Wall clock time and date at job start Tue Mar 31 2020 22:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29026 * 124.91765 * 2 1 4 4 C 1.31788 * 117.12731 * 180.22991 * 3 2 1 5 5 C 1.50700 * 122.74923 * 179.75057 * 4 3 2 6 6 C 1.50697 * 109.46617 * 269.70075 * 5 4 3 7 7 O 1.21283 * 120.00521 * 359.73030 * 6 5 4 8 8 N 1.34784 * 119.99774 * 180.02562 * 6 5 4 9 9 C 1.47155 * 120.97959 * 359.44589 * 8 6 5 10 10 C 1.53711 * 108.16066 * 129.43454 * 9 8 6 11 11 O 1.42957 * 109.14846 * 52.53443 * 10 9 8 12 12 C 1.42964 * 114.16916 * 297.28738 * 11 10 9 13 13 H 1.09005 * 109.51603 * 302.66187 * 12 11 10 14 14 C 1.52995 * 109.51559 * 182.50425 * 12 11 10 15 15 N 1.46505 * 109.46947 * 65.25536 * 14 12 11 16 16 C 1.36940 * 119.99913 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99835 * 359.97438 * 16 15 14 18 18 C 1.38806 * 119.99816 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00109 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 120.00135 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.47210 * 89.99898 * 20 18 16 22 22 H 1.48502 * 109.47042 * 210.00066 * 20 18 16 23 23 H 1.48496 * 109.46845 * 329.99877 * 20 18 16 24 24 C 1.47144 * 120.98313 * 179.72821 * 8 6 5 25 25 C 1.33635 * 114.49743 * 359.47509 * 4 3 2 26 26 C 1.50695 * 126.03802 * 180.27622 * 25 4 3 27 27 S 1.70977 * 124.91729 * 179.68717 * 2 1 3 28 28 H 1.09001 * 109.47241 * 180.28745 * 1 2 3 29 29 H 1.08997 * 109.47459 * 300.28263 * 1 2 3 30 30 H 1.09001 * 109.47478 * 60.28550 * 1 2 3 31 31 H 1.09001 * 109.46798 * 149.70966 * 5 4 3 32 32 H 1.08993 * 109.47546 * 29.70518 * 5 4 3 33 33 H 1.09001 * 109.67933 * 249.21236 * 9 8 6 34 34 H 1.09001 * 109.67870 * 9.76449 * 9 8 6 35 35 H 1.09004 * 109.65064 * 292.57197 * 10 9 8 36 36 H 1.08997 * 109.48489 * 172.39865 * 10 9 8 37 37 H 1.08993 * 109.47501 * 185.25600 * 14 12 11 38 38 H 1.09002 * 109.47092 * 305.26217 * 14 12 11 39 39 H 0.96994 * 119.99976 * 359.97438 * 15 14 12 40 40 H 0.97004 * 120.00273 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.68443 * 350.23792 * 24 8 6 42 42 H 1.09000 * 109.68322 * 110.78592 * 24 8 6 43 43 H 1.08994 * 109.47795 * 89.99912 * 26 25 4 44 44 H 1.09010 * 109.47264 * 210.00181 * 26 25 4 45 45 H 1.09005 * 109.47088 * 329.99377 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 -0.0047 5 6 4.5307 2.0246 -0.0108 6 6 4.8572 2.3986 -1.4337 7 8 4.3488 1.7914 -2.3523 8 7 5.7189 3.4040 -1.6854 9 6 6.3439 4.1586 -0.5875 10 6 7.8608 4.1939 -0.8331 11 8 8.1106 4.6746 -2.1561 12 6 7.5846 3.8403 -3.1911 13 1 7.9956 2.8355 -3.0930 14 6 7.9644 4.4181 -4.5559 15 7 9.4189 4.3618 -4.7223 16 6 9.9947 4.8271 -5.8743 17 1 9.3766 5.2352 -6.6603 18 6 11.3727 4.7733 -6.0322 19 7 11.9262 5.2200 -7.1396 20 14 12.4418 4.0668 -4.6729 21 1 12.6099 2.6065 -4.8838 22 1 13.7719 4.7266 -4.6958 23 1 11.7933 4.3057 -3.3585 24 6 6.0577 3.7833 -3.0661 25 6 3.9354 -0.4006 0.0022 26 6 5.3574 -0.8993 0.0050 27 16 2.4856 -1.4020 0.0077 28 1 -0.3634 -1.0276 0.0052 29 1 -0.3634 0.5182 0.8874 30 1 -0.3634 0.5094 -0.8925 31 1 5.4432 1.7250 0.5046 32 1 4.0905 2.8819 0.4984 33 1 5.9485 5.1742 -0.5686 34 1 6.1358 3.6654 0.3620 35 1 8.2728 3.1904 -0.7265 36 1 8.3310 4.8594 -0.1091 37 1 7.4859 3.8356 -5.3430 38 1 7.6316 5.4542 -4.6171 39 1 9.9740 3.9956 -4.0162 40 1 12.8892 5.1821 -7.2501 41 1 5.6602 3.0415 -3.7588 42 1 5.6341 4.7618 -3.2925 43 1 5.7002 -1.0141 1.0333 44 1 5.4057 -1.8623 -0.5037 45 1 5.9949 -0.1826 -0.5127 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484679991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:41 Heat of formation + Delta-G solvation = -16.348807 kcal Electronic energy + Delta-G solvation = -27136.693800 eV Core-core repulsion = 23281.827948 eV Total energy + Delta-G solvation = -3854.865852 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.86274 -39.89292 -38.30585 -35.21751 -34.54346 -34.21165 -32.32375 -30.99065 -30.63948 -30.04695 -28.17223 -26.08383 -25.16277 -23.56790 -23.30251 -22.05895 -21.04417 -19.68312 -18.97446 -18.19533 -17.78520 -17.40693 -16.63065 -16.10814 -15.75327 -15.36985 -15.17626 -14.94509 -14.65196 -14.35467 -14.01267 -13.84615 -13.82827 -13.66734 -13.46686 -13.11775 -13.06716 -12.81274 -12.64697 -12.54198 -12.46581 -12.30379 -12.16147 -11.82581 -11.42020 -11.24320 -11.08272 -10.85501 -10.53941 -10.19027 -10.02369 -9.96238 -9.89586 -9.56456 -9.47041 -8.89026 -8.86437 -8.65205 -7.20704 -5.73676 -3.09023 0.41216 1.02987 1.40959 2.32068 2.42415 2.82612 3.40708 3.45174 3.47793 3.71429 3.78737 4.28574 4.43608 4.55758 4.60648 4.63035 4.66561 4.76415 4.88780 4.90510 4.94758 5.00070 5.09174 5.12086 5.13646 5.17581 5.33656 5.43264 5.48128 5.52357 5.55902 5.57654 5.59646 5.73730 5.77487 5.88279 5.94161 6.21122 6.46063 6.59479 7.13416 7.29628 7.47377 7.95539 8.01467 8.44863 9.23995 9.96259 10.16436 11.44601 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021436 B = 0.002291 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.914529 B =12219.165716 C =12369.304152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.045 3.955 3 N -0.462 5.462 4 C 0.082 3.918 5 C -0.065 4.065 6 C 0.521 3.479 7 O -0.528 6.528 8 N -0.615 5.615 9 C 0.071 3.929 10 C 0.045 3.955 11 O -0.361 6.361 12 C 0.070 3.930 13 H 0.063 0.937 14 C 0.168 3.832 15 N -0.750 5.750 16 C -0.243 4.243 17 H 0.091 0.909 18 C 0.004 3.996 19 N -0.934 5.934 20 Si 0.884 3.116 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.274 1.274 24 C 0.087 3.913 25 C -0.209 4.209 26 C -0.077 4.077 27 S 0.117 5.883 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.105 0.895 37 H 0.045 0.955 38 H 0.038 0.962 39 H 0.364 0.636 40 H 0.259 0.741 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.974 -11.986 22.944 33.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.233 4.233 3 N -0.176 5.176 4 C -0.050 4.050 5 C -0.108 4.108 6 C 0.308 3.692 7 O -0.403 6.403 8 N -0.350 5.350 9 C -0.052 4.052 10 C -0.033 4.033 11 O -0.279 6.279 12 C 0.012 3.988 13 H 0.081 0.919 14 C 0.040 3.960 15 N -0.396 5.396 16 C -0.373 4.373 17 H 0.109 0.891 18 C -0.192 4.192 19 N -0.582 5.582 20 Si 0.714 3.286 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.200 1.200 24 C -0.036 4.036 25 C -0.330 4.330 26 C -0.136 4.136 27 S 0.372 5.628 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.123 0.877 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.197 0.803 40 H 0.069 0.931 41 H 0.121 0.879 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.636 -12.620 22.183 33.459 hybrid contribution 1.335 0.128 0.995 1.670 sum -20.301 -12.492 23.178 33.248 Atomic orbital electron populations 1.20407 0.85140 1.03425 1.04479 1.26824 1.01577 0.90788 1.04115 1.65946 1.04261 1.31804 1.15576 1.19251 0.89744 0.92665 1.03295 1.20195 0.98026 0.97049 0.95481 1.20352 0.78439 0.79350 0.91030 1.90728 1.51224 1.51900 1.46457 1.48151 1.44998 1.34217 1.07679 1.22622 0.94885 0.97675 0.90062 1.23013 0.93355 1.00489 0.86491 1.88151 1.77680 1.48961 1.13083 1.22863 0.91325 0.94791 0.89870 0.91929 1.20601 0.86654 0.98796 0.89980 1.42573 1.01127 1.76496 1.19410 1.19053 0.91181 1.33490 0.93537 0.89145 1.24658 0.96361 1.01110 0.97034 1.69704 1.10391 1.52295 1.25859 0.86538 0.80486 0.78907 0.82686 1.21199 1.21740 1.20001 1.22311 0.96089 1.02402 0.82782 1.25593 1.00419 0.95594 1.11354 1.20263 0.88572 1.02020 1.02740 1.83856 0.97425 1.12497 1.68982 0.90317 0.89463 0.89349 0.87293 0.87064 0.90025 0.89067 0.92848 0.87688 0.93717 0.94384 0.80339 0.93086 0.87920 0.90228 0.90357 0.90745 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.47 36.00 0.38 -0.09 16 2 C 0.05 0.45 7.39 -13.46 -0.10 0.35 16 3 N -0.46 -5.68 10.53 -8.06 -0.08 -5.76 16 4 C 0.08 0.94 5.23 -84.22 -0.44 0.50 16 5 C -0.07 -0.62 4.01 -29.04 -0.12 -0.73 16 6 C 0.52 6.69 7.70 -10.98 -0.08 6.61 16 7 O -0.53 -8.95 15.50 5.56 0.09 -8.87 16 8 N -0.62 -7.33 3.01 -172.02 -0.52 -7.85 16 9 C 0.07 0.62 6.57 -3.31 -0.02 0.60 16 10 C 0.04 0.48 7.00 37.53 0.26 0.74 16 11 O -0.36 -5.74 10.33 -35.23 -0.36 -6.10 16 12 C 0.07 1.12 2.81 -26.58 -0.07 1.05 16 13 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 14 C 0.17 3.30 5.93 -4.04 -0.02 3.28 16 15 N -0.75 -18.43 5.36 -59.91 -0.32 -18.75 16 16 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 17 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 18 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 19 N -0.93 -29.81 13.97 55.49 0.78 -29.03 16 20 Si 0.88 22.53 27.74 -169.99 -4.71 17.81 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 23 H -0.27 -6.64 6.52 56.52 0.37 -6.27 16 24 C 0.09 1.20 5.92 -3.54 -0.02 1.18 16 25 C -0.21 -2.13 6.59 -35.92 -0.24 -2.37 16 26 C -0.08 -0.60 9.81 36.00 0.35 -0.25 16 27 S 0.12 1.04 23.17 -107.50 -2.49 -1.45 16 28 H 0.08 0.32 8.12 -51.93 -0.42 -0.10 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.11 0.71 6.89 -51.93 -0.36 0.36 16 32 H 0.11 0.89 8.00 -51.93 -0.42 0.48 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.50 6.05 -51.93 -0.31 0.19 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.36 8.82 5.53 -40.82 -0.23 8.60 16 40 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 41 H 0.10 1.53 7.08 -51.93 -0.37 1.16 16 42 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 45 H 0.08 0.65 7.43 -51.93 -0.39 0.27 16 LS Contribution 380.78 15.07 5.74 5.74 Total: -1.00 -37.70 380.78 -9.00 -46.70 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.73 Total: 3.87 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -0.38 Total: 3.71 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: -0.15 Total: -61.40 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.28 Total: -14.97 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.71 Total: 17.81 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.49 Total: -1.45 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.70 -9.00 -46.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484679991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.350 kcal (2) G-P(sol) polarization free energy of solvation -37.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds