Wall clock time and date at job start Tue Mar 31 2020 22:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29026 * 124.91514 * 2 1 4 4 C 1.31784 * 117.12422 * 180.22582 * 3 2 1 5 5 C 1.50696 * 122.74946 * 179.74910 * 4 3 2 6 6 C 1.50702 * 109.47175 * 269.70781 * 5 4 3 7 7 O 1.21275 * 119.99990 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00157 * 180.02562 * 6 5 4 9 9 C 1.46502 * 120.00057 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.46753 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.68495 * 300.09624 * 10 9 8 12 12 C 1.53298 * 109.67799 * 179.54370 * 10 9 8 13 13 O 1.42972 * 109.22214 * 187.97472 * 12 10 9 14 14 C 1.42964 * 114.16439 * 62.57758 * 13 12 10 15 15 C 1.53291 * 109.22506 * 297.42090 * 14 13 12 16 16 N 1.47145 * 108.38694 * 52.30330 * 15 14 13 17 17 C 1.36940 * 120.98377 * 129.48229 * 16 15 14 18 18 H 1.07999 * 120.00175 * 211.12909 * 17 16 15 19 19 C 1.38807 * 119.99882 * 31.13219 * 17 16 15 20 20 N 1.31622 * 119.99902 * 10.86621 * 19 17 16 21 21 Si 1.86795 * 120.00321 * 190.86620 * 19 17 16 22 22 H 1.48503 * 109.47181 * 89.99687 * 21 19 17 23 23 H 1.48492 * 109.47404 * 210.00117 * 21 19 17 24 24 H 1.48503 * 109.47088 * 330.00304 * 21 19 17 25 25 C 1.33634 * 114.49775 * 359.48044 * 4 3 2 26 26 C 1.50698 * 126.03651 * 180.27031 * 25 4 3 27 27 S 1.70975 * 124.91613 * 179.69111 * 2 1 3 28 28 H 1.09000 * 109.47357 * 180.28187 * 1 2 3 29 29 H 1.09001 * 109.47577 * 300.28632 * 1 2 3 30 30 H 1.09003 * 109.47180 * 60.28596 * 1 2 3 31 31 H 1.09002 * 109.47285 * 149.70717 * 5 4 3 32 32 H 1.09002 * 109.47338 * 29.71256 * 5 4 3 33 33 H 0.97004 * 119.99659 * 359.97438 * 8 6 5 34 34 H 1.08996 * 109.46502 * 299.99754 * 9 8 6 35 35 H 1.08994 * 109.46924 * 60.00020 * 9 8 6 36 36 H 1.08995 * 109.51165 * 307.89730 * 12 10 9 37 37 H 1.08992 * 109.51171 * 68.05290 * 12 10 9 38 38 H 1.09005 * 109.50886 * 177.49473 * 14 13 12 39 39 H 1.09005 * 109.55178 * 57.37165 * 14 13 12 40 40 H 1.08996 * 109.68064 * 292.57990 * 15 14 13 41 41 H 1.09006 * 109.67582 * 172.02788 * 15 14 13 42 42 H 0.96998 * 119.99817 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.47117 * 90.00504 * 26 25 4 44 44 H 1.09010 * 109.47062 * 209.99675 * 26 25 4 45 45 H 1.08999 * 109.47325 * 329.99686 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 -0.0046 5 6 4.5307 2.0246 -0.0108 6 6 4.8573 2.3987 -1.4336 7 8 4.3448 1.7951 -2.3522 8 7 5.7190 3.4040 -1.6853 9 6 6.0360 3.7680 -3.0685 10 6 7.0305 4.9306 -3.0746 11 1 6.5945 5.7894 -2.5642 12 6 7.3744 5.3081 -4.5201 13 8 8.4381 6.2635 -4.5167 14 6 9.6598 5.7771 -3.9558 15 6 9.4329 5.4237 -2.4815 16 7 8.2704 4.5260 -2.3931 17 6 8.3400 3.3489 -1.6968 18 1 7.7511 2.4999 -2.0110 19 6 9.1676 3.2469 -0.5871 20 7 9.7182 4.3273 -0.0753 21 14 9.4998 1.5764 0.1800 22 1 10.6949 0.9677 -0.4576 23 1 9.7445 1.7399 1.6355 24 1 8.3241 0.6935 -0.0282 25 6 3.9354 -0.4005 0.0023 26 6 5.3575 -0.8993 0.0050 27 16 2.4857 -1.4020 0.0076 28 1 -0.3634 -1.0276 0.0051 29 1 -0.3634 0.5183 0.8874 30 1 -0.3634 0.5094 -0.8926 31 1 5.4432 1.7250 0.5048 32 1 4.0905 2.8819 0.4985 33 1 6.1286 3.8870 -0.9505 34 1 6.4756 2.9106 -3.5781 35 1 5.1235 4.0682 -3.5834 36 1 7.6871 4.4171 -5.0644 37 1 6.4978 5.7410 -5.0017 38 1 10.4273 6.5475 -4.0316 39 1 9.9817 4.8880 -4.4980 40 1 9.2391 6.3325 -1.9118 41 1 10.3153 4.9219 -2.0844 42 1 10.2962 4.2560 0.7004 43 1 5.7002 -1.0141 1.0334 44 1 5.4058 -1.8622 -0.5036 45 1 5.9949 -0.1826 -0.5127 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484597905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:26 Heat of formation + Delta-G solvation = -35.168478 kcal Electronic energy + Delta-G solvation = -28137.760035 eV Core-core repulsion = 24282.078100 eV Total energy + Delta-G solvation = -3855.681934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.42275 -40.47104 -39.67863 -36.93949 -35.28159 -34.82739 -33.32200 -32.24350 -31.41197 -30.66597 -28.96756 -27.04511 -25.95191 -25.22533 -23.98255 -23.22939 -21.52966 -21.27316 -19.85753 -19.03817 -18.68750 -17.82256 -17.57178 -17.28630 -16.55054 -16.26967 -16.16336 -15.96351 -15.80020 -15.45810 -15.38122 -14.94409 -14.56172 -14.41795 -14.35278 -14.27196 -14.15607 -13.73333 -13.62431 -13.21470 -13.06457 -13.04853 -12.83410 -12.76179 -12.72327 -12.48165 -12.16225 -12.03426 -11.99297 -11.84160 -11.31166 -11.01006 -10.63545 -10.60384 -10.55263 -10.15242 -9.85700 -9.54372 -8.60901 -7.83997 -5.35954 -0.27321 0.36829 0.69971 1.44136 1.49940 1.55505 1.64391 1.72233 2.43286 2.51483 3.03036 3.13435 3.32321 3.44965 3.76548 3.98878 3.99424 4.03988 4.08258 4.22369 4.34293 4.38105 4.44295 4.47238 4.55716 4.57253 4.61016 4.63442 4.65819 4.67768 4.74690 4.86588 4.92654 5.00193 5.05299 5.11347 5.24183 5.30381 5.56890 5.64170 5.71596 6.29685 6.38742 6.69138 6.78395 7.12536 7.32881 7.78192 8.35114 9.20455 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014584 B = 0.003555 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.459962 B = 7874.225201 C = 9265.817288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.034 3.966 3 N -0.495 5.495 4 C 0.068 3.932 5 C -0.066 4.066 6 C 0.517 3.483 7 O -0.586 6.586 8 N -0.695 5.695 9 C 0.145 3.855 10 C 0.127 3.873 11 H 0.037 0.963 12 C 0.057 3.943 13 O -0.397 6.397 14 C 0.045 3.955 15 C 0.150 3.850 16 N -0.605 5.605 17 C -0.243 4.243 18 H 0.071 0.929 19 C -0.033 4.033 20 N -0.928 5.928 21 Si 0.941 3.059 22 H -0.296 1.296 23 H -0.295 1.295 24 H -0.258 1.258 25 C -0.228 4.228 26 C -0.078 4.078 27 S 0.153 5.847 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.413 0.587 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.043 0.957 40 H 0.006 0.994 41 H 0.066 0.934 42 H 0.249 0.751 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.704 -7.914 0.422 14.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.244 4.244 3 N -0.210 5.210 4 C -0.063 4.063 5 C -0.108 4.108 6 C 0.304 3.696 7 O -0.468 6.468 8 N -0.345 5.345 9 C 0.020 3.980 10 C 0.021 3.979 11 H 0.054 0.946 12 C -0.021 4.021 13 O -0.316 6.316 14 C -0.032 4.032 15 C 0.024 3.976 16 N -0.331 5.331 17 C -0.373 4.373 18 H 0.088 0.912 19 C -0.229 4.229 20 N -0.573 5.573 21 Si 0.770 3.230 22 H -0.224 1.224 23 H -0.221 1.221 24 H -0.182 1.182 25 C -0.349 4.349 26 C -0.137 4.137 27 S 0.408 5.592 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.250 0.750 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.134 0.866 38 H 0.122 0.878 39 H 0.062 0.938 40 H 0.024 0.976 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.111 0.889 44 H 0.104 0.896 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.480 -8.700 -0.148 16.044 hybrid contribution 1.631 0.174 1.018 1.930 sum -11.849 -8.526 0.870 14.624 Atomic orbital electron populations 1.20581 0.82534 1.05186 1.04931 1.27559 1.03192 0.90755 1.02929 1.65978 1.04619 1.33246 1.17167 1.19430 0.89948 0.93413 1.03550 1.20169 0.98601 0.97439 0.94603 1.20560 0.78277 0.79598 0.91215 1.90620 1.54283 1.54225 1.47647 1.45991 1.43876 1.35038 1.09637 1.21065 0.97007 0.96649 0.83245 1.21531 0.87479 0.94834 0.94090 0.94583 1.22983 0.90917 0.92799 0.95433 1.87809 1.21509 1.40119 1.82168 1.23226 0.86220 0.99115 0.94674 1.21228 0.91579 0.92456 0.92301 1.44307 1.06852 1.21745 1.60229 1.19310 1.24303 0.89177 1.04472 0.91175 1.25656 1.01475 0.98788 0.97002 1.70111 1.35393 1.27789 1.24050 0.85659 0.78588 0.81482 0.77238 1.22386 1.22128 1.18230 1.25862 1.01729 0.96027 1.11319 1.20322 0.87858 1.01836 1.03709 1.83411 0.95801 1.11281 1.68704 0.87817 0.88394 0.89301 0.86549 0.86240 0.74978 0.93191 0.90755 0.93278 0.86625 0.87806 0.93848 0.97584 0.91558 0.94144 0.88877 0.89647 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 10.47 71.24 0.75 -0.37 16 2 C 0.03 0.84 7.39 88.52 0.65 1.49 16 3 N -0.49 -15.80 10.53 -179.40 -1.89 -17.69 16 4 C 0.07 2.21 5.23 41.52 0.22 2.43 16 5 C -0.07 -2.12 5.63 29.10 0.16 -1.95 16 6 C 0.52 19.47 7.82 87.66 0.69 20.16 16 7 O -0.59 -25.63 16.03 -3.01 -0.05 -25.68 16 8 N -0.69 -25.85 3.77 -463.08 -1.75 -27.60 16 9 C 0.14 5.27 4.45 86.38 0.38 5.65 16 10 C 0.13 4.81 3.21 44.96 0.14 4.96 16 11 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 12 C 0.06 1.90 6.29 72.08 0.45 2.36 16 13 O -0.40 -14.62 10.74 -148.98 -1.60 -16.22 16 14 C 0.05 1.68 6.98 72.08 0.50 2.18 16 15 C 0.15 6.77 5.38 86.35 0.46 7.23 16 16 N -0.61 -27.33 3.03 -673.74 -2.04 -29.38 16 17 C -0.24 -11.65 7.06 84.03 0.59 -11.06 16 18 H 0.07 3.41 5.81 -2.91 -0.02 3.40 16 19 C -0.03 -1.63 5.06 84.86 0.43 -1.20 16 20 N -0.93 -49.69 11.14 21.65 0.24 -49.45 16 21 Si 0.94 40.75 29.57 68.60 2.03 42.77 16 22 H -0.30 -13.23 7.11 99.48 0.71 -12.53 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 24 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 25 C -0.23 -6.67 6.59 24.64 0.16 -6.51 16 26 C -0.08 -2.07 9.81 71.24 0.70 -1.37 16 27 S 0.15 3.48 23.17 -56.49 -1.31 2.17 16 28 H 0.10 1.01 8.12 -2.39 -0.02 0.99 16 29 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.12 3.51 7.35 -2.39 -0.02 3.49 16 32 H 0.12 3.46 8.14 -2.39 -0.02 3.44 16 33 H 0.41 15.93 7.32 -92.71 -0.68 15.25 16 34 H 0.05 1.99 7.57 -2.39 -0.02 1.97 16 35 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.10 3.31 8.14 -2.38 -0.02 3.29 16 39 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.07 3.33 6.33 -2.38 -0.02 3.32 16 42 H 0.25 13.19 8.31 -92.71 -0.77 12.42 16 43 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 45 H 0.06 1.87 7.43 -2.39 -0.02 1.86 16 Total: -1.00 -65.30 376.61 0.27 -65.03 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: 0.33 Total: 32.04 kcal Atomic # 6 Polarization: 17.70 SS G_CDS: 6.30 Total: 24.00 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -5.44 Total: -124.12 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -1.65 Total: -41.90 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.77 kcal Atomic # 16 Polarization: 3.48 SS G_CDS: -1.31 Total: 2.17 kcal Total: -65.30 0.27 -65.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484597905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.863 kcal (2) G-P(sol) polarization free energy of solvation -65.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds