Wall clock time and date at job start Tue Mar 31 2020 22:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34333 * 126.44701 * 2 1 4 4 N 1.34474 * 107.66851 * 179.97438 * 3 2 1 5 5 C 1.30248 * 108.70197 * 359.97438 * 4 3 2 6 6 C 1.50709 * 125.61991 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.47156 * 165.02036 * 6 5 4 8 8 C 1.52996 * 109.46846 * 285.02456 * 6 5 4 9 9 N 1.46901 * 109.47052 * 45.02288 * 6 5 4 10 10 C 1.47476 * 111.00332 * 164.51567 * 9 6 5 11 11 C 1.53504 * 87.93656 * 221.29769 * 10 9 6 12 12 N 1.46503 * 114.17315 * 272.37979 * 11 10 9 13 13 C 1.46505 * 119.99729 * 33.83270 * 12 11 10 14 14 C 1.34777 * 120.00401 * 213.84503 * 12 11 10 15 15 O 1.21282 * 119.99554 * 359.97438 * 14 12 11 16 16 C 1.50690 * 120.00269 * 179.97438 * 14 12 11 17 17 S 1.80998 * 109.47250 * 179.97438 * 16 14 12 18 18 C 1.76199 * 100.00232 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00157 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00116 * 180.02562 * 18 17 16 21 21 N 1.31626 * 119.99857 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99814 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47169 * 60.00299 * 22 20 18 24 24 H 1.48506 * 109.47041 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47309 * 299.99724 * 22 20 18 26 26 C 1.47487 * 110.99983 * 68.54347 * 9 6 5 27 27 O 1.33960 * 108.76469 * 0.22687 * 5 4 3 28 28 H 1.08996 * 109.47102 * 90.02684 * 1 2 3 29 29 H 1.09002 * 109.47657 * 210.02912 * 1 2 3 30 30 H 1.09002 * 109.46960 * 330.02799 * 1 2 3 31 31 H 1.08001 * 126.15941 * 359.94550 * 3 2 1 32 32 H 1.09007 * 109.47300 * 55.60330 * 8 6 5 33 33 H 1.08993 * 109.47128 * 295.59845 * 8 6 5 34 34 H 1.09005 * 109.46803 * 175.60328 * 8 6 5 35 35 H 1.08996 * 113.47585 * 336.06845 * 10 9 6 36 36 H 1.09000 * 113.47305 * 106.52760 * 10 9 6 37 37 H 1.08998 * 114.34475 * 139.68139 * 11 10 9 38 38 H 1.09001 * 109.46381 * 90.00962 * 13 12 11 39 39 H 1.09002 * 109.47118 * 210.00455 * 13 12 11 40 40 H 1.08996 * 109.47453 * 330.00759 * 13 12 11 41 41 H 1.08998 * 109.47497 * 299.99591 * 16 14 12 42 42 H 1.08996 * 109.47350 * 59.99552 * 16 14 12 43 43 H 0.97005 * 119.99829 * 180.02562 * 21 20 18 44 44 H 1.09000 * 113.47890 * 253.47176 * 26 9 6 45 45 H 1.08996 * 113.47176 * 23.88029 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0006 5 6 3.5764 -0.6548 0.0015 6 6 4.8004 -1.5342 0.0018 7 1 4.5163 -2.5522 0.2682 8 6 5.4323 -1.5290 -1.3915 9 7 5.7695 -1.0242 0.9810 10 6 6.7999 -2.0356 1.2809 11 6 6.6942 -1.6252 2.7563 12 7 7.5677 -0.5111 3.1332 13 6 7.8534 0.5542 2.1689 14 6 8.1087 -0.4664 4.3668 15 8 7.8720 -1.3483 5.1650 16 6 9.0077 0.6793 4.7542 17 16 9.5702 0.4547 6.4598 18 6 10.5732 1.8917 6.6430 19 1 10.6797 2.5843 5.8212 20 6 11.2274 2.1331 7.8432 21 7 11.0989 1.2883 8.8443 22 14 12.2902 3.6570 8.0375 23 1 11.4586 4.8699 7.8320 24 1 12.8734 3.6829 9.4030 25 1 13.3830 3.6298 7.0325 26 6 5.2730 -1.2027 2.3582 27 8 2.3075 -1.0840 -0.0035 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3634 -0.8897 0.5143 30 1 -0.3633 0.8903 0.5134 31 1 1.9821 2.1112 -0.0008 32 1 5.6451 -0.5024 -1.6902 33 1 4.7425 -1.9795 -2.1050 34 1 6.3598 -2.1013 -1.3719 35 1 6.4735 -3.0579 1.0901 36 1 7.7698 -1.8123 0.8365 37 1 6.7320 -2.4583 3.4582 38 1 7.1084 1.3437 2.2686 39 1 8.8448 0.9637 2.3630 40 1 7.8195 0.1481 1.1580 41 1 9.8697 0.7063 4.0876 42 1 8.4570 1.6164 4.6740 43 1 11.5557 1.4572 9.6832 44 1 4.9489 -0.2735 2.8269 45 1 4.5383 -2.0020 2.4547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483851838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:49 Heat of formation + Delta-G solvation = 41.446750 kcal Electronic energy + Delta-G solvation = -26801.989651 eV Core-core repulsion = 22949.630003 eV Total energy + Delta-G solvation = -3852.359649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.64143 -41.04232 -38.69691 -35.38546 -34.84887 -33.58335 -32.39600 -32.07965 -29.34377 -27.52849 -27.35672 -26.27120 -25.66924 -25.40013 -23.74451 -22.13761 -21.03451 -20.69957 -18.57287 -17.79218 -17.49374 -17.10329 -16.80069 -16.48755 -15.58248 -15.53463 -15.26204 -14.77994 -14.72775 -14.48602 -14.03453 -13.82042 -13.55618 -13.42400 -13.36273 -12.98988 -12.78761 -12.71344 -12.56232 -12.47494 -12.30270 -11.97037 -11.87798 -11.83332 -11.55820 -11.23603 -11.02735 -11.00705 -10.99371 -10.73068 -10.68539 -9.78270 -9.43268 -9.19059 -9.02634 -8.97581 -8.44702 -8.19344 -6.46535 -6.18288 -3.88593 1.10183 2.18620 2.43660 2.91554 3.04230 3.26263 3.28003 3.31526 3.55217 3.64674 3.68429 4.23788 4.29079 4.39706 4.42105 4.54519 4.57691 4.69583 4.90630 4.94089 4.95648 4.99555 5.08479 5.12565 5.16701 5.22975 5.32285 5.35627 5.40415 5.51543 5.55873 5.63820 5.70137 5.72619 5.74511 5.83795 5.88496 5.97779 6.05050 6.05817 6.20706 6.54377 6.72749 7.51038 7.60813 7.63250 8.38559 8.58601 9.26909 10.89080 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019765 B = 0.002138 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.277393 B =13095.638976 C =13538.683463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.052 4.052 3 C -0.044 4.044 4 N -0.448 5.448 5 C 0.190 3.810 6 C 0.147 3.853 7 H 0.074 0.926 8 C -0.138 4.138 9 N -0.445 5.445 10 C -0.012 4.012 11 C 0.127 3.873 12 N -0.599 5.599 13 C 0.086 3.914 14 C 0.536 3.464 15 O -0.518 6.518 16 C -0.148 4.148 17 S -0.063 6.063 18 C -0.534 4.534 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.017 4.017 27 O -0.205 6.205 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.182 0.818 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.091 0.909 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.548 -5.635 -23.498 30.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C -0.183 4.183 4 N -0.176 5.176 5 C -0.017 4.017 6 C 0.037 3.963 7 H 0.092 0.908 8 C -0.196 4.196 9 N -0.169 5.169 10 C -0.141 4.141 11 C 0.021 3.979 12 N -0.334 5.334 13 C -0.057 4.057 14 C 0.324 3.676 15 O -0.393 6.393 16 C -0.298 4.298 17 S 0.164 5.836 18 C -0.682 4.682 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.147 4.147 27 O -0.092 6.092 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.200 0.800 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.135 0.865 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.110 0.890 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.141 -5.986 -22.409 29.446 hybrid contribution -0.214 1.029 -0.704 1.265 sum -18.355 -4.957 -23.113 29.928 Atomic orbital electron populations 1.20267 0.83982 1.04456 1.03706 1.23485 0.94998 0.84657 1.07379 1.23194 0.87975 1.00390 1.06733 1.70459 1.22276 1.08895 1.16012 1.25869 0.83609 0.90448 1.01822 1.20528 0.85384 0.93283 0.97086 0.90799 1.21777 1.00842 1.04164 0.92822 1.69227 1.07281 1.37890 1.02498 1.24356 0.98247 0.95416 0.96091 1.21834 0.89401 0.91055 0.95602 1.47448 1.48445 1.23726 1.13736 1.21776 1.00798 0.89950 0.93170 1.20380 0.79650 0.87094 0.80438 1.90684 1.60071 1.38987 1.49513 1.23540 1.00770 0.98763 1.06750 1.85363 1.60816 1.33545 1.03870 1.22823 1.33792 1.09543 1.02082 0.90968 1.24989 0.96375 0.97407 0.94827 1.70011 1.41405 1.35463 1.03465 0.86228 0.80019 0.81849 0.77431 1.19942 1.20849 1.19929 1.24373 0.97843 1.02560 0.89896 1.84363 1.17868 1.36827 1.70188 0.89867 0.90383 0.88884 0.80045 0.90550 0.91876 0.90754 0.89834 0.88332 0.86470 0.92678 0.91375 0.90051 0.89135 0.89180 0.92173 0.89044 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.43 36.00 0.38 0.06 16 2 C -0.05 -0.46 7.39 -35.69 -0.26 -0.73 16 3 C -0.04 -0.44 11.80 -17.77 -0.21 -0.65 16 4 N -0.45 -5.50 11.28 -11.10 -0.13 -5.63 16 5 C 0.19 2.07 6.56 -12.95 -0.08 1.98 16 6 C 0.15 1.27 2.21 -68.86 -0.15 1.12 16 7 H 0.07 0.53 7.56 -51.93 -0.39 0.14 16 8 C -0.14 -0.97 9.34 37.16 0.35 -0.62 16 9 N -0.44 -4.33 4.68 -238.00 -1.11 -5.44 16 10 C -0.01 -0.10 6.03 -7.55 -0.05 -0.15 16 11 C 0.13 1.53 4.67 -67.72 -0.32 1.22 16 12 N -0.60 -8.75 3.11 -173.62 -0.54 -9.29 16 13 C 0.09 1.05 9.33 59.85 0.56 1.61 16 14 C 0.54 10.36 7.69 -10.99 -0.08 10.28 16 15 O -0.52 -11.84 15.37 5.56 0.09 -11.75 16 16 C -0.15 -3.08 4.71 36.00 0.17 -2.91 16 17 S -0.06 -1.72 20.57 -107.50 -2.21 -3.94 16 18 C -0.53 -15.37 9.50 30.94 0.29 -15.08 16 19 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 22 Si 0.92 21.62 29.55 -169.99 -5.02 16.59 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 C -0.02 -0.18 6.77 -7.54 -0.05 -0.23 16 27 O -0.21 -2.18 10.78 5.37 0.06 -2.12 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.42 7.62 -51.93 -0.40 0.03 16 35 H 0.08 0.53 7.68 -51.93 -0.40 0.14 16 36 H 0.10 0.82 7.25 -51.93 -0.38 0.44 16 37 H 0.12 1.54 7.28 -51.93 -0.38 1.16 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.82 6.44 -51.93 -0.33 0.48 16 40 H 0.08 0.86 5.68 -51.93 -0.29 0.56 16 41 H 0.09 1.74 7.40 -51.92 -0.38 1.36 16 42 H 0.09 1.78 8.11 -51.92 -0.42 1.36 16 43 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.08 0.73 7.79 -51.93 -0.40 0.33 16 LS Contribution 385.80 15.07 5.81 5.81 Total: -1.00 -36.24 385.80 -8.59 -44.83 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.71 Total: -1.33 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 0.44 Total: -2.09 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: -1.05 Total: -46.00 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.14 Total: -13.88 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.24 -8.59 -44.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483851838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.273 kcal (2) G-P(sol) polarization free energy of solvation -36.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds