Wall clock time and date at job start Tue Mar 31 2020 22:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29026 * 124.91514 * 2 1 4 4 C 1.31784 * 117.12422 * 180.22582 * 3 2 1 5 5 C 1.50696 * 122.74946 * 179.74910 * 4 3 2 6 6 C 1.50702 * 109.47175 * 269.70781 * 5 4 3 7 7 O 1.21275 * 119.99990 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00157 * 180.02562 * 6 5 4 9 9 C 1.46502 * 120.00057 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.46753 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.68495 * 300.09624 * 10 9 8 12 12 C 1.53298 * 109.67799 * 179.54370 * 10 9 8 13 13 O 1.42972 * 109.22214 * 187.97472 * 12 10 9 14 14 C 1.42964 * 114.16439 * 62.57758 * 13 12 10 15 15 C 1.53291 * 109.22506 * 297.42090 * 14 13 12 16 16 N 1.47145 * 108.38694 * 52.30330 * 15 14 13 17 17 C 1.36940 * 120.98377 * 129.48229 * 16 15 14 18 18 H 1.07999 * 120.00175 * 211.12909 * 17 16 15 19 19 C 1.38807 * 119.99882 * 31.13219 * 17 16 15 20 20 N 1.31622 * 119.99902 * 10.86621 * 19 17 16 21 21 Si 1.86795 * 120.00321 * 190.86620 * 19 17 16 22 22 H 1.48503 * 109.47181 * 89.99687 * 21 19 17 23 23 H 1.48492 * 109.47404 * 210.00117 * 21 19 17 24 24 H 1.48503 * 109.47088 * 330.00304 * 21 19 17 25 25 C 1.33634 * 114.49775 * 359.48044 * 4 3 2 26 26 C 1.50698 * 126.03651 * 180.27031 * 25 4 3 27 27 S 1.70975 * 124.91613 * 179.69111 * 2 1 3 28 28 H 1.09000 * 109.47357 * 180.28187 * 1 2 3 29 29 H 1.09001 * 109.47577 * 300.28632 * 1 2 3 30 30 H 1.09003 * 109.47180 * 60.28596 * 1 2 3 31 31 H 1.09002 * 109.47285 * 149.70717 * 5 4 3 32 32 H 1.09002 * 109.47338 * 29.71256 * 5 4 3 33 33 H 0.97004 * 119.99659 * 359.97438 * 8 6 5 34 34 H 1.08996 * 109.46502 * 299.99754 * 9 8 6 35 35 H 1.08994 * 109.46924 * 60.00020 * 9 8 6 36 36 H 1.08995 * 109.51165 * 307.89730 * 12 10 9 37 37 H 1.08992 * 109.51171 * 68.05290 * 12 10 9 38 38 H 1.09005 * 109.50886 * 177.49473 * 14 13 12 39 39 H 1.09005 * 109.55178 * 57.37165 * 14 13 12 40 40 H 1.08996 * 109.68064 * 292.57990 * 15 14 13 41 41 H 1.09006 * 109.67582 * 172.02788 * 15 14 13 42 42 H 0.96998 * 119.99817 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.47117 * 90.00504 * 26 25 4 44 44 H 1.09010 * 109.47062 * 209.99675 * 26 25 4 45 45 H 1.08999 * 109.47325 * 329.99686 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 -0.0046 5 6 4.5307 2.0246 -0.0108 6 6 4.8573 2.3987 -1.4336 7 8 4.3448 1.7951 -2.3522 8 7 5.7190 3.4040 -1.6853 9 6 6.0360 3.7680 -3.0685 10 6 7.0305 4.9306 -3.0746 11 1 6.5945 5.7894 -2.5642 12 6 7.3744 5.3081 -4.5201 13 8 8.4381 6.2635 -4.5167 14 6 9.6598 5.7771 -3.9558 15 6 9.4329 5.4237 -2.4815 16 7 8.2704 4.5260 -2.3931 17 6 8.3400 3.3489 -1.6968 18 1 7.7511 2.4999 -2.0110 19 6 9.1676 3.2469 -0.5871 20 7 9.7182 4.3273 -0.0753 21 14 9.4998 1.5764 0.1800 22 1 10.6949 0.9677 -0.4576 23 1 9.7445 1.7399 1.6355 24 1 8.3241 0.6935 -0.0282 25 6 3.9354 -0.4005 0.0023 26 6 5.3575 -0.8993 0.0050 27 16 2.4857 -1.4020 0.0076 28 1 -0.3634 -1.0276 0.0051 29 1 -0.3634 0.5183 0.8874 30 1 -0.3634 0.5094 -0.8926 31 1 5.4432 1.7250 0.5048 32 1 4.0905 2.8819 0.4985 33 1 6.1286 3.8870 -0.9505 34 1 6.4756 2.9106 -3.5781 35 1 5.1235 4.0682 -3.5834 36 1 7.6871 4.4171 -5.0644 37 1 6.4978 5.7410 -5.0017 38 1 10.4273 6.5475 -4.0316 39 1 9.9817 4.8880 -4.4980 40 1 9.2391 6.3325 -1.9118 41 1 10.3153 4.9219 -2.0844 42 1 10.2962 4.2560 0.7004 43 1 5.7002 -1.0141 1.0334 44 1 5.4058 -1.8622 -0.5036 45 1 5.9949 -0.1826 -0.5127 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484597905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:26 Heat of formation + Delta-G solvation = -15.397125 kcal Electronic energy + Delta-G solvation = -28136.902684 eV Core-core repulsion = 24282.078100 eV Total energy + Delta-G solvation = -3854.824584 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.18654 -39.00836 -38.16638 -35.32928 -33.78053 -33.54718 -31.66413 -30.59337 -30.36988 -29.50961 -27.22546 -25.65515 -24.73791 -23.48511 -22.86886 -21.68962 -20.02135 -19.65693 -18.73418 -17.88323 -17.08662 -16.27789 -15.91107 -15.79156 -15.14268 -14.88759 -14.73679 -14.55437 -14.38342 -13.94123 -13.84684 -13.47941 -13.44223 -13.27500 -13.15888 -12.87741 -12.72406 -12.55028 -12.30028 -12.11873 -12.04240 -11.62219 -11.45898 -11.13269 -10.97183 -10.94555 -10.76432 -10.43185 -10.27703 -10.08088 -9.69309 -9.55356 -9.46438 -9.12618 -8.99534 -8.70727 -8.46111 -8.26461 -6.76708 -5.94423 -3.44372 0.78199 1.37817 1.75427 2.81259 3.19388 3.22482 3.30170 3.32446 3.86029 4.13691 4.29654 4.51992 4.86618 5.03849 5.10622 5.12376 5.20225 5.22749 5.32737 5.42158 5.55397 5.58026 5.59613 5.64980 5.71571 5.73774 5.85191 5.98698 6.00638 6.02807 6.09560 6.14035 6.21670 6.30723 6.32168 6.50901 6.74646 7.04816 7.11670 7.46157 7.66039 7.84721 7.84923 8.21245 8.26200 8.84129 9.01685 9.62062 10.21834 11.12022 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014584 B = 0.003555 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.459962 B = 7874.225201 C = 9265.817288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.041 3.959 3 N -0.458 5.458 4 C 0.091 3.909 5 C -0.070 4.070 6 C 0.515 3.485 7 O -0.555 6.555 8 N -0.695 5.695 9 C 0.138 3.862 10 C 0.125 3.875 11 H 0.042 0.958 12 C 0.056 3.944 13 O -0.392 6.392 14 C 0.035 3.965 15 C 0.144 3.856 16 N -0.591 5.591 17 C -0.255 4.255 18 H 0.074 0.926 19 C 0.009 3.991 20 N -0.899 5.899 21 Si 0.894 3.106 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.275 1.275 25 C -0.204 4.204 26 C -0.079 4.079 27 S 0.100 5.900 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.416 0.584 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.040 0.960 40 H 0.029 0.971 41 H 0.092 0.908 42 H 0.255 0.745 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.131 -6.758 0.860 13.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.238 4.238 3 N -0.173 5.173 4 C -0.040 4.040 5 C -0.113 4.113 6 C 0.300 3.700 7 O -0.435 6.435 8 N -0.347 5.347 9 C 0.014 3.986 10 C 0.018 3.982 11 H 0.059 0.941 12 C -0.023 4.023 13 O -0.311 6.311 14 C -0.043 4.043 15 C 0.019 3.981 16 N -0.317 5.317 17 C -0.384 4.384 18 H 0.092 0.908 19 C -0.191 4.191 20 N -0.543 5.543 21 Si 0.724 3.276 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.200 1.200 25 C -0.324 4.324 26 C -0.139 4.139 27 S 0.355 5.645 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.253 0.747 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.110 0.890 42 H 0.066 0.934 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.887 -7.538 0.306 14.079 hybrid contribution 1.229 -0.162 0.919 1.543 sum -10.657 -7.700 1.225 13.205 Atomic orbital electron populations 1.20369 0.85393 1.03139 1.04275 1.26768 1.01381 0.90790 1.04828 1.65952 1.04464 1.31638 1.15228 1.19351 0.89544 0.92949 1.02204 1.20200 0.97974 0.96587 0.96501 1.20141 0.79094 0.80377 0.90356 1.90649 1.53131 1.53263 1.46419 1.45964 1.43978 1.35029 1.09682 1.21129 0.96666 0.97661 0.83193 1.21431 0.88632 0.94874 0.93256 0.94065 1.22866 0.90175 0.92531 0.96742 1.87806 1.21263 1.39519 1.82508 1.23353 0.85516 0.98090 0.97376 1.21410 0.92538 0.93875 0.90306 1.44095 1.05510 1.22032 1.60079 1.19249 1.25341 0.88780 1.05033 0.90843 1.25152 1.01019 0.96610 0.96295 1.69979 1.34374 1.26310 1.23632 0.86427 0.78729 0.83984 0.78493 1.21359 1.21552 1.20019 1.25575 1.00091 0.95473 1.11309 1.20313 0.88737 1.01991 1.02809 1.83686 0.98006 1.12958 1.69878 0.90536 0.89641 0.89552 0.87192 0.87414 0.74655 0.91630 0.92453 0.93528 0.89922 0.90251 0.94142 0.95253 0.88982 0.93430 0.90526 0.91070 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.47 36.01 0.38 -0.27 16 2 C 0.04 0.55 7.39 -13.45 -0.10 0.45 16 3 N -0.46 -7.51 10.53 -8.06 -0.08 -7.60 16 4 C 0.09 1.50 5.23 -84.23 -0.44 1.06 16 5 C -0.07 -1.13 5.63 -29.04 -0.16 -1.29 16 6 C 0.52 9.71 7.82 -10.98 -0.09 9.62 16 7 O -0.56 -12.13 16.03 5.56 0.09 -12.04 16 8 N -0.69 -12.95 3.77 -60.30 -0.23 -13.18 16 9 C 0.14 2.55 4.45 -4.04 -0.02 2.54 16 10 C 0.13 2.42 3.21 -67.42 -0.22 2.20 16 11 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 12 C 0.06 0.99 6.29 37.31 0.23 1.22 16 13 O -0.39 -7.60 10.74 -35.23 -0.38 -7.98 16 14 C 0.03 0.66 6.98 37.31 0.26 0.92 16 15 C 0.14 3.22 5.38 -3.54 -0.02 3.20 16 16 N -0.59 -13.32 3.03 -164.31 -0.50 -13.82 16 17 C -0.25 -6.08 7.06 -15.06 -0.11 -6.18 16 18 H 0.07 1.78 5.81 -52.49 -0.30 1.48 16 19 C 0.01 0.22 5.06 -17.43 -0.09 0.13 16 20 N -0.90 -23.53 11.14 55.49 0.62 -22.91 16 21 Si 0.89 19.69 29.57 -169.99 -5.03 14.66 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 C -0.20 -3.09 6.59 -35.92 -0.24 -3.32 16 26 C -0.08 -1.09 9.81 36.00 0.35 -0.74 16 27 S 0.10 1.25 23.17 -107.50 -2.49 -1.24 16 28 H 0.08 0.51 8.12 -51.93 -0.42 0.08 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.11 1.66 7.35 -51.93 -0.38 1.28 16 32 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 33 H 0.42 7.96 7.32 -40.82 -0.30 7.66 16 34 H 0.07 1.32 7.57 -51.93 -0.39 0.92 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 2.26 6.33 -51.93 -0.33 1.93 16 42 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 45 H 0.08 1.34 7.43 -51.93 -0.39 0.96 16 LS Contribution 376.61 15.07 5.68 5.68 Total: -1.00 -30.20 376.61 -9.29 -39.49 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.72 Total: 9.39 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -0.25 Total: 9.54 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: -0.19 Total: -57.50 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.29 Total: -20.02 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.66 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.49 Total: -1.24 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.20 -9.29 -39.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484597905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.097 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds