55 -31.48 9.50 67.95 0.65 -30.84 16
17 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16
18 C 0.01 0.85 5.49 84.86 0.47 1.32 16
19 N -0.91 -56.10 13.22 21.65 0.29 -55.81 16
20 Si 1.00 43.44 29.55 68.60 2.03 45.47 16
21 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16
22 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16
23 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16
24 C 0.05 0.97 2.62 45.06 0.12 1.09 16
25 H 0.08 1.32 4.02 -2.39 -0.01 1.31 16
26 C -0.13 -1.90 9.32 71.98 0.67 -1.23 16
27 N -0.39 -8.41 10.84 -49.55 -0.54 -8.95 16
28 O 0.08 1.54 11.20 71.56 0.80 2.35 16
29 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16
30 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16
31 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16
32 H 0.20 1.37 8.06 -2.91 -0.02 1.35 16
33 H 0.09 1.29 8.08 -2.39 -0.02 1.28 16
34 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16
35 H 0.04 1.06 6.25 -2.39 -0.01 1.04 16
36 H 0.10 1.75 8.14 -2.39 -0.02 1.74 16
37 H 0.05 1.64 8.05 -2.39 -0.02 1.62 16
38 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16
39 H 0.40 9.53 8.29 -92.71 -0.77 8.76 16
40 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16
41 H 0.10 3.87 8.14 -2.39 -0.02 3.85 16
42 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16
43 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16
44 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16
45 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
Total: -1.00 -77.69 383.38 0.73 -76.96
By element:
Atomic # 1 Polarization: 22.20 SS G_CDS: 0.24 Total: 22.44 kcal
Atomic # 6 Polarization: -18.06 SS G_CDS: 5.81 Total: -12.25 kcal
Atomic # 7 Polarization: -92.52 SS G_CDS: -6.94 Total: -99.45 kcal
Atomic # 8 Polarization: -24.67 SS G_CDS: 0.75 Total: -23.91 kcal
Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal
Atomic # 16 Polarization: -8.09 SS G_CDS: -1.16 Total: -9.26 kcal
Total: -77.69 0.73 -76.96 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001479697931.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.405 kcal
(2) G-P(sol) polarization free energy of solvation -77.692 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.712 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.729 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.963 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.442 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds