Wall clock time and date at job start Tue Mar 31 2020 22:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30174 * 126.80506 * 2 1 4 4 O 1.20922 * 111.61025 * 179.97438 * 3 2 1 5 5 C 1.34041 * 111.56172 * 359.76917 * 4 3 2 6 6 C 1.35449 * 106.44857 * 0.37100 * 5 4 3 7 7 C 1.50700 * 128.00890 * 179.91223 * 6 5 4 8 8 N 1.46899 * 109.46991 * 259.68365 * 7 6 5 9 9 C 1.46901 * 110.99727 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47113 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47002 * 294.99693 * 10 9 8 12 12 N 1.46492 * 109.47363 * 54.99819 * 10 9 8 13 13 C 1.34772 * 120.00385 * 205.00351 * 12 10 9 14 14 O 1.21278 * 119.99770 * 359.97438 * 13 12 10 15 15 C 1.50705 * 120.00486 * 180.02562 * 13 12 10 16 16 S 1.80999 * 109.47084 * 179.97438 * 15 13 12 17 17 C 1.76205 * 99.99558 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00158 * 0.02562 * 17 16 15 19 19 C 1.38801 * 119.99627 * 179.97438 * 17 16 15 20 20 N 1.31627 * 119.99964 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00154 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46964 * 89.99915 * 21 19 17 23 23 H 1.48499 * 109.46853 * 209.99997 * 21 19 17 24 24 H 1.48494 * 109.47003 * 329.99933 * 21 19 17 25 25 C 1.52997 * 109.47127 * 175.00119 * 10 9 8 26 26 C 1.52998 * 117.49757 * 248.74651 * 25 10 9 27 27 C 1.53003 * 117.49978 * 180.08465 * 25 10 9 28 28 H 1.09001 * 109.47601 * 270.02863 * 1 2 3 29 29 H 1.09008 * 109.47130 * 30.02549 * 1 2 3 30 30 H 1.09000 * 109.47331 * 150.02068 * 1 2 3 31 31 H 1.07997 * 126.77725 * 180.29061 * 5 4 3 32 32 H 1.08997 * 109.47222 * 139.68651 * 7 6 5 33 33 H 1.08995 * 109.46960 * 19.68599 * 7 6 5 34 34 H 1.00898 * 111.00143 * 303.95282 * 8 7 6 35 35 H 1.09000 * 109.47283 * 59.99928 * 9 8 7 36 36 H 1.09007 * 109.47373 * 299.99941 * 9 8 7 37 37 H 0.97012 * 120.00025 * 25.00061 * 12 10 9 38 38 H 1.08998 * 109.46823 * 299.99865 * 15 13 12 39 39 H 1.08996 * 109.47135 * 59.99371 * 15 13 12 40 40 H 0.96996 * 120.00809 * 180.02562 * 20 19 17 41 41 H 1.09001 * 115.55272 * 34.41351 * 25 10 9 42 42 H 1.09004 * 117.50171 * 359.97438 * 26 25 10 43 43 H 1.09001 * 117.50114 * 145.02267 * 26 25 10 44 44 H 1.08997 * 117.49922 * 214.97679 * 27 25 10 45 45 H 1.08996 * 117.49497 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6024 -0.6068 0.0059 6 6 2.3539 -1.1320 0.0006 7 6 1.9590 -2.5864 0.0015 8 7 1.5983 -2.9967 -1.3622 9 6 1.2075 -4.4122 -1.3999 10 6 0.8404 -4.8019 -2.8333 11 1 -0.0464 -4.2495 -3.1441 12 7 1.9549 -4.4796 -3.7277 13 6 1.7246 -4.2497 -5.0355 14 8 0.5948 -4.3102 -5.4721 15 6 2.8712 -3.9187 -5.9558 16 16 2.2440 -3.6673 -7.6349 17 6 3.7508 -3.3049 -8.4733 18 1 4.6828 -3.2923 -7.9277 19 6 3.7401 -3.0368 -9.8351 20 7 4.8658 -2.7666 -10.4616 21 14 2.1282 -3.0594 -10.7789 22 1 1.5242 -1.7029 -10.7593 23 1 2.3829 -3.4676 -12.1838 24 1 1.1963 -4.0255 -10.1439 25 6 0.5539 -6.3035 -2.8961 26 6 1.5484 -7.1811 -3.6587 27 6 0.1680 -6.8929 -4.2543 28 1 -0.3634 0.0005 1.0276 29 1 -0.3634 0.8898 -0.5143 30 1 -0.3634 -0.8902 -0.5135 31 1 4.5338 -1.1534 0.0119 32 1 1.1042 -2.7303 0.6622 33 1 2.7958 -3.1898 0.3532 34 1 0.8676 -2.4094 -1.7351 35 1 0.3476 -4.5693 -0.7487 36 1 2.0394 -5.0281 -1.0581 37 1 2.8587 -4.4315 -3.3786 38 1 3.3627 -3.0089 -5.6111 39 1 3.5869 -4.7408 -5.9549 40 1 4.8584 -2.5789 -11.4131 41 1 0.0828 -6.7297 -2.0103 42 1 2.4066 -6.6886 -4.1161 43 1 1.7312 -8.1848 -3.2750 44 1 -0.5567 -7.7071 -4.2620 45 1 0.1178 -6.2107 -5.1029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483544994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:52 Heat of formation + Delta-G solvation = 51.777591 kcal Electronic energy + Delta-G solvation = -26708.841136 eV Core-core repulsion = 22856.929466 eV Total energy + Delta-G solvation = -3851.911670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.18805 -40.04317 -37.56097 -36.70564 -34.87777 -33.54604 -32.41839 -32.25088 -30.20649 -29.05920 -28.32737 -25.91945 -25.56357 -22.88757 -22.16728 -21.83866 -21.60576 -20.94488 -19.84841 -17.89242 -17.82426 -17.67881 -16.77713 -16.49226 -16.21648 -15.46475 -15.16269 -15.04707 -14.88379 -14.54692 -14.14605 -13.76384 -13.71843 -13.58587 -13.49861 -13.19891 -12.83754 -12.77799 -12.75190 -12.42968 -12.05618 -11.91734 -11.78571 -11.30904 -11.27649 -11.24174 -10.98991 -10.56761 -10.36217 -10.18945 -9.99487 -9.83824 -9.79090 -9.43252 -8.98560 -8.85954 -8.79535 -8.47298 -6.88485 -6.26813 -3.97936 1.23078 1.86699 2.80230 2.98811 3.00508 3.32291 3.35859 3.51576 3.66409 3.68928 3.87100 3.99801 4.18678 4.34882 4.46789 4.54991 4.67131 4.77370 4.86034 4.94714 5.01630 5.07536 5.09576 5.10154 5.12354 5.15126 5.17134 5.30950 5.35996 5.38961 5.48154 5.49647 5.74511 5.78549 5.79531 5.83767 5.92761 6.06296 6.17076 6.47629 6.48136 6.67099 6.91556 7.73117 7.96370 8.00898 8.44196 8.57381 9.19523 10.82573 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009441 B = 0.002998 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.102021 B = 9338.352558 C =11365.762798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.021 3.979 3 N -0.365 5.365 4 O 0.098 5.902 5 C -0.037 4.037 6 C -0.202 4.202 7 C 0.139 3.861 8 N -0.682 5.682 9 C 0.055 3.945 10 C 0.181 3.819 11 H 0.088 0.912 12 N -0.715 5.715 13 C 0.533 3.467 14 O -0.520 6.520 15 C -0.123 4.123 16 S -0.141 6.141 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.881 5.881 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.235 1.235 25 C -0.174 4.174 26 C -0.173 4.173 27 C -0.181 4.181 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.217 0.783 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.346 0.654 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.403 0.597 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.270 0.730 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.339 -3.313 26.653 27.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.139 4.139 3 N -0.071 5.071 4 O 0.034 5.966 5 C -0.119 4.119 6 C -0.206 4.206 7 C 0.010 3.990 8 N -0.314 5.314 9 C -0.075 4.075 10 C 0.075 3.925 11 H 0.106 0.894 12 N -0.368 5.368 13 C 0.320 3.680 14 O -0.396 6.396 15 C -0.274 4.274 16 S 0.085 5.915 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.518 5.518 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.194 4.194 26 C -0.211 4.211 27 C -0.218 4.218 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.234 0.766 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.165 0.835 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.238 0.762 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.123 0.877 42 H 0.115 0.885 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.690 -2.160 25.575 26.794 hybrid contribution 0.486 -0.720 0.498 1.001 sum -7.204 -2.880 26.073 27.203 Atomic orbital electron populations 1.20157 0.86147 1.03891 1.03181 1.23521 0.98936 0.88574 1.02870 1.73865 0.89467 1.24218 1.19552 1.84839 1.21498 1.23112 1.67179 1.25835 1.00780 0.83487 1.01822 1.21105 0.92464 0.97032 1.09992 1.20057 1.00453 0.88539 0.89966 1.60416 1.47164 1.03438 1.20345 1.22234 1.00240 0.89234 0.95759 1.20320 0.90935 0.92939 0.88269 0.89421 1.45808 1.10635 1.72509 1.07875 1.20217 0.90301 0.75471 0.82044 1.90626 1.23539 1.49944 1.75478 1.23268 0.99526 1.05059 0.99554 1.84740 1.15442 1.92390 0.98931 1.22327 0.92793 1.54905 0.96787 0.89445 1.24711 0.96745 0.93276 0.96569 1.69935 1.26026 1.45462 1.10368 0.86738 0.84349 0.80619 0.80161 1.19250 1.19998 1.15917 1.22662 1.05739 0.94231 0.96747 1.22920 0.94378 0.99626 1.04146 1.23380 0.97483 1.03386 0.97513 0.90257 0.90230 0.90425 0.76649 0.93782 0.89505 0.83513 0.93655 0.89965 0.76241 0.88596 0.88743 0.91973 0.87745 0.88526 0.89479 0.89606 0.85908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.39 36.00 0.37 -0.16 16 2 C 0.02 0.20 7.33 -82.10 -0.60 -0.40 16 3 N -0.37 -4.31 12.07 33.42 0.40 -3.91 16 4 O 0.10 1.02 11.20 17.17 0.19 1.22 16 5 C -0.04 -0.28 12.26 29.74 0.36 0.09 16 6 C -0.20 -1.61 5.84 -104.42 -0.61 -2.22 16 7 C 0.14 0.83 6.17 -4.98 -0.03 0.80 16 8 N -0.68 -4.99 6.21 -115.05 -0.71 -5.70 16 9 C 0.05 0.36 5.23 -3.82 -0.02 0.34 16 10 C 0.18 1.78 2.67 -67.93 -0.18 1.60 16 11 H 0.09 1.05 7.58 -51.93 -0.39 0.65 16 12 N -0.71 -8.33 3.34 -53.81 -0.18 -8.51 16 13 C 0.53 8.87 6.68 -10.99 -0.07 8.79 16 14 O -0.52 -10.35 12.89 5.56 0.07 -10.28 16 15 C -0.12 -2.35 6.16 36.01 0.22 -2.13 16 16 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 17 C -0.52 -15.02 10.04 30.94 0.31 -14.71 16 18 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 19 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.74 13.97 55.49 0.78 -25.96 16 21 Si 0.86 21.87 27.74 -169.99 -4.72 17.15 16 22 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 25 C -0.17 -1.71 5.70 -90.62 -0.52 -2.23 16 26 C -0.17 -1.90 9.74 -26.69 -0.26 -2.16 16 27 C -0.18 -2.30 9.83 -26.69 -0.26 -2.56 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.08 0.45 7.79 -51.93 -0.40 0.05 16 31 H 0.22 0.81 8.06 -52.49 -0.42 0.38 16 32 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.35 2.88 8.37 -39.29 -0.33 2.55 16 35 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.40 4.00 8.60 -40.81 -0.35 3.65 16 38 H 0.10 1.76 8.14 -51.92 -0.42 1.33 16 39 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 40 H 0.27 7.62 8.31 -40.82 -0.34 7.29 16 41 H 0.10 0.83 8.11 -51.93 -0.42 0.41 16 42 H 0.10 1.17 6.67 -51.93 -0.35 0.82 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.12 2.02 5.01 -51.93 -0.26 1.76 16 LS Contribution 388.41 15.07 5.85 5.85 Total: -1.00 -34.58 388.41 -8.42 -43.00 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.73 Total: 4.92 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -1.38 Total: -12.25 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.28 Total: -44.08 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.26 Total: -9.06 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.72 Total: 17.15 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.58 -8.42 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483544994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.781 kcal (2) G-P(sol) polarization free energy of solvation -34.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds