Wall clock time and date at job start Tue Mar 31 2020 22:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30174 * 126.80506 * 2 1 4 4 O 1.20922 * 111.61025 * 179.97438 * 3 2 1 5 5 C 1.34041 * 111.56172 * 359.76917 * 4 3 2 6 6 C 1.35449 * 106.44857 * 0.37100 * 5 4 3 7 7 C 1.50700 * 128.00890 * 179.91223 * 6 5 4 8 8 N 1.46899 * 109.46991 * 259.68365 * 7 6 5 9 9 C 1.46901 * 110.99727 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47113 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47002 * 294.99693 * 10 9 8 12 12 N 1.46492 * 109.47363 * 54.99819 * 10 9 8 13 13 C 1.34772 * 120.00385 * 205.00351 * 12 10 9 14 14 O 1.21278 * 119.99770 * 359.97438 * 13 12 10 15 15 C 1.50705 * 120.00486 * 180.02562 * 13 12 10 16 16 S 1.80999 * 109.47084 * 179.97438 * 15 13 12 17 17 C 1.76205 * 99.99558 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00158 * 0.02562 * 17 16 15 19 19 C 1.38801 * 119.99627 * 179.97438 * 17 16 15 20 20 N 1.31627 * 119.99964 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00154 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46964 * 89.99915 * 21 19 17 23 23 H 1.48499 * 109.46853 * 209.99997 * 21 19 17 24 24 H 1.48494 * 109.47003 * 329.99933 * 21 19 17 25 25 C 1.52997 * 109.47127 * 175.00119 * 10 9 8 26 26 C 1.52998 * 117.49757 * 248.74651 * 25 10 9 27 27 C 1.53003 * 117.49978 * 180.08465 * 25 10 9 28 28 H 1.09001 * 109.47601 * 270.02863 * 1 2 3 29 29 H 1.09008 * 109.47130 * 30.02549 * 1 2 3 30 30 H 1.09000 * 109.47331 * 150.02068 * 1 2 3 31 31 H 1.07997 * 126.77725 * 180.29061 * 5 4 3 32 32 H 1.08997 * 109.47222 * 139.68651 * 7 6 5 33 33 H 1.08995 * 109.46960 * 19.68599 * 7 6 5 34 34 H 1.00898 * 111.00143 * 303.95282 * 8 7 6 35 35 H 1.09000 * 109.47283 * 59.99928 * 9 8 7 36 36 H 1.09007 * 109.47373 * 299.99941 * 9 8 7 37 37 H 0.97012 * 120.00025 * 25.00061 * 12 10 9 38 38 H 1.08998 * 109.46823 * 299.99865 * 15 13 12 39 39 H 1.08996 * 109.47135 * 59.99371 * 15 13 12 40 40 H 0.96996 * 120.00809 * 180.02562 * 20 19 17 41 41 H 1.09001 * 115.55272 * 34.41351 * 25 10 9 42 42 H 1.09004 * 117.50171 * 359.97438 * 26 25 10 43 43 H 1.09001 * 117.50114 * 145.02267 * 26 25 10 44 44 H 1.08997 * 117.49922 * 214.97679 * 27 25 10 45 45 H 1.08996 * 117.49497 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6024 -0.6068 0.0059 6 6 2.3539 -1.1320 0.0006 7 6 1.9590 -2.5864 0.0015 8 7 1.5983 -2.9967 -1.3622 9 6 1.2075 -4.4122 -1.3999 10 6 0.8404 -4.8019 -2.8333 11 1 -0.0464 -4.2495 -3.1441 12 7 1.9549 -4.4796 -3.7277 13 6 1.7246 -4.2497 -5.0355 14 8 0.5948 -4.3102 -5.4721 15 6 2.8712 -3.9187 -5.9558 16 16 2.2440 -3.6673 -7.6349 17 6 3.7508 -3.3049 -8.4733 18 1 4.6828 -3.2923 -7.9277 19 6 3.7401 -3.0368 -9.8351 20 7 4.8658 -2.7666 -10.4616 21 14 2.1282 -3.0594 -10.7789 22 1 1.5242 -1.7029 -10.7593 23 1 2.3829 -3.4676 -12.1838 24 1 1.1963 -4.0255 -10.1439 25 6 0.5539 -6.3035 -2.8961 26 6 1.5484 -7.1811 -3.6587 27 6 0.1680 -6.8929 -4.2543 28 1 -0.3634 0.0005 1.0276 29 1 -0.3634 0.8898 -0.5143 30 1 -0.3634 -0.8902 -0.5135 31 1 4.5338 -1.1534 0.0119 32 1 1.1042 -2.7303 0.6622 33 1 2.7958 -3.1898 0.3532 34 1 0.8676 -2.4094 -1.7351 35 1 0.3476 -4.5693 -0.7487 36 1 2.0394 -5.0281 -1.0581 37 1 2.8587 -4.4315 -3.3786 38 1 3.3627 -3.0089 -5.6111 39 1 3.5869 -4.7408 -5.9549 40 1 4.8584 -2.5789 -11.4131 41 1 0.0828 -6.7297 -2.0103 42 1 2.4066 -6.6886 -4.1161 43 1 1.7312 -8.1848 -3.2750 44 1 -0.5567 -7.7071 -4.2620 45 1 0.1178 -6.2107 -5.1029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483544994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:51 Heat of formation + Delta-G solvation = 27.487530 kcal Electronic energy + Delta-G solvation = -26709.894432 eV Core-core repulsion = 22856.929466 eV Total energy + Delta-G solvation = -3852.964966 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.86746 -41.15667 -38.49396 -37.43703 -35.58607 -34.67800 -34.51059 -32.97218 -31.33666 -29.72536 -29.33020 -27.84291 -26.53579 -23.56756 -23.03610 -22.46831 -22.22175 -22.10215 -20.81499 -19.85517 -18.53980 -18.39538 -17.84483 -17.54783 -17.33096 -17.07047 -16.22088 -15.94251 -15.75173 -15.66426 -15.52930 -14.93744 -14.72158 -14.52911 -14.39146 -14.20430 -14.08720 -13.51627 -13.40810 -13.33465 -13.30189 -13.07501 -13.01721 -12.73466 -12.60822 -12.46426 -12.17441 -11.91746 -11.86229 -11.26139 -11.17094 -10.90179 -10.82357 -10.75090 -10.51792 -10.42280 -9.89398 -9.34324 -8.97070 -8.51465 -6.21135 0.62097 1.01206 1.23403 1.30832 1.46867 1.57771 1.67194 2.24223 2.33335 2.45292 2.73891 2.86893 2.94847 3.18547 3.35587 3.62644 3.82472 3.96501 4.04003 4.05141 4.12382 4.14638 4.25790 4.36649 4.38337 4.49696 4.54995 4.58522 4.60871 4.67707 4.76531 4.80345 4.89242 4.91367 4.98062 5.03777 5.08562 5.25244 5.29776 5.45260 5.63312 5.70870 6.03391 6.11528 6.32747 6.62931 6.93935 7.34845 7.36471 8.61232 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009441 B = 0.002998 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.102021 B = 9338.352558 C =11365.762798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.009 3.991 3 N -0.408 5.408 4 O 0.077 5.923 5 C -0.034 4.034 6 C -0.209 4.209 7 C 0.145 3.855 8 N -0.694 5.694 9 C 0.067 3.933 10 C 0.179 3.821 11 H 0.067 0.933 12 N -0.690 5.690 13 C 0.538 3.462 14 O -0.555 6.555 15 C -0.111 4.111 16 S -0.171 6.171 17 C -0.529 4.529 18 H 0.060 0.940 19 C 0.045 3.955 20 N -0.918 5.918 21 Si 0.914 3.086 22 H -0.263 1.263 23 H -0.259 1.259 24 H -0.236 1.236 25 C -0.150 4.150 26 C -0.169 4.169 27 C -0.211 4.211 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.252 0.748 32 H 0.057 0.943 33 H 0.106 0.894 34 H 0.339 0.661 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.415 0.585 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.277 0.723 41 H 0.137 0.863 42 H 0.083 0.917 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.011 -4.963 29.199 30.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.150 4.150 3 N -0.117 5.117 4 O 0.016 5.984 5 C -0.116 4.116 6 C -0.213 4.213 7 C 0.017 3.983 8 N -0.325 5.325 9 C -0.062 4.062 10 C 0.074 3.926 11 H 0.085 0.915 12 N -0.342 5.342 13 C 0.323 3.677 14 O -0.434 6.434 15 C -0.262 4.262 16 S 0.055 5.945 17 C -0.677 4.677 18 H 0.078 0.922 19 C -0.160 4.160 20 N -0.557 5.557 21 Si 0.736 3.264 22 H -0.188 1.188 23 H -0.183 1.183 24 H -0.160 1.160 25 C -0.169 4.169 26 C -0.206 4.206 27 C -0.248 4.248 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.268 0.732 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.156 0.844 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.252 0.748 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.086 0.914 41 H 0.154 0.846 42 H 0.101 0.899 43 H 0.125 0.875 44 H 0.113 0.887 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.318 -3.823 28.169 29.620 hybrid contribution 0.754 -0.241 -0.156 0.807 sum -7.563 -4.064 28.014 29.300 Atomic orbital electron populations 1.20254 0.84842 1.04098 1.04193 1.24061 1.00072 0.88927 1.01907 1.73860 0.90227 1.25805 1.21839 1.84783 1.21171 1.24698 1.67734 1.26590 1.02257 0.82528 1.00186 1.21416 0.92175 0.97773 1.09956 1.20118 1.01640 0.87222 0.89354 1.60424 1.47065 1.03665 1.21390 1.22164 1.01882 0.89028 0.93173 1.20517 0.89389 0.92978 0.89715 0.91471 1.45585 1.12083 1.70392 1.06166 1.19756 0.88756 0.75824 0.83356 1.90634 1.24465 1.51927 1.76378 1.23259 1.00756 1.06089 0.96110 1.84634 1.14127 1.92451 1.03282 1.22489 0.93406 1.54522 0.97270 0.92210 1.25566 0.99890 0.92974 0.97557 1.70015 1.28000 1.46550 1.11086 0.85867 0.80370 0.80705 0.79425 1.18821 1.18333 1.15960 1.22759 1.04119 0.93822 0.96223 1.22942 0.93004 1.00861 1.03832 1.23264 0.99418 1.03936 0.98158 0.88775 0.91185 0.89022 0.73212 0.92464 0.87597 0.84371 0.91380 0.88155 0.74783 0.87714 0.87480 0.91397 0.84555 0.89884 0.87515 0.88738 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.39 71.23 0.74 -0.26 16 2 C 0.01 0.17 7.33 43.58 0.32 0.49 16 3 N -0.41 -9.72 12.07 -49.55 -0.60 -10.32 16 4 O 0.08 1.60 11.20 71.62 0.80 2.40 16 5 C -0.03 -0.45 12.26 67.17 0.82 0.37 16 6 C -0.21 -2.89 5.84 -19.74 -0.12 -3.00 16 7 C 0.15 1.19 6.17 85.56 0.53 1.71 16 8 N -0.69 -7.75 6.21 -517.92 -3.22 -10.97 16 9 C 0.07 0.58 5.23 86.31 0.45 1.04 16 10 C 0.18 3.02 2.67 44.99 0.12 3.14 16 11 H 0.07 1.49 7.58 -2.39 -0.02 1.47 16 12 N -0.69 -14.64 3.34 -442.55 -1.48 -16.11 16 13 C 0.54 17.51 6.68 87.66 0.59 18.10 16 14 O -0.56 -22.23 12.89 -3.02 -0.04 -22.27 16 15 C -0.11 -4.19 6.16 71.24 0.44 -3.75 16 16 S -0.17 -8.68 18.55 -56.49 -1.05 -9.73 16 17 C -0.53 -31.17 10.04 67.95 0.68 -30.49 16 18 H 0.06 3.73 8.03 -2.91 -0.02 3.70 16 19 C 0.05 2.69 5.50 84.86 0.47 3.16 16 20 N -0.92 -56.58 13.97 21.65 0.30 -56.27 16 21 Si 0.91 45.52 27.74 68.60 1.90 47.42 16 22 H -0.26 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.24 -11.67 6.74 99.48 0.67 -11.00 16 25 C -0.15 -2.47 5.70 -10.79 -0.06 -2.53 16 26 C -0.17 -3.28 9.74 30.62 0.30 -2.99 16 27 C -0.21 -5.12 9.83 30.62 0.30 -4.82 16 28 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.09 0.90 7.79 -2.39 -0.02 0.88 16 31 H 0.25 1.10 8.06 -2.91 -0.02 1.08 16 32 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.34 4.77 8.37 -89.70 -0.75 4.02 16 35 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.42 7.01 8.60 -92.70 -0.80 6.22 16 38 H 0.10 3.77 8.14 -2.40 -0.02 3.75 16 39 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 40 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 41 H 0.14 1.47 8.11 -2.39 -0.02 1.45 16 42 H 0.08 1.84 6.67 -2.38 -0.02 1.82 16 43 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.08 2.79 5.01 -2.39 -0.01 2.78 16 Total: -1.00 -78.59 388.41 1.65 -76.94 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -0.56 Total: 18.75 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 5.58 Total: -19.83 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -4.99 Total: -93.67 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: 0.76 Total: -19.87 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.90 Total: 47.42 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.05 Total: -9.73 kcal Total: -78.59 1.65 -76.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483544994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.432 kcal (2) G-P(sol) polarization free energy of solvation -78.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds