Wall clock time and date at job start Tue Mar 31 2020 22:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37477 * 122.44622 * 2 1 4 4 C 1.36650 * 113.29566 * 180.20575 * 3 2 1 5 5 C 1.46576 * 125.45978 * 179.76256 * 4 3 2 6 6 O 1.21708 * 119.99965 * 351.39654 * 5 4 3 7 7 N 1.34773 * 120.00265 * 171.39452 * 5 4 3 8 8 C 1.46502 * 120.00011 * 0.09373 * 7 5 4 9 9 C 1.46500 * 120.00285 * 180.09850 * 7 5 4 10 10 C 1.53003 * 109.47074 * 89.99920 * 9 7 5 11 11 N 1.46906 * 109.47056 * 180.02562 * 10 9 7 12 12 C 1.46896 * 111.00004 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47023 * 180.02562 * 12 11 10 14 14 O 1.21290 * 119.99930 * 359.97438 * 13 12 11 15 15 N 1.34781 * 119.99695 * 180.02562 * 13 12 11 16 16 C 1.37095 * 119.99518 * 179.97438 * 15 13 12 17 17 H 1.07999 * 120.00519 * 359.97438 * 16 15 13 18 18 C 1.38958 * 119.99526 * 179.97438 * 16 15 13 19 19 N 1.31409 * 119.99484 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00118 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47159 * 89.99749 * 20 18 16 22 22 H 1.48497 * 109.46861 * 209.99761 * 20 18 16 23 23 H 1.48503 * 109.46874 * 329.99463 * 20 18 16 24 24 S 1.75838 * 109.08162 * 359.66310 * 4 3 2 25 25 C 1.33814 * 122.45205 * 179.97438 * 2 1 3 26 26 C 1.50705 * 124.52036 * 0.02562 * 25 2 1 27 27 H 1.08996 * 109.46941 * 90.02927 * 1 2 3 28 28 H 1.09003 * 109.47158 * 210.02525 * 1 2 3 29 29 H 1.09000 * 109.47338 * 330.02589 * 1 2 3 30 30 H 1.08003 * 123.35198 * 359.93792 * 3 2 1 31 31 H 1.09000 * 109.46892 * 83.45286 * 8 7 5 32 32 H 1.08999 * 109.47441 * 203.45816 * 8 7 5 33 33 H 1.09003 * 109.47173 * 323.46368 * 8 7 5 34 34 H 1.08999 * 109.47150 * 209.99670 * 9 7 5 35 35 H 1.08999 * 109.47027 * 329.99977 * 9 7 5 36 36 H 1.08999 * 109.46927 * 299.99886 * 10 9 7 37 37 H 1.08999 * 109.47147 * 60.00131 * 10 9 7 38 38 H 1.00903 * 110.99737 * 56.04491 * 11 10 9 39 39 H 1.09005 * 109.47072 * 300.00158 * 12 11 10 40 40 H 1.09005 * 109.47236 * 59.99491 * 12 11 10 41 41 H 0.97002 * 119.99792 * 359.97438 * 15 13 12 42 42 H 0.96998 * 119.99762 * 180.02562 * 19 18 16 43 43 H 1.08994 * 109.47128 * 89.99542 * 26 25 2 44 44 H 1.08998 * 109.46616 * 209.99792 * 26 25 2 45 45 H 1.08999 * 109.46759 * 329.99641 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2446 1.1602 0.0000 4 6 3.5937 0.9429 -0.0045 5 6 4.6230 1.9863 -0.0106 6 8 4.3079 3.1511 -0.1696 7 7 5.9185 1.6560 0.1600 8 6 6.2981 0.2538 0.3494 9 6 6.9471 2.6992 0.1561 10 6 7.1561 3.2146 1.5815 11 7 8.1871 4.2611 1.5775 12 6 8.4146 4.7812 2.9323 13 6 9.4756 5.8505 2.8883 14 8 9.9918 6.1495 1.8323 15 7 9.8516 6.4738 4.0227 16 6 10.8172 7.4462 3.9827 17 1 11.2768 7.7125 3.0424 18 6 11.2044 8.0892 5.1521 19 7 12.1296 9.0216 5.1137 20 14 10.4098 7.6281 6.7786 21 1 11.1864 6.5349 7.4166 22 1 10.3937 8.8120 7.6748 23 1 9.0177 7.1709 6.5374 24 16 3.8970 -0.7892 0.0010 25 6 2.2250 -1.1292 0.0005 26 6 1.6355 -2.5161 0.0006 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 1.8018 2.1453 -0.0010 31 1 6.3852 -0.2334 -0.6217 32 1 7.2553 0.2034 0.8684 33 1 5.5361 -0.2520 0.9425 34 1 7.8823 2.2859 -0.2215 35 1 6.6282 3.5214 -0.4845 36 1 6.2209 3.6280 1.9591 37 1 7.4750 2.3924 2.2221 38 1 7.9444 5.0054 0.9408 39 1 7.4878 5.2051 3.3192 40 1 8.7423 3.9701 3.5826 41 1 9.4389 6.2343 4.8673 42 1 12.4002 9.4702 5.9301 43 1 1.4937 -2.8507 -1.0270 44 1 2.3123 -3.1985 0.5148 45 1 0.6742 -2.5022 0.5141 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481312270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:42 Heat of formation + Delta-G solvation = -29.125423 kcal Electronic energy + Delta-G solvation = -25795.175011 eV Core-core repulsion = 21939.755123 eV Total energy + Delta-G solvation = -3855.419888 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.28306 -38.79235 -38.43247 -36.44876 -35.13141 -33.87063 -32.73911 -31.65176 -30.34814 -29.86923 -27.37382 -26.92076 -25.64318 -24.16236 -23.23521 -22.06960 -20.22060 -19.35037 -18.71095 -18.44356 -18.23571 -16.69360 -16.38748 -16.23923 -15.70280 -15.57175 -15.15096 -14.85481 -14.78039 -14.23461 -13.94707 -13.78997 -13.61751 -13.54686 -13.39646 -13.32802 -13.12895 -12.95982 -12.88127 -12.46119 -12.42091 -12.24937 -12.11238 -12.02353 -11.87310 -11.64398 -11.22731 -11.07627 -10.84621 -10.58011 -10.29592 -9.95942 -9.55497 -9.25372 -8.87954 -8.69843 -8.56577 -8.19071 -8.14216 -6.29337 -3.80604 0.14895 1.09586 1.53274 1.97079 2.54328 2.89666 3.04350 3.08308 3.16354 3.76068 4.09487 4.12033 4.23766 4.35490 4.55030 4.67013 4.74947 4.82504 4.86250 4.94099 4.99164 5.02196 5.11703 5.17118 5.19455 5.24056 5.24683 5.37895 5.43005 5.48482 5.55169 5.63390 5.74724 5.80355 5.85355 5.93527 5.94900 6.08263 6.14631 6.95604 7.05571 7.55266 7.60139 7.80628 8.16366 8.61693 8.96778 9.44305 9.84609 10.83816 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024051 B = 0.001766 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.895445 B =15852.926862 C =16147.658287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.126 4.126 3 C -0.044 4.044 4 C -0.271 4.271 5 C 0.588 3.412 6 O -0.525 6.525 7 N -0.610 5.610 8 C 0.062 3.938 9 C 0.119 3.881 10 C 0.045 3.955 11 N -0.666 5.666 12 C 0.050 3.950 13 C 0.451 3.549 14 O -0.564 6.564 15 N -0.591 5.591 16 C -0.305 4.305 17 H 0.120 0.880 18 C 0.041 3.959 19 N -0.881 5.881 20 Si 0.880 3.120 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.270 1.270 24 S 0.221 5.779 25 C -0.226 4.226 26 C -0.085 4.085 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.151 0.849 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.032 0.968 37 H 0.071 0.929 38 H 0.353 0.647 39 H 0.045 0.955 40 H 0.087 0.913 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.083 -27.415 -8.056 36.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.138 4.138 3 C -0.077 4.077 4 C -0.391 4.391 5 C 0.376 3.624 6 O -0.402 6.402 7 N -0.343 5.343 8 C -0.084 4.084 9 C -0.003 4.003 10 C -0.086 4.086 11 N -0.299 5.299 12 C -0.083 4.083 13 C 0.236 3.764 14 O -0.446 6.446 15 N -0.230 5.230 16 C -0.434 4.434 17 H 0.137 0.863 18 C -0.162 4.162 19 N -0.521 5.521 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.195 1.195 24 S 0.491 5.509 25 C -0.344 4.344 26 C -0.143 4.143 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.169 0.831 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.173 0.827 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.925 -27.788 -8.724 35.863 hybrid contribution -2.650 1.061 1.691 3.318 sum -23.574 -26.727 -7.033 36.325 Atomic orbital electron populations 1.20526 0.89736 1.02780 1.02308 1.18647 0.97760 0.91260 1.06127 1.20614 0.91032 0.99873 0.96198 1.24438 0.97934 0.96854 1.19883 1.17036 0.81392 0.87316 0.76649 1.90859 1.80983 1.18815 1.49575 1.47625 1.06386 1.08083 1.72240 1.22077 1.02378 0.81373 1.02534 1.21478 0.90372 0.91017 0.97481 1.22275 0.93554 0.95813 0.96948 1.60020 1.45295 1.16174 1.08424 1.21693 0.97717 0.97716 0.91205 1.19689 0.86600 0.85290 0.84805 1.90564 1.57578 1.66713 1.29702 1.42202 1.37262 1.35983 1.07581 1.19442 1.13771 1.12193 0.97954 0.86252 1.25039 0.96760 0.96343 0.98033 1.69622 1.29476 1.24218 1.28825 0.86667 0.79484 0.79074 0.84142 1.19600 1.20187 1.19537 1.83481 1.00861 0.98073 1.68509 1.24685 1.01717 1.00098 1.07910 1.20382 1.01077 0.89973 1.02870 0.91240 0.91477 0.91412 0.83123 0.91273 0.88528 0.90692 0.88846 0.89311 0.94971 0.91013 0.82735 0.93678 0.89473 0.79690 0.91631 0.90505 0.91243 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.53 9.84 36.01 0.35 -0.18 16 2 C -0.13 -1.00 5.78 -106.45 -0.62 -1.61 16 3 C -0.04 -0.43 9.81 -40.43 -0.40 -0.82 16 4 C -0.27 -2.77 6.23 -36.80 -0.23 -3.00 16 5 C 0.59 7.33 7.64 -12.90 -0.10 7.23 16 6 O -0.52 -8.46 16.43 5.18 0.09 -8.38 16 7 N -0.61 -6.22 2.87 -183.16 -0.53 -6.75 16 8 C 0.06 0.40 8.92 59.85 0.53 0.93 16 9 C 0.12 1.33 5.64 -4.04 -0.02 1.31 16 10 C 0.04 0.57 6.01 -3.82 -0.02 0.54 16 11 N -0.67 -10.64 6.13 -115.05 -0.70 -11.35 16 12 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 13 C 0.45 10.46 7.82 -10.98 -0.09 10.38 16 14 O -0.56 -15.40 15.78 5.55 0.09 -15.31 16 15 N -0.59 -14.35 5.09 -10.96 -0.06 -14.41 16 16 C -0.30 -8.76 10.16 -14.93 -0.15 -8.91 16 17 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 18 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 19 N -0.88 -26.01 13.96 55.50 0.77 -25.23 16 20 Si 0.88 19.62 27.74 -169.99 -4.71 14.91 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.27 -5.52 6.52 56.52 0.37 -5.15 16 24 S 0.22 1.50 17.84 -107.50 -1.92 -0.42 16 25 C -0.23 -1.57 6.28 -35.86 -0.23 -1.79 16 26 C -0.08 -0.36 9.98 36.01 0.36 0.00 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.29 6.54 -51.93 -0.34 -0.05 16 29 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 30 H 0.15 1.47 8.06 -52.48 -0.42 1.05 16 31 H 0.07 0.35 7.77 -51.93 -0.40 -0.05 16 32 H 0.10 0.49 8.02 -51.93 -0.42 0.07 16 33 H 0.08 0.44 4.61 -23.20 -0.11 0.34 16 34 H 0.09 0.92 8.07 -51.93 -0.42 0.51 16 35 H 0.09 1.14 7.42 -51.93 -0.39 0.75 16 36 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.35 5.96 8.43 -39.29 -0.33 5.63 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.37 7.91 5.76 -40.82 -0.24 7.67 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.08 0.27 6.57 -51.93 -0.34 -0.07 16 LS Contribution 384.41 15.07 5.79 5.79 Total: -1.00 -35.80 384.41 -8.25 -44.04 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -6.34 Total: 11.17 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -0.73 Total: 5.94 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.51 Total: -57.74 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: 0.17 Total: -23.69 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.71 Total: 14.91 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -1.92 Total: -0.42 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.80 -8.25 -44.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481312270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.915 kcal (2) G-P(sol) polarization free energy of solvation -35.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds