Wall clock time and date at job start Tue Mar 31 2020 22:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37477 * 122.44622 * 2 1 4 4 C 1.36650 * 113.29566 * 180.20575 * 3 2 1 5 5 C 1.46576 * 125.45978 * 179.76256 * 4 3 2 6 6 O 1.21708 * 119.99965 * 351.39654 * 5 4 3 7 7 N 1.34773 * 120.00265 * 171.39452 * 5 4 3 8 8 C 1.46502 * 120.00011 * 0.09373 * 7 5 4 9 9 C 1.46500 * 120.00285 * 180.09850 * 7 5 4 10 10 C 1.53003 * 109.47074 * 89.99920 * 9 7 5 11 11 N 1.46906 * 109.47056 * 180.02562 * 10 9 7 12 12 C 1.46896 * 111.00004 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47023 * 180.02562 * 12 11 10 14 14 O 1.21290 * 119.99930 * 359.97438 * 13 12 11 15 15 N 1.34781 * 119.99695 * 180.02562 * 13 12 11 16 16 C 1.37095 * 119.99518 * 179.97438 * 15 13 12 17 17 H 1.07999 * 120.00519 * 359.97438 * 16 15 13 18 18 C 1.38958 * 119.99526 * 179.97438 * 16 15 13 19 19 N 1.31409 * 119.99484 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00118 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47159 * 89.99749 * 20 18 16 22 22 H 1.48497 * 109.46861 * 209.99761 * 20 18 16 23 23 H 1.48503 * 109.46874 * 329.99463 * 20 18 16 24 24 S 1.75838 * 109.08162 * 359.66310 * 4 3 2 25 25 C 1.33814 * 122.45205 * 179.97438 * 2 1 3 26 26 C 1.50705 * 124.52036 * 0.02562 * 25 2 1 27 27 H 1.08996 * 109.46941 * 90.02927 * 1 2 3 28 28 H 1.09003 * 109.47158 * 210.02525 * 1 2 3 29 29 H 1.09000 * 109.47338 * 330.02589 * 1 2 3 30 30 H 1.08003 * 123.35198 * 359.93792 * 3 2 1 31 31 H 1.09000 * 109.46892 * 83.45286 * 8 7 5 32 32 H 1.08999 * 109.47441 * 203.45816 * 8 7 5 33 33 H 1.09003 * 109.47173 * 323.46368 * 8 7 5 34 34 H 1.08999 * 109.47150 * 209.99670 * 9 7 5 35 35 H 1.08999 * 109.47027 * 329.99977 * 9 7 5 36 36 H 1.08999 * 109.46927 * 299.99886 * 10 9 7 37 37 H 1.08999 * 109.47147 * 60.00131 * 10 9 7 38 38 H 1.00903 * 110.99737 * 56.04491 * 11 10 9 39 39 H 1.09005 * 109.47072 * 300.00158 * 12 11 10 40 40 H 1.09005 * 109.47236 * 59.99491 * 12 11 10 41 41 H 0.97002 * 119.99792 * 359.97438 * 15 13 12 42 42 H 0.96998 * 119.99762 * 180.02562 * 19 18 16 43 43 H 1.08994 * 109.47128 * 89.99542 * 26 25 2 44 44 H 1.08998 * 109.46616 * 209.99792 * 26 25 2 45 45 H 1.08999 * 109.46759 * 329.99641 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2446 1.1602 0.0000 4 6 3.5937 0.9429 -0.0045 5 6 4.6230 1.9863 -0.0106 6 8 4.3079 3.1511 -0.1696 7 7 5.9185 1.6560 0.1600 8 6 6.2981 0.2538 0.3494 9 6 6.9471 2.6992 0.1561 10 6 7.1561 3.2146 1.5815 11 7 8.1871 4.2611 1.5775 12 6 8.4146 4.7812 2.9323 13 6 9.4756 5.8505 2.8883 14 8 9.9918 6.1495 1.8323 15 7 9.8516 6.4738 4.0227 16 6 10.8172 7.4462 3.9827 17 1 11.2768 7.7125 3.0424 18 6 11.2044 8.0892 5.1521 19 7 12.1296 9.0216 5.1137 20 14 10.4098 7.6281 6.7786 21 1 11.1864 6.5349 7.4166 22 1 10.3937 8.8120 7.6748 23 1 9.0177 7.1709 6.5374 24 16 3.8970 -0.7892 0.0010 25 6 2.2250 -1.1292 0.0005 26 6 1.6355 -2.5161 0.0006 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 1.8018 2.1453 -0.0010 31 1 6.3852 -0.2334 -0.6217 32 1 7.2553 0.2034 0.8684 33 1 5.5361 -0.2520 0.9425 34 1 7.8823 2.2859 -0.2215 35 1 6.6282 3.5214 -0.4845 36 1 6.2209 3.6280 1.9591 37 1 7.4750 2.3924 2.2221 38 1 7.9444 5.0054 0.9408 39 1 7.4878 5.2051 3.3192 40 1 8.7423 3.9701 3.5826 41 1 9.4389 6.2343 4.8673 42 1 12.4002 9.4702 5.9301 43 1 1.4937 -2.8507 -1.0270 44 1 2.3123 -3.1985 0.5148 45 1 0.6742 -2.5022 0.5141 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481312270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:41 Heat of formation + Delta-G solvation = -56.464510 kcal Electronic energy + Delta-G solvation = -25796.360522 eV Core-core repulsion = 21939.755123 eV Total energy + Delta-G solvation = -3856.605399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.14771 -40.31933 -39.36321 -37.53725 -36.35297 -35.80319 -33.77207 -33.33839 -31.27568 -30.43789 -28.43565 -27.80768 -26.70612 -25.45778 -24.25127 -23.01205 -21.36115 -20.92413 -20.26018 -19.35656 -19.06426 -17.91423 -17.44691 -17.26916 -16.86554 -16.66729 -16.63823 -15.95447 -15.60865 -15.29876 -15.23998 -14.89645 -14.81804 -14.55300 -14.27224 -14.15257 -14.07727 -13.87529 -13.68813 -13.66164 -13.46896 -13.30590 -13.03889 -12.85288 -12.77291 -12.56209 -12.51621 -12.42679 -12.13470 -11.99112 -11.52808 -11.40138 -11.21180 -10.50603 -10.26448 -10.03775 -9.49718 -9.45970 -9.24383 -8.42440 -6.03569 -0.51787 0.48999 0.96008 1.29680 1.30100 1.34754 1.43775 1.73873 1.92611 2.07650 2.22100 2.73535 3.13314 3.36195 3.50232 3.88414 3.95393 4.03620 4.06986 4.13006 4.18336 4.27938 4.39178 4.44815 4.47171 4.53676 4.58137 4.65631 4.69580 4.74211 4.75246 4.85592 4.89542 4.94217 5.06599 5.10712 5.29754 5.42904 5.51009 5.54642 5.83934 5.97031 6.15213 6.23620 6.57721 6.86000 6.93259 7.37336 7.93447 8.75144 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024051 B = 0.001766 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.895445 B =15852.926862 C =16147.658287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.144 4.144 3 C -0.055 4.055 4 C -0.309 4.309 5 C 0.581 3.419 6 O -0.578 6.578 7 N -0.605 5.605 8 C 0.053 3.947 9 C 0.123 3.877 10 C 0.055 3.945 11 N -0.678 5.678 12 C 0.063 3.937 13 C 0.448 3.552 14 O -0.613 6.613 15 N -0.590 5.590 16 C -0.331 4.331 17 H 0.056 0.944 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.966 3.034 21 H -0.254 1.254 22 H -0.275 1.275 23 H -0.234 1.234 24 S 0.281 5.719 25 C -0.224 4.224 26 C -0.088 4.088 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.136 0.864 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.064 0.936 36 H 0.020 0.980 37 H 0.095 0.905 38 H 0.343 0.657 39 H 0.069 0.931 40 H 0.121 0.879 41 H 0.390 0.610 42 H 0.280 0.720 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.985 -31.660 -5.979 40.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.155 4.155 3 C -0.090 4.090 4 C -0.429 4.429 5 C 0.371 3.629 6 O -0.460 6.460 7 N -0.337 5.337 8 C -0.090 4.090 9 C 0.000 4.000 10 C -0.075 4.075 11 N -0.310 5.310 12 C -0.070 4.070 13 C 0.236 3.764 14 O -0.497 6.497 15 N -0.231 5.231 16 C -0.460 4.460 17 H 0.074 0.926 18 C -0.213 4.213 19 N -0.573 5.573 20 Si 0.785 3.215 21 H -0.178 1.178 22 H -0.200 1.200 23 H -0.157 1.157 24 S 0.552 5.448 25 C -0.343 4.343 26 C -0.146 4.146 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.154 0.846 31 H 0.105 0.895 32 H 0.136 0.864 33 H 0.100 0.900 34 H 0.129 0.871 35 H 0.083 0.917 36 H 0.038 0.962 37 H 0.113 0.887 38 H 0.162 0.838 39 H 0.087 0.913 40 H 0.139 0.861 41 H 0.225 0.775 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -22.827 -32.101 -6.647 39.947 hybrid contribution -2.010 2.318 0.902 3.198 sum -24.836 -29.783 -5.745 39.203 Atomic orbital electron populations 1.20563 0.88359 1.03456 1.02845 1.18804 0.98916 0.90842 1.06979 1.20716 0.91471 1.00187 0.96576 1.24385 0.97498 0.98872 1.22103 1.17449 0.82390 0.87176 0.75932 1.90815 1.81936 1.21037 1.52231 1.47684 1.05425 1.09425 1.71166 1.22386 1.03557 0.79104 1.04002 1.21364 0.91210 0.91024 0.96424 1.22270 0.92000 0.95201 0.98060 1.60053 1.46844 1.16426 1.07667 1.21630 0.96182 0.96550 0.92598 1.20906 0.86586 0.85315 0.83578 1.90544 1.59391 1.68212 1.31575 1.42017 1.36750 1.35385 1.08978 1.19024 1.15914 1.14768 0.96302 0.92621 1.26125 0.96911 0.95421 1.02865 1.69803 1.31225 1.25596 1.30703 0.85357 0.80086 0.79203 0.76823 1.17844 1.19973 1.15746 1.83089 1.00348 0.94353 1.67008 1.25181 1.02137 1.01184 1.05788 1.20536 1.01775 0.88300 1.03958 0.90755 0.89875 0.91688 0.84636 0.89550 0.86420 0.90004 0.87077 0.91708 0.96190 0.88678 0.83842 0.91283 0.86131 0.77453 0.91093 0.89338 0.89842 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 9.84 71.24 0.70 -0.23 16 2 C -0.14 -2.13 5.78 -21.05 -0.12 -2.25 16 3 C -0.05 -1.10 9.81 21.72 0.21 -0.89 16 4 C -0.31 -6.23 6.23 24.07 0.15 -6.08 16 5 C 0.58 14.73 7.64 86.42 0.66 15.39 16 6 O -0.58 -19.85 16.43 -4.37 -0.07 -19.93 16 7 N -0.61 -11.70 2.87 -851.61 -2.45 -14.14 16 8 C 0.05 0.53 8.92 127.77 1.14 1.67 16 9 C 0.12 2.67 5.64 86.38 0.49 3.15 16 10 C 0.05 1.28 6.01 86.30 0.52 1.80 16 11 N -0.68 -20.90 6.13 -517.91 -3.17 -24.08 16 12 C 0.06 2.01 6.17 85.56 0.53 2.54 16 13 C 0.45 20.82 7.82 87.66 0.69 21.50 16 14 O -0.61 -34.77 15.78 -3.06 -0.05 -34.82 16 15 N -0.59 -28.43 5.09 -306.98 -1.56 -30.00 16 16 C -0.33 -19.73 10.16 84.04 0.85 -18.88 16 17 H 0.06 3.94 7.39 -2.91 -0.02 3.92 16 18 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 19 N -0.93 -56.79 13.96 21.67 0.30 -56.49 16 20 Si 0.97 39.27 27.74 68.60 1.90 41.17 16 21 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 23 H -0.23 -8.11 6.52 99.48 0.65 -7.46 16 24 S 0.28 3.11 17.84 -56.49 -1.01 2.11 16 25 C -0.22 -2.56 6.28 24.68 0.15 -2.41 16 26 C -0.09 -0.44 9.98 71.24 0.71 0.27 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.08 0.53 6.54 -2.39 -0.02 0.52 16 29 H 0.06 0.66 8.13 -2.39 -0.02 0.65 16 30 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 31 H 0.09 0.60 7.77 -2.39 -0.02 0.58 16 32 H 0.12 0.73 8.02 -2.39 -0.02 0.71 16 33 H 0.08 0.71 4.61 -20.65 -0.10 0.62 16 34 H 0.11 2.01 8.07 -2.39 -0.02 1.99 16 35 H 0.06 1.73 7.42 -2.39 -0.02 1.72 16 36 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.34 11.76 8.43 -89.69 -0.76 11.01 16 39 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.12 3.13 8.14 -2.38 -0.02 3.11 16 41 H 0.39 15.56 5.76 -92.71 -0.53 15.02 16 42 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 43 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 45 H 0.09 0.31 6.57 -2.39 -0.02 0.29 16 Total: -1.00 -85.24 384.41 0.64 -84.60 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: -0.40 Total: 36.33 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 7.15 Total: 15.25 kcal Atomic # 7 Polarization: -117.82 SS G_CDS: -6.88 Total: -124.70 kcal Atomic # 8 Polarization: -54.63 SS G_CDS: -0.12 Total: -54.75 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 1.90 Total: 41.17 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -1.01 Total: 2.11 kcal Total: -85.24 0.64 -84.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481312270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.132 kcal (2) G-P(sol) polarization free energy of solvation -85.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds