Wall clock time and date at job start Tue Mar 31 2020 22:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34326 * 126.44299 * 2 1 4 4 N 1.34476 * 107.66865 * 179.76714 * 3 2 1 5 5 C 1.30258 * 108.69802 * 0.41871 * 4 3 2 6 6 C 1.50701 * 125.61675 * 179.83946 * 5 4 3 7 7 H 1.09002 * 109.47060 * 194.69427 * 6 5 4 8 8 C 1.52997 * 109.47212 * 74.69372 * 6 5 4 9 9 N 1.46896 * 109.47239 * 314.69581 * 6 5 4 10 10 C 1.47481 * 111.00019 * 275.96962 * 9 6 5 11 11 C 1.53509 * 87.93525 * 221.29989 * 10 9 6 12 12 N 1.46507 * 114.16649 * 272.37516 * 11 10 9 13 13 C 1.46498 * 120.00016 * 33.84223 * 12 11 10 14 14 C 1.34771 * 119.99990 * 213.83690 * 12 11 10 15 15 O 1.21289 * 120.00123 * 0.02562 * 14 12 11 16 16 C 1.50706 * 120.00260 * 180.02562 * 14 12 11 17 17 S 1.80993 * 109.47332 * 180.02562 * 16 14 12 18 18 C 1.76194 * 100.00087 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00320 * 0.02562 * 18 17 16 20 20 C 1.38797 * 120.00244 * 179.97438 * 18 17 16 21 21 N 1.31637 * 120.00039 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00159 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47237 * 60.00124 * 22 20 18 24 24 H 1.48500 * 109.47065 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47125 * 300.00134 * 22 20 18 26 26 C 1.47480 * 111.00167 * 180.02562 * 9 6 5 27 27 O 1.33964 * 108.76151 * 359.57738 * 5 4 3 28 28 H 1.09000 * 109.47410 * 269.97769 * 1 2 3 29 29 H 1.09005 * 109.46949 * 29.97865 * 1 2 3 30 30 H 1.08997 * 109.47298 * 149.98156 * 1 2 3 31 31 H 1.08002 * 126.16388 * 0.02562 * 3 2 1 32 32 H 1.09002 * 109.47153 * 299.99998 * 8 6 5 33 33 H 1.08998 * 109.47533 * 59.99628 * 8 6 5 34 34 H 1.08996 * 109.47853 * 179.97438 * 8 6 5 35 35 H 1.09006 * 113.47701 * 336.06557 * 10 9 6 36 36 H 1.09005 * 113.48104 * 106.52667 * 10 9 6 37 37 H 1.08998 * 114.17593 * 139.67486 * 11 10 9 38 38 H 1.09002 * 109.47132 * 89.99958 * 13 12 11 39 39 H 1.09002 * 109.47053 * 209.99723 * 13 12 11 40 40 H 1.08997 * 109.46943 * 329.99761 * 13 12 11 41 41 H 1.09003 * 109.46945 * 300.00640 * 16 14 12 42 42 H 1.09003 * 109.46799 * 60.00298 * 16 14 12 43 43 H 0.96997 * 119.99783 * 180.02562 * 21 20 18 44 44 H 1.08992 * 113.47933 * 253.46644 * 26 9 6 45 45 H 1.09008 * 113.47320 * 23.87595 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 0.0052 5 6 3.5765 -0.6548 -0.0007 6 6 4.8004 -1.5340 -0.0012 7 1 4.5163 -2.5521 -0.2673 8 6 5.4329 -1.5286 1.3919 9 7 5.7692 -1.0242 -0.9807 10 6 5.4626 -1.5208 -2.3351 11 6 6.9694 -1.7319 -2.5385 12 7 7.6769 -0.5539 -3.0468 13 6 7.2447 0.7882 -2.6492 14 6 8.7253 -0.7050 -3.8800 15 8 9.0830 -1.8161 -4.2095 16 6 9.4535 0.5067 -4.4024 17 16 10.8014 -0.0212 -5.4888 18 6 11.4611 1.5482 -5.9427 19 1 11.0180 2.4532 -5.5540 20 6 12.5509 1.6216 -6.7991 21 7 13.0913 0.5186 -7.2726 22 14 13.2507 3.2855 -7.2798 23 1 13.7033 4.0030 -6.0610 24 1 14.4023 3.0918 -8.1972 25 1 12.2024 4.0845 -7.9639 26 6 6.9825 -1.8620 -1.0094 27 8 2.3074 -1.0840 -0.0004 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 1.9821 2.1112 0.0004 32 1 5.7170 -0.5104 1.6580 33 1 4.7141 -1.9068 2.1188 34 1 6.3178 -2.1648 1.3918 35 1 4.8899 -2.4482 -2.3382 36 1 5.0381 -0.7604 -2.9907 37 1 7.2241 -2.6507 -3.0668 38 1 7.7735 1.0870 -1.7441 39 1 7.4673 1.4937 -3.4498 40 1 6.1716 0.7825 -2.4579 41 1 8.7599 1.1338 -4.9627 42 1 9.8616 1.0740 -3.5658 43 1 13.8531 0.5699 -7.8708 44 1 7.8467 -1.3910 -0.5412 45 1 6.8155 -2.8803 -0.6579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483851839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:52 Heat of formation + Delta-G solvation = 41.794885 kcal Electronic energy + Delta-G solvation = -26745.173628 eV Core-core repulsion = 22892.829076 eV Total energy + Delta-G solvation = -3852.344552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.63753 -41.06950 -38.70702 -35.38803 -34.86033 -33.57885 -32.39502 -32.06586 -29.33427 -27.74914 -27.18718 -26.02465 -25.95984 -25.41861 -23.68025 -22.15230 -21.03924 -20.68319 -18.57276 -17.78327 -17.50930 -17.10324 -16.80000 -16.51393 -15.70520 -15.38443 -15.30655 -14.77655 -14.74274 -14.50294 -14.08583 -13.82199 -13.57316 -13.46702 -13.31534 -12.92581 -12.79783 -12.67435 -12.60312 -12.47509 -12.35074 -11.98053 -11.86418 -11.79426 -11.57440 -11.21065 -11.04598 -11.00748 -11.00208 -10.73158 -10.68438 -9.78286 -9.43425 -9.19056 -9.02616 -8.97813 -8.44939 -8.19448 -6.46532 -6.18329 -3.88636 1.09775 2.17956 2.43343 2.91536 3.03816 3.26249 3.28022 3.31541 3.57601 3.65252 3.68075 4.23741 4.26111 4.38085 4.43551 4.53330 4.54616 4.68086 4.89637 4.92849 4.95611 4.98340 5.06196 5.10551 5.16631 5.21849 5.32687 5.38823 5.42902 5.47533 5.54234 5.64276 5.69216 5.70309 5.75054 5.83196 5.88209 5.97388 6.04835 6.07548 6.20888 6.54365 6.72797 7.51374 7.60828 7.63266 8.38554 8.58396 9.26895 10.89023 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022159 B = 0.002084 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.308642 B =13434.443765 C =14095.558895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.054 4.054 3 C -0.044 4.044 4 N -0.449 5.449 5 C 0.195 3.805 6 C 0.146 3.854 7 H 0.076 0.924 8 C -0.144 4.144 9 N -0.446 5.446 10 C -0.017 4.017 11 C 0.127 3.873 12 N -0.599 5.599 13 C 0.086 3.914 14 C 0.536 3.464 15 O -0.518 6.518 16 C -0.148 4.148 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.012 4.012 27 O -0.206 6.206 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.182 0.818 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.097 0.903 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.296 -3.052 18.156 31.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.107 4.107 3 C -0.183 4.183 4 N -0.177 5.177 5 C -0.013 4.013 6 C 0.036 3.964 7 H 0.093 0.907 8 C -0.201 4.201 9 N -0.170 5.170 10 C -0.147 4.147 11 C 0.021 3.979 12 N -0.334 5.334 13 C -0.057 4.057 14 C 0.324 3.676 15 O -0.393 6.393 16 C -0.298 4.298 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.141 4.141 27 O -0.093 6.093 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.199 0.801 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.136 0.864 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.115 0.885 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -24.063 -3.719 17.721 30.114 hybrid contribution -0.960 1.321 0.116 1.638 sum -25.023 -2.398 17.837 30.823 Atomic orbital electron populations 1.20261 0.84034 1.04390 1.03702 1.23470 0.94975 0.84695 1.07557 1.23193 0.88027 1.00352 1.06748 1.70464 1.22160 1.08935 1.16096 1.25866 0.83493 0.90410 1.01518 1.20476 0.85869 0.93264 0.96747 0.90665 1.21864 1.00950 1.04344 0.92989 1.69135 1.02992 1.43916 1.00966 1.24414 0.97654 1.00509 0.92121 1.21825 0.91058 0.91178 0.93869 1.47451 1.31777 1.06215 1.47911 1.21778 1.01667 0.82189 1.00084 1.20383 0.78959 0.91025 0.77188 1.90686 1.64795 1.26568 1.57205 1.23547 1.03344 0.98577 1.04376 1.85355 1.30865 1.11742 1.55587 1.22824 1.18806 0.92633 1.33997 0.90973 1.24989 0.95729 0.97706 0.95167 1.70013 1.22451 1.27043 1.30831 0.86229 0.78436 0.82396 0.78473 1.19928 1.20847 1.19951 1.24368 0.94691 0.97196 0.97871 1.84362 1.17907 1.36825 1.70213 0.89890 0.88924 0.90426 0.80086 0.90432 0.91739 0.90650 0.90093 0.88952 0.86428 0.92678 0.91447 0.89955 0.89195 0.89143 0.92175 0.88505 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.43 36.01 0.38 0.09 16 2 C -0.05 -0.46 7.39 -35.69 -0.26 -0.72 16 3 C -0.04 -0.42 11.80 -17.77 -0.21 -0.63 16 4 N -0.45 -5.31 11.28 -11.10 -0.13 -5.44 16 5 C 0.19 2.06 7.04 -12.94 -0.09 1.97 16 6 C 0.15 1.26 2.27 -68.87 -0.16 1.10 16 7 H 0.08 0.54 7.52 -51.93 -0.39 0.14 16 8 C -0.14 -1.05 9.07 37.16 0.34 -0.71 16 9 N -0.45 -4.32 4.70 -238.20 -1.12 -5.44 16 10 C -0.02 -0.17 6.58 -7.61 -0.05 -0.22 16 11 C 0.13 1.51 4.66 -67.74 -0.32 1.19 16 12 N -0.60 -8.73 3.11 -173.64 -0.54 -9.27 16 13 C 0.09 1.07 9.33 59.85 0.56 1.63 16 14 C 0.54 10.30 7.69 -10.99 -0.08 10.21 16 15 O -0.52 -11.73 15.38 5.55 0.09 -11.65 16 16 C -0.15 -3.07 4.71 36.01 0.17 -2.90 16 17 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 18 C -0.53 -15.36 9.50 30.94 0.29 -15.07 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 22 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 C -0.01 -0.11 6.08 -7.63 -0.05 -0.16 16 27 O -0.21 -2.11 10.78 5.38 0.06 -2.05 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.18 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.46 7.03 -51.93 -0.37 0.09 16 35 H 0.08 0.64 7.54 -51.93 -0.39 0.25 16 36 H 0.09 1.00 7.25 -51.93 -0.38 0.62 16 37 H 0.12 1.52 7.29 -51.93 -0.38 1.14 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.84 6.44 -51.93 -0.33 0.51 16 40 H 0.08 0.98 5.68 -51.93 -0.29 0.69 16 41 H 0.09 1.75 7.40 -51.91 -0.38 1.36 16 42 H 0.09 1.77 8.11 -51.92 -0.42 1.35 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.08 0.58 7.66 -51.92 -0.40 0.19 16 LS Contribution 385.06 15.07 5.80 5.80 Total: -1.00 -35.98 385.06 -8.58 -44.56 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -6.66 Total: -1.38 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 0.42 Total: -2.20 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -1.05 Total: -45.74 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.14 Total: -13.70 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.98 -8.58 -44.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483851839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.356 kcal (2) G-P(sol) polarization free energy of solvation -35.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds