Wall clock time and date at job start Tue Mar 31 2020 22:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30247 * 125.62314 * 2 1 4 4 C 1.34473 * 108.70416 * 180.14393 * 3 2 1 5 5 C 1.50698 * 126.16826 * 179.82370 * 4 3 2 6 6 N 1.46902 * 109.47196 * 269.69476 * 5 4 3 7 7 C 1.46903 * 111.00100 * 181.32473 * 6 5 4 8 8 C 1.53004 * 115.54508 * 82.14197 * 7 6 5 9 9 N 1.46504 * 109.47331 * 35.37034 * 8 7 6 10 10 C 1.34767 * 119.99778 * 184.89377 * 9 8 7 11 11 O 1.21278 * 120.00649 * 359.97438 * 10 9 8 12 12 C 1.50700 * 119.99681 * 180.02562 * 10 9 8 13 13 S 1.81008 * 109.47128 * 179.97438 * 12 10 9 14 14 C 1.76196 * 99.99902 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00376 * 359.97438 * 14 13 12 16 16 C 1.38804 * 119.99921 * 180.02562 * 14 13 12 17 17 N 1.31625 * 119.99943 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99838 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47219 * 89.99862 * 18 16 14 20 20 H 1.48501 * 109.46663 * 209.99970 * 18 16 14 21 21 H 1.48501 * 109.47257 * 329.99626 * 18 16 14 22 22 C 1.52992 * 117.50185 * 296.47452 * 7 6 5 23 23 C 1.53001 * 60.03289 * 252.49565 * 22 7 6 24 24 C 1.34332 * 107.66732 * 359.56832 * 4 3 2 25 25 C 1.50699 * 126.44321 * 180.24124 * 24 4 3 26 26 O 1.33969 * 125.61526 * 179.65710 * 2 1 3 27 27 H 1.08996 * 109.47161 * 180.31768 * 1 2 3 28 28 H 1.09005 * 109.46745 * 300.31682 * 1 2 3 29 29 H 1.09005 * 109.47038 * 60.31198 * 1 2 3 30 30 H 1.09000 * 109.47596 * 149.69525 * 5 4 3 31 31 H 1.09001 * 109.47487 * 29.69549 * 5 4 3 32 32 H 1.00899 * 110.99863 * 57.37624 * 6 5 4 33 33 H 1.09007 * 109.46788 * 155.36745 * 8 7 6 34 34 H 1.09002 * 109.47314 * 275.36625 * 8 7 6 35 35 H 0.97005 * 119.99535 * 4.89053 * 9 8 7 36 36 H 1.09000 * 109.47062 * 299.99771 * 12 10 9 37 37 H 1.08995 * 109.47370 * 59.99720 * 12 10 9 38 38 H 0.96996 * 120.00095 * 180.02562 * 17 16 14 39 39 H 1.09007 * 117.50114 * 0.02562 * 22 7 6 40 40 H 1.09000 * 117.49993 * 144.99510 * 22 7 6 41 41 H 1.09001 * 117.49495 * 107.50128 * 23 22 7 42 42 H 1.08995 * 117.49617 * 252.51826 * 23 22 7 43 43 H 1.08994 * 109.47512 * 89.99887 * 25 24 4 44 44 H 1.09007 * 109.46858 * 210.00042 * 25 24 4 45 45 H 1.08995 * 109.47025 * 329.99490 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2657 1.0587 0.0000 4 6 3.5522 0.6674 -0.0032 5 6 4.7571 1.5725 -0.0081 6 7 5.1490 1.8586 -1.3946 7 6 6.3419 2.7148 -1.4386 8 6 7.6799 1.9912 -1.2736 9 7 7.6072 0.6773 -1.9176 10 6 8.6406 -0.1816 -1.8147 11 8 9.6309 0.1332 -1.1895 12 6 8.5660 -1.5329 -2.4776 13 16 10.0962 -2.4461 -2.1599 14 6 9.7448 -3.9416 -3.0228 15 1 8.8011 -4.0610 -3.5344 16 6 10.6803 -4.9668 -3.0442 17 7 11.8297 -4.8219 -2.4194 18 14 10.3080 -6.5520 -3.9597 19 1 10.7733 -6.4331 -5.3648 20 1 11.0105 -7.6815 -3.2994 21 1 8.8442 -6.8015 -3.9424 22 6 6.2231 4.1226 -0.8515 23 6 6.3056 3.9311 -2.3672 24 6 3.5698 -0.6758 0.0044 25 6 4.7937 -1.5550 0.0094 26 8 2.2872 -1.0891 0.0065 27 1 -0.3633 -1.0276 0.0057 28 1 -0.3633 0.5188 0.8872 29 1 -0.3633 0.5090 -0.8928 30 1 5.5821 1.0821 0.5088 31 1 4.5130 2.5052 0.5003 32 1 4.3862 2.2749 -1.9074 33 1 8.4711 2.5801 -1.7378 34 1 7.8961 1.8645 -0.2128 35 1 6.8151 0.4256 -2.4179 36 1 7.7199 -2.0893 -2.0741 37 1 8.4367 -1.4039 -3.5521 38 1 12.4836 -5.5382 -2.4347 39 1 5.2599 4.4135 -0.4322 40 1 7.0981 4.5334 -0.3477 41 1 5.3965 4.0962 -2.9455 42 1 7.2350 4.2156 -2.8605 43 1 5.0889 -1.7612 1.0382 44 1 4.5694 -2.4928 -0.4991 45 1 5.6079 -1.0472 -0.5074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483716787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:32 Heat of formation + Delta-G solvation = 7.244063 kcal Electronic energy + Delta-G solvation = -26738.097761 eV Core-core repulsion = 22884.254972 eV Total energy + Delta-G solvation = -3853.842788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.56215 -39.64370 -38.40793 -35.58598 -34.09108 -33.83101 -32.40548 -32.27182 -30.36342 -29.68907 -27.10878 -26.25976 -25.37277 -24.50519 -22.82003 -21.85411 -20.78882 -20.20324 -19.95968 -17.79505 -17.14482 -16.88814 -16.48216 -16.28726 -15.90521 -15.11548 -14.95170 -14.78220 -14.70064 -14.42407 -14.20749 -13.82440 -13.71841 -13.30487 -13.28076 -13.21898 -13.02350 -12.92182 -12.66853 -12.53236 -12.40364 -11.95616 -11.89789 -11.69623 -11.36328 -11.14018 -11.04784 -10.99886 -10.74837 -10.71482 -10.33192 -9.78833 -9.33263 -9.04685 -8.88368 -8.73936 -8.64228 -8.19584 -6.46683 -6.19481 -3.89346 1.22223 2.30471 2.44933 3.04645 3.18612 3.23755 3.26654 3.30978 3.42569 3.62518 3.82831 3.90819 4.22922 4.38831 4.44371 4.51508 4.56819 4.61789 4.85878 4.99076 5.01860 5.15694 5.22076 5.23371 5.24818 5.30941 5.35218 5.40093 5.47431 5.51701 5.55516 5.61930 5.65219 5.75442 5.83920 5.85812 5.93617 5.96851 6.07200 6.20366 6.52519 6.78719 6.96060 7.52003 7.62017 7.91807 8.37658 8.73114 9.26015 10.87919 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010183 B = 0.002911 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.130462 B = 9615.043849 C =11872.912829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.179 3.821 3 N -0.478 5.478 4 C -0.023 4.023 5 C 0.148 3.852 6 N -0.645 5.645 7 C 0.038 3.962 8 C 0.172 3.828 9 N -0.724 5.724 10 C 0.529 3.471 11 O -0.524 6.524 12 C -0.151 4.151 13 S -0.061 6.061 14 C -0.534 4.534 15 H 0.072 0.928 16 C 0.073 3.927 17 N -0.868 5.868 18 Si 0.917 3.083 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C -0.202 4.202 23 C -0.167 4.167 24 C -0.013 4.013 25 C -0.075 4.075 26 O -0.202 6.202 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.349 0.651 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.407 0.593 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.268 0.732 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.969 15.004 3.902 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.028 4.028 3 N -0.208 5.208 4 C -0.142 4.142 5 C 0.019 3.981 6 N -0.275 5.275 7 C -0.055 4.055 8 C 0.047 3.953 9 N -0.379 5.379 10 C 0.315 3.685 11 O -0.399 6.399 12 C -0.302 4.302 13 S 0.166 5.834 14 C -0.682 4.682 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.744 3.256 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.197 1.197 22 C -0.241 4.241 23 C -0.205 4.205 24 C -0.067 4.067 25 C -0.132 4.132 26 O -0.089 6.089 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.168 0.832 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.243 0.757 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.104 0.896 44 H 0.101 0.899 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.051 15.418 4.933 25.770 hybrid contribution -2.017 -1.248 -1.311 2.710 sum -22.067 14.170 3.623 26.474 Atomic orbital electron populations 1.20206 0.81472 1.04627 1.04811 1.26109 0.96309 0.78691 1.01706 1.70244 1.01665 1.30474 1.18455 1.21190 0.92558 0.92080 1.08403 1.20054 0.91705 0.96427 0.89885 1.60114 1.06765 1.47539 1.13132 1.21906 0.92401 0.85806 1.05380 1.20615 0.92273 0.84049 0.98393 1.45818 1.20290 1.15637 1.56167 1.20298 0.82370 0.85695 0.80166 1.90697 1.31127 1.77094 1.41002 1.23510 1.07566 0.96022 1.03095 1.85388 1.14574 1.13256 1.70197 1.22871 1.05678 1.01334 1.38351 0.90970 1.24983 0.94493 0.98612 0.95491 1.70016 1.06536 1.33333 1.40451 0.86189 0.78519 0.81412 0.79509 1.20305 1.20799 1.19696 1.23525 1.03828 1.00262 0.96522 1.23356 1.04106 1.00013 0.93019 1.23359 0.83639 0.95121 1.04584 1.20418 0.89957 0.98637 1.04145 1.84414 1.16796 1.37719 1.69995 0.89469 0.88738 0.88688 0.88980 0.93101 0.83184 0.91229 0.91257 0.75712 0.89385 0.89369 0.92231 0.88563 0.87969 0.88492 0.87662 0.89593 0.89941 0.88064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.29 10.51 36.01 0.38 0.09 16 2 C 0.18 1.84 8.34 -12.95 -0.11 1.73 16 3 N -0.48 -5.60 11.29 -7.36 -0.08 -5.68 16 4 C -0.02 -0.26 6.63 -82.81 -0.55 -0.81 16 5 C 0.15 1.43 5.66 -4.98 -0.03 1.40 16 6 N -0.64 -5.75 5.62 -101.18 -0.57 -6.32 16 7 C 0.04 0.33 2.14 -131.56 -0.28 0.05 16 8 C 0.17 1.99 5.87 -4.04 -0.02 1.96 16 9 N -0.72 -9.69 5.40 -60.29 -0.33 -10.01 16 10 C 0.53 9.71 7.85 -10.99 -0.09 9.62 16 11 O -0.52 -11.74 15.86 5.56 0.09 -11.65 16 12 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 13 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 14 C -0.53 -15.12 9.50 30.94 0.29 -14.83 16 15 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 16 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 17 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 18 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 22 C -0.20 -1.50 9.58 -26.73 -0.26 -1.75 16 23 C -0.17 -1.24 9.87 -26.69 -0.26 -1.51 16 24 C -0.01 -0.15 7.39 -35.69 -0.26 -0.41 16 25 C -0.07 -0.76 10.04 36.01 0.36 -0.40 16 26 O -0.20 -2.37 10.78 5.36 0.06 -2.31 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.92 7.79 -51.93 -0.40 0.52 16 31 H 0.05 0.49 7.39 -51.93 -0.38 0.10 16 32 H 0.35 3.05 8.50 -39.29 -0.33 2.72 16 33 H 0.07 0.83 7.91 -51.93 -0.41 0.42 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.41 4.83 7.76 -40.82 -0.32 4.51 16 36 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 37 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.10 0.69 7.74 -51.93 -0.40 0.29 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 0.65 8.07 -51.93 -0.42 0.23 16 42 H 0.11 0.77 8.06 -51.93 -0.42 0.36 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.08 0.81 8.14 -51.92 -0.42 0.38 16 45 H 0.10 1.06 7.80 -51.93 -0.40 0.66 16 LS Contribution 399.05 15.07 6.01 6.01 Total: -1.00 -35.12 399.05 -8.86 -43.99 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -6.84 Total: 4.51 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -0.70 Total: -5.66 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.24 Total: -47.40 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.15 Total: -13.96 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.12 -8.86 -43.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483716787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.230 kcal (2) G-P(sol) polarization free energy of solvation -35.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds